BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0003.p (228 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C2W9V2.1 C2W9V2_BACCE Putative uncharacterized protein 198 3e-49 A9VLV5.1 A9VLV5_BACWK Putative uncharacterized protein 196 1e-48 C3B5C2.1 C3B5C2_BACMY Putative uncharacterized protein 196 2e-48 C2ZRS9.1 C2ZRS9_BACCE Putative uncharacterized protein 195 3e-48 C2ZAA4.1 C2ZAA4_BACCE Putative uncharacterized protein 195 3e-48 >C2W9V2.1 C2W9V2_BACCE Putative uncharacterized protein Length = 227 Score = 198 bits (503), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 89/156 (57%), Positives = 119/156 (76%) Query: 73 RIPFAALPSVKPVSAIVILSAYVFGAEAGFIIGAVAALVSNIYFGQGPWTPWQMFAWGMV 132 R+PF+ +PSV+P S ++I+SA VFG+E GF++GA AALVSNI+ GQGPWTPWQMFAWGM+ Sbjct: 61 RVPFSLMPSVQPTSFVIIVSAIVFGSETGFMVGATAALVSNIFLGQGPWTPWQMFAWGMI 120 Query: 133 GLTAGWLRNTWWMKKKGGMLAFGFVWGFLFGWIMNIWYLISLPDAFSWGLVAAAYASSFY 192 G TAG LRNTW M+K G + +GF+ GF+FGWIMN+W ++ + +W A Y +SFY Sbjct: 121 GFTAGLLRNTWLMRKMWGRIIYGFIVGFIFGWIMNLWGILGFLEGLTWKDFIAYYMASFY 180 Query: 193 LDLAHALSNVFFLAVLAGGWTKVLKRFRKKYGLLQE 228 D AHALSNV FL + + W ++L RF+KKYG+L + Sbjct: 181 FDFAHALSNVIFLVLFSSSWIQILMRFKKKYGILDD 216 >A9VLV5.1 A9VLV5_BACWK Putative uncharacterized protein Length = 233 Score = 196 bits (499), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 92/156 (58%), Positives = 116/156 (74%) Query: 73 RIPFAALPSVKPVSAIVILSAYVFGAEAGFIIGAVAALVSNIYFGQGPWTPWQMFAWGMV 132 R+PF+ LPSV+P S ++I+SA VFG+E GF+IGA AA+VSNI+ GQGPWTPWQMF+WGM+ Sbjct: 74 RVPFSILPSVQPTSFVIIVSAIVFGSETGFMIGATAAIVSNIFLGQGPWTPWQMFSWGMI 133 Query: 133 GLTAGWLRNTWWMKKKGGMLAFGFVWGFLFGWIMNIWYLISLPDAFSWGLVAAAYASSFY 192 G AG LRNT+ MKK G L +GF GFLFGWIMN W L+ +W V A Y +SFY Sbjct: 134 GFIAGLLRNTFLMKKLWGRLLYGFAVGFLFGWIMNFWGLLGFIQEATWETVIAYYVASFY 193 Query: 193 LDLAHALSNVFFLAVLAGGWTKVLKRFRKKYGLLQE 228 DL+HA+SNV FL + + W +L RF+KKYG+L E Sbjct: 194 FDLSHAISNVIFLLLFSTSWITILTRFKKKYGILDE 229 >C3B5C2.1 C3B5C2_BACMY Putative uncharacterized protein Length = 231 Score = 196 bits (497), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 88/156 (56%), Positives = 120/156 (76%) Query: 73 RIPFAALPSVKPVSAIVILSAYVFGAEAGFIIGAVAALVSNIYFGQGPWTPWQMFAWGMV 132 R+PF+ +PSV+P S ++I+SA VFG+E GF+IGA AALVSNI+ GQGPWTPWQMF+WGM+ Sbjct: 65 RVPFSIMPSVQPTSFVIIVSAIVFGSETGFMIGATAALVSNIFLGQGPWTPWQMFSWGMI 124 Query: 133 GLTAGWLRNTWWMKKKGGMLAFGFVWGFLFGWIMNIWYLISLPDAFSWGLVAAAYASSFY 192 G AG LRNT+ M+K G + +GF+ GF+FGWIMN+W ++ + +W A YA+SFY Sbjct: 125 GFIAGLLRNTFIMRKLWGRVIYGFIAGFVFGWIMNLWGILGFLEGLTWKDFIAYYAASFY 184 Query: 193 LDLAHALSNVFFLAVLAGGWTKVLKRFRKKYGLLQE 228 DLAHALSNV FL + + W +++ RF+KKYG+L + Sbjct: 185 FDLAHALSNVIFLVLFSSSWIRIITRFKKKYGILDD 220 >C2ZRS9.1 C2ZRS9_BACCE Putative uncharacterized protein Length = 207 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 93/156 (59%), Positives = 117/156 (75%) Query: 73 RIPFAALPSVKPVSAIVILSAYVFGAEAGFIIGAVAALVSNIYFGQGPWTPWQMFAWGMV 132 R+PF+ LPSV+P S ++I+SA VFG+E GF+IGA AA+VSNI+ GQGPWTPWQMF+WGM+ Sbjct: 48 RVPFSILPSVQPTSFVIIVSAIVFGSETGFMIGATAAIVSNIFLGQGPWTPWQMFSWGMI 107 Query: 133 GLTAGWLRNTWWMKKKGGMLAFGFVWGFLFGWIMNIWYLISLPDAFSWGLVAAAYASSFY 192 G AG LRNT+ MKK G L +GFV GFLFGWIMN W L+ +W V A YA+SF Sbjct: 108 GFIAGLLRNTFLMKKLWGRLLYGFVVGFLFGWIMNFWGLLGFIQEATWETVIAYYAASFS 167 Query: 193 LDLAHALSNVFFLAVLAGGWTKVLKRFRKKYGLLQE 228 DL+HA+SNV FL + + W +L RF+KKYG+L E Sbjct: 168 FDLSHAISNVIFLLLFSTSWITILTRFKKKYGILDE 203 >C2ZAA4.1 C2ZAA4_BACCE Putative uncharacterized protein Length = 207 Score = 195 bits (495), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 93/156 (59%), Positives = 117/156 (75%) Query: 73 RIPFAALPSVKPVSAIVILSAYVFGAEAGFIIGAVAALVSNIYFGQGPWTPWQMFAWGMV 132 R+PF+ LPSV+P S ++I+SA VFG+E GF+IGA AA+VSNI+ GQGPWTPWQMF+WGM+ Sbjct: 48 RVPFSILPSVQPTSFVIIVSAIVFGSETGFMIGATAAIVSNIFLGQGPWTPWQMFSWGMI 107 Query: 133 GLTAGWLRNTWWMKKKGGMLAFGFVWGFLFGWIMNIWYLISLPDAFSWGLVAAAYASSFY 192 G AG LRNT+ MKK G L +GFV GFLFGWIMN W L+ +W V A YA+SF Sbjct: 108 GFIAGLLRNTFLMKKLWGRLLYGFVVGFLFGWIMNFWGLLGFIQEATWETVIAYYAASFS 167 Query: 193 LDLAHALSNVFFLAVLAGGWTKVLKRFRKKYGLLQE 228 DL+HA+SNV FL + + W +L RF+KKYG+L E Sbjct: 168 FDLSHAISNVIFLLLFSTSWITILTRFKKKYGILDE 203 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.331 0.143 0.490 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,151,155,122 Number of extensions: 44546211 Number of successful extensions: 166269 Number of sequences better than 1.0e-05: 154 Number of HSP's gapped: 166149 Number of HSP's successfully gapped: 154 Length of query: 228 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 97 Effective length of database: 1,826,543,238 Effective search space: 177174694086 Effective search space used: 177174694086 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 129 (54.3 bits)