BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0002.p (526 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0EEK0.1 C0EEK0_9CLOT Putative uncharacterized protein 471 e-131 C2S5Z4.1 C2S5Z4_BACCE ABC transporter ATP-binding protein 454 e-126 Q6HG98.1 Y3105_BACHK Putative ABC transporter ATP-binding protei... 454 e-126 B7HXX3.1 B7HXX3_BACC7 ABC transporter, ATP-binding protein 454 e-125 B5V2M0.1 B5V2M0_BACCE ABC transporter, ATP-binding protein 454 e-125 >C0EEK0.1 C0EEK0_9CLOT Putative uncharacterized protein Length = 572 Score = 471 bits (1213), Expect = e-131, Method: Compositional matrix adjust. Identities = 258/531 (48%), Positives = 344/531 (64%), Gaps = 27/531 (5%) Query: 1 VLLGPSGGGKTTLLRHLKRELAPVGKAGGKIAYKGQPLSGLPAELAAAEIGMVFQNPDAQ 60 V+ G SG GK+TLLRH+KRELAP G G++ Y G + L ++AAEIG V QNP+ Q Sbjct: 27 VVCGRSGCGKSTLLRHMKRELAPDGDREGQVLYNGTDVEELAKRVSAAEIGFVHQNPERQ 86 Query: 61 IVMDTVWHELAFSMENMGYPPAVMRSRLAEIAGLFGLEPLLYKSVHELSGGQKQLLNLAS 120 IV D VWHELAF +E++GY ++R R+AE+A FG++ KSV ELSGGQKQLLNLAS Sbjct: 87 IVTDKVWHELAFGLESLGYSSKIIRRRVAEMASFFGIQTWFRKSVFELSGGQKQLLNLAS 146 Query: 121 VLMLQPKLLLLDEPTSQLDPVAAREFLQTLHRLNEEMSVTVIISEHRLEEVLPLADRVLL 180 V+ +QPK+L+LDEPTSQLDP+A+ EFL+TL ++N E+ T+I+SEHRLEE PLADRVL+ Sbjct: 147 VMAMQPKVLILDEPTSQLDPIASSEFLETLAKINRELGTTIILSEHRLEEAFPLADRVLV 206 Query: 181 LEEGELRFQGTPRDFVR--GAGLALHAPHMAYLPTAARLFLALEPDAVQAPREAIPLTVR 238 +E+GEL TP R GA H P LPTA +++ + P+ + P+TVR Sbjct: 207 MEQGELLTFDTPEQVGRRLGAEGERH-PMFLGLPTAMKVYAGVRPEG------SCPITVR 259 Query: 239 EGKRWLHSLAERGPGMGEAAADTGASRLSAPVTSSDLLLSCREVTFRYSKDGAEVLKKLS 298 EG+ WL + GP + + A + + +L ++V FRY +DG +V++ LS Sbjct: 260 EGRTWLSE--QLGPSPRVTSLPSPAEQREKRENAIEL----KDVWFRYDRDGEDVVRDLS 313 Query: 299 LSLYRGELLAVMGGNGAGKSTLLHILNGLLKPQRGKVTLAKGETS------------GFL 346 L + RG+L ++GGNG GK+T L +++G KP RGKV + E G L Sbjct: 314 LQVARGDLFCLIGGNGVGKTTTLKLISGARKPYRGKVLIGGKEIKKYSNQELFTHNLGML 373 Query: 347 AQNPLLYFSYDTVQEELQQMAEYAGLSKEEADREIARLLAIFQLEDLLLSHPHDISGGQQ 406 QNP F+ V+EEL +M YA L+ +E + +L L DL HP+D+SGG+Q Sbjct: 374 PQNPQALFTEAAVEEELYEMLSYAKLADKERLARVDEMLEFLGLTDLRKMHPYDLSGGEQ 433 Query: 407 QKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLGDLRRQGVSILLVTHDVEFAARY 466 Q+LAL V+LL P ILLLDEPTKGLDP K LA L +L+ QGV+IL+VTHD+EF A Y Sbjct: 434 QRLALGKVLLLEPKILLLDEPTKGLDPFFKTVLAELFAELKSQGVTILMVTHDIEFCAEY 493 Query: 467 ASRCAMLFDGGITSEGTPAEFFSSNYFYTTAVNRMARELLPQALTIEDVMN 517 A CAM FDG + S+ TP FFS N FYTTA NRM+R L A+T +DV++ Sbjct: 494 ADECAMFFDGSVVSQDTPRVFFSGNSFYTTAANRMSRHLFDNAVTYKDVIS 544 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 71/220 (32%), Positives = 106/220 (48%), Gaps = 15/220 (6%) Query: 282 VTFRYSKDGAEVLKKLSLSLYRGELLAVMGGNGAGKSTLLHILNGLLKP---QRGKV--- 335 ++F Y+ L +LS + E + V G +G GKSTLL + L P + G+V Sbjct: 1 MSFAYAGCDQPALCELSFGIKPSEFIVVCGRSGCGKSTLLRHMKRELAPDGDREGQVLYN 60 Query: 336 -----TLAKGETS---GFLAQNPLLYFSYDTVQEELQQMAEYAGLSKEEADREIARLLAI 387 LAK ++ GF+ QNP D V EL E G S + R +A + + Sbjct: 61 GTDVEELAKRVSAAEIGFVHQNPERQIVTDKVWHELAFGLESLGYSSKIIRRRVAEMASF 120 Query: 388 FQLEDLLLSHPHDISGGQQQKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLGDLR 447 F ++ ++SGGQ+Q L LA VM + P +L+LDEPT LDP A L + Sbjct: 121 FGIQTWFRKSVFELSGGQKQLLNLASVMAMQPKVLILDEPTSQLDPIASSEFLETLAKIN 180 Query: 448 RQ-GVSILLVTHDVEFAARYASRCAMLFDGGITSEGTPAE 486 R+ G +I+L H +E A A R ++ G + + TP + Sbjct: 181 RELGTTIILSEHRLEEAFPLADRVLVMEQGELLTFDTPEQ 220 >C2S5Z4.1 C2S5Z4_BACCE ABC transporter ATP-binding protein Length = 553 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 241/533 (45%), Positives = 344/533 (64%), Gaps = 42/533 (7%) Query: 2 LLGPSGGGKTTLLRHLKRELAPVGKAGGKIAYKGQPLSGLPAELAAAEIGMVFQNPDAQI 61 L G SG GKTTLL+H K+EL P+GK G I Y G L +P L+A EIGMVFQNP+ Q+ Sbjct: 39 LAGGSGSGKTTLLKHFKKELLPIGKRTGDIYYDGTLLENVPDLLSAQEIGMVFQNPENQL 98 Query: 62 VMDTVWHELAFSMENMGYPPAVMRSRLAEIAGLFGLEPLLYKSVHELSGGQKQLLNLASV 121 VMDTV ELAFS+EN+G P +++ R+AE+ G + LL++SVH LSGGQKQL+NLA+V Sbjct: 99 VMDTVIQELAFSLENIGLPSHIIQKRIAELISFLGFQDLLHQSVHTLSGGQKQLVNLAAV 158 Query: 122 LMLQPKLLLLDEPTSQLDPVAAREFLQTLHRLNEEMSVTVIISEHRLEEVLPLADRVLLL 181 L++QPKLLLLDEPT+QLDP+AA+EFL L R+NEE+ +T+++SEHRL+EV+PLA RV+ + Sbjct: 159 LVMQPKLLLLDEPTAQLDPIAAKEFLGLLKRINEELGITIVLSEHRLDEVIPLATRVICM 218 Query: 182 EEGELRFQGTPRDFVRGAGLALHAPHMAYLPTAARLFLALEPDAVQAPREAIPLTVREGK 241 G++ + G+P+ V A + ++P RLFL + IP TVRE + Sbjct: 219 SNGQIVYDGSPKTVV--ANMWEVEKFRPFIPQIPRLFLEWNA-------KDIPFTVREAQ 269 Query: 242 RWLHSLAERGPGMGEAAADTGASRLSAPVTSS---DLLLSCREVTFRYSKDGAEVLKKLS 298 ++ + S ++ P+ S +++LS ++F+Y K+ +L+ L+ Sbjct: 270 MKMNDF-------------SAISYVNEPIVQSEKQEVILSAEHISFQYEKNSPLILRDLT 316 Query: 299 LSLYRGELLAVMGGNGAGKSTLLHILNGLLKPQRGKVTL-----------AKGETSGFLA 347 +S+ +G+ +A++G NG GKSTLL IL GL K +RGKV + ++ G+++ Sbjct: 317 VSIEKGKWVALVGKNGTGKSTLLTILAGLQKARRGKVKWNGKVIHKIDSKERFKSIGYVS 376 Query: 348 QNPLLYFSYDTVQEELQQMAE--YAGLSKEEADREIARLLAIFQLEDLLLSHPHDISGGQ 405 Q+P +F++DTV +E+ + A Y KE A+ ++ + F L L HPHD SGG+ Sbjct: 377 QHPYYHFTFDTVWDEVYERARELYGEQGKEIAEHQLKK----FWLYALKERHPHDCSGGE 432 Query: 406 QQKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLGDLRRQGVSILLVTHDVEFAAR 465 QQ LAL +L P +LLLDEPTKGLDP KER+ L L+++G +I++ THD+EFAA+ Sbjct: 433 QQLLALCTTLLSKPTLLLLDEPTKGLDPWKKERVGELFRKLQKEGTTIVMATHDIEFAAK 492 Query: 466 YASRCAMLFDGGITSEGTPAEFFSSNYFYTTAVNRMARELLPQALTIEDVMNA 518 Y +C MLFDG + P EFFS N+FYTT++NR R+ LP ALT EDV A Sbjct: 493 YVDQCMMLFDGAVIMNDAPKEFFSGNFFYTTSINRFIRKELPYALTWEDVYEA 545 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 17/221 (7%) Query: 280 REVTFRYSKDGAEVLKKLSLSLYRGELLAVMGGNGAGKSTLLHILNGLLKPQRGKVT--- 336 ++F Y+ + E L+ +SLS+ +GE +A+ GG+G+GK+TLL L P GK T Sbjct: 10 NNLSFVYADENEEALQHISLSVQKGEFIALAGGSGSGKTTLLKHFKKELLP-IGKRTGDI 68 Query: 337 ------------LAKGETSGFLAQNPLLYFSYDTVQEELQQMAEYAGLSKEEADREIARL 384 L + G + QNP DTV +EL E GL + IA L Sbjct: 69 YYDGTLLENVPDLLSAQEIGMVFQNPENQLVMDTVIQELAFSLENIGLPSHIIQKRIAEL 128 Query: 385 LAIFQLEDLLLSHPHDISGGQQQKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLG 444 ++ +DLL H +SGGQ+Q + LA V+++ P +LLLDEPT LDP A + LL Sbjct: 129 ISFLGFQDLLHQSVHTLSGGQKQLVNLAAVLVMQPKLLLLDEPTAQLDPIAAKEFLGLLK 188 Query: 445 DLRRQ-GVSILLVTHDVEFAARYASRCAMLFDGGITSEGTP 484 + + G++I+L H ++ A+R + +G I +G+P Sbjct: 189 RINEELGITIVLSEHRLDEVIPLATRVICMSNGQIVYDGSP 229 >Q6HG98.1 Y3105_BACHK Putative ABC transporter ATP-binding protein BT9727_3105 EC=3.6.3.- Length = 551 Score = 454 bits (1168), Expect = e-126, Method: Compositional matrix adjust. Identities = 242/534 (45%), Positives = 344/534 (64%), Gaps = 42/534 (7%) Query: 1 VLLGPSGGGKTTLLRHLKRELAPVGKAGGKIAYKGQPLSGLPAELAAAEIGMVFQNPDAQ 60 VL G SG GKTTLL+H K+EL P+GK G Y G L +P L+A EIGMVFQNP+ Q Sbjct: 36 VLAGGSGSGKTTLLKHFKKELLPIGKRTGDTYYDGTLLENVPDLLSAQEIGMVFQNPENQ 95 Query: 61 IVMDTVWHELAFSMENMGYPPAVMRSRLAEIAGLFGLEPLLYKSVHELSGGQKQLLNLAS 120 +VMDTV ELAFS+EN+G P +++ R+AE+ G + LL++SVH LSGGQKQL+NLA+ Sbjct: 96 LVMDTVIQELAFSLENIGLPSHIIQKRIAELISFLGFQDLLHQSVHTLSGGQKQLVNLAA 155 Query: 121 VLMLQPKLLLLDEPTSQLDPVAAREFLQTLHRLNEEMSVTVIISEHRLEEVLPLADRVLL 180 VL++QPKLLLLDEPT+QLDP+AA+EFL L R+NEE+ +T+++SEHRL+EV+PLA RV+ Sbjct: 156 VLVMQPKLLLLDEPTAQLDPIAAKEFLGLLKRINEELGITIVLSEHRLDEVIPLATRVIC 215 Query: 181 LEEGELRFQGTPRDFVRGAGLALHAPHMAYLPTAARLFLALEPDAVQAPREAIPLTVREG 240 + G + + G+P+ V A + ++P RLFL + IP TVRE Sbjct: 216 MSNGRIVYDGSPKTVV--ANMWEVEKFRPFIPQIPRLFLEWNA-------KDIPFTVREA 266 Query: 241 KRWLHSLAERGPGMGEAAADTGASRLSAPVTSS---DLLLSCREVTFRYSKDGAEVLKKL 297 + L++ + S ++ P+ S +++LS ++F+Y K+ +L+ L Sbjct: 267 QMKLNNF-------------SAISYVNKPIAQSEKQEVILSAEHISFQYEKNSPLILRDL 313 Query: 298 SLSLYRGELLAVMGGNGAGKSTLLHILNGLLKPQRGKVTL-----------AKGETSGFL 346 ++S+ +GE +A++G NG GKSTLL +L GL K +RGKV + ++ G++ Sbjct: 314 TVSIEKGEWVALVGKNGTGKSTLLTLLAGLQKARRGKVKWNGKVIHKIDSKERFKSIGYV 373 Query: 347 AQNPLLYFSYDTVQEELQQMAE--YAGLSKEEADREIARLLAIFQLEDLLLSHPHDISGG 404 +Q+P +F++DTV +E+ + A Y KE A+ ++ + F L L HPHD SGG Sbjct: 374 SQHPYYHFTFDTVWDEVYERARELYGEQGKEIAEHQLKK----FWLYGLKERHPHDCSGG 429 Query: 405 QQQKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLGDLRRQGVSILLVTHDVEFAA 464 +QQ LAL +L P +LLLDEPTKGLDP KER+ L L+++G +I++ THD+EFAA Sbjct: 430 EQQLLALCTTLLSKPTLLLLDEPTKGLDPWKKERVGELFRKLQKEGTTIVMATHDIEFAA 489 Query: 465 RYASRCAMLFDGGITSEGTPAEFFSSNYFYTTAVNRMARELLPQALTIEDVMNA 518 +Y +C MLFDG + P EFFS N+FYTT++NR R+ LP ALT EDV A Sbjct: 490 KYVDQCMMLFDGAVIMNDAPKEFFSGNFFYTTSINRFIRKELPYALTWEDVYEA 543 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 73/221 (33%), Positives = 113/221 (51%), Gaps = 17/221 (7%) Query: 280 REVTFRYSKDGAEVLKKLSLSLYRGELLAVMGGNGAGKSTLLHILNGLLKPQRGKVT--- 336 ++F Y+ + L+ +SLS+ +GE + + GG+G+GK+TLL L P GK T Sbjct: 8 NNLSFVYADENEYALQHISLSIQKGEFIVLAGGSGSGKTTLLKHFKKELLP-IGKRTGDT 66 Query: 337 ------------LAKGETSGFLAQNPLLYFSYDTVQEELQQMAEYAGLSKEEADREIARL 384 L + G + QNP DTV +EL E GL + IA L Sbjct: 67 YYDGTLLENVPDLLSAQEIGMVFQNPENQLVMDTVIQELAFSLENIGLPSHIIQKRIAEL 126 Query: 385 LAIFQLEDLLLSHPHDISGGQQQKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLG 444 ++ +DLL H +SGGQ+Q + LA V+++ P +LLLDEPT LDP A + LL Sbjct: 127 ISFLGFQDLLHQSVHTLSGGQKQLVNLAAVLVMQPKLLLLDEPTAQLDPIAAKEFLGLLK 186 Query: 445 DLRRQ-GVSILLVTHDVEFAARYASRCAMLFDGGITSEGTP 484 + + G++I+L H ++ A+R + +G I +G+P Sbjct: 187 RINEELGITIVLSEHRLDEVIPLATRVICMSNGRIVYDGSP 227 >B7HXX3.1 B7HXX3_BACC7 ABC transporter, ATP-binding protein Length = 551 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 241/533 (45%), Positives = 344/533 (64%), Gaps = 42/533 (7%) Query: 2 LLGPSGGGKTTLLRHLKRELAPVGKAGGKIAYKGQPLSGLPAELAAAEIGMVFQNPDAQI 61 L G SG GKTTLL+H K+EL P+GK G I Y G L +P L+A EIGMVFQNP+ Q+ Sbjct: 37 LAGGSGSGKTTLLKHFKKELLPIGKRTGDIYYDGTLLENVPDLLSAQEIGMVFQNPENQL 96 Query: 62 VMDTVWHELAFSMENMGYPPAVMRSRLAEIAGLFGLEPLLYKSVHELSGGQKQLLNLASV 121 VMDTV ELAFS+EN+G P +++ R+AE+ G + LL++SVH LSGGQKQL+NLA+V Sbjct: 97 VMDTVIQELAFSLENIGLPSHIIQKRIAELISFLGFQDLLHQSVHTLSGGQKQLVNLAAV 156 Query: 122 LMLQPKLLLLDEPTSQLDPVAAREFLQTLHRLNEEMSVTVIISEHRLEEVLPLADRVLLL 181 L++QPKLLLLDEPT+QLDP+AA+EFL L R+NEE+ +T+++SEHRL+EV+PLA RV+ + Sbjct: 157 LVMQPKLLLLDEPTAQLDPIAAKEFLGLLKRINEELGITIVLSEHRLDEVIPLATRVICM 216 Query: 182 EEGELRFQGTPRDFVRGAGLALHAPHMAYLPTAARLFLALEPDAVQAPREAIPLTVREGK 241 G++ + G+P+ V A + ++P RLFL + IP TVRE + Sbjct: 217 SNGQIVYDGSPKTVV--ANMWEVEKFRPFIPQIPRLFLEWNA-------KDIPFTVREAQ 267 Query: 242 RWLHSLAERGPGMGEAAADTGASRLSAPVTSS---DLLLSCREVTFRYSKDGAEVLKKLS 298 ++ + S ++ P+ S +++LS ++F+Y K+ +L+ L+ Sbjct: 268 MKMNDF-------------SAISYVNEPIVQSEKQEVILSAEHISFQYEKNSPLILRDLT 314 Query: 299 LSLYRGELLAVMGGNGAGKSTLLHILNGLLKPQRGKVTL-----------AKGETSGFLA 347 +S+ +G+ +A++G NG GKSTLL IL GL K +RGKV + ++ G+++ Sbjct: 315 VSIEKGKWVALVGKNGTGKSTLLTILAGLQKARRGKVKWNGKVIHKIDSKERFKSIGYVS 374 Query: 348 QNPLLYFSYDTVQEELQQMAE--YAGLSKEEADREIARLLAIFQLEDLLLSHPHDISGGQ 405 Q+P +F++DTV +E+ + A Y KE A+ ++ + F L L HPHD SGG+ Sbjct: 375 QHPYYHFTFDTVWDEVYERARELYGEQGKEIAEHQLKK----FWLYALKERHPHDCSGGE 430 Query: 406 QQKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLGDLRRQGVSILLVTHDVEFAAR 465 QQ LAL +L P +LLLDEPTKGLDP KER+ L L+++G +I++ THD+EFAA+ Sbjct: 431 QQLLALCTTLLSKPTLLLLDEPTKGLDPWKKERVGELFRKLQKEGTTIVMATHDIEFAAK 490 Query: 466 YASRCAMLFDGGITSEGTPAEFFSSNYFYTTAVNRMARELLPQALTIEDVMNA 518 Y +C MLFDG + P EFFS N+FYTT++NR R+ LP ALT EDV A Sbjct: 491 YVDQCMMLFDGAVIMNDAPKEFFSGNFFYTTSINRFIRKELPYALTWEDVYEA 543 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 115/221 (52%), Gaps = 17/221 (7%) Query: 280 REVTFRYSKDGAEVLKKLSLSLYRGELLAVMGGNGAGKSTLLHILNGLLKPQRGKVT--- 336 ++F Y+ + E L+ +SLS+ +GE +A+ GG+G+GK+TLL L P GK T Sbjct: 8 NNLSFVYADENEEALQHISLSVQKGEFIALAGGSGSGKTTLLKHFKKELLP-IGKRTGDI 66 Query: 337 ------------LAKGETSGFLAQNPLLYFSYDTVQEELQQMAEYAGLSKEEADREIARL 384 L + G + QNP DTV +EL E GL + IA L Sbjct: 67 YYDGTLLENVPDLLSAQEIGMVFQNPENQLVMDTVIQELAFSLENIGLPSHIIQKRIAEL 126 Query: 385 LAIFQLEDLLLSHPHDISGGQQQKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLG 444 ++ +DLL H +SGGQ+Q + LA V+++ P +LLLDEPT LDP A + LL Sbjct: 127 ISFLGFQDLLHQSVHTLSGGQKQLVNLAAVLVMQPKLLLLDEPTAQLDPIAAKEFLGLLK 186 Query: 445 DLRRQ-GVSILLVTHDVEFAARYASRCAMLFDGGITSEGTP 484 + + G++I+L H ++ A+R + +G I +G+P Sbjct: 187 RINEELGITIVLSEHRLDEVIPLATRVICMSNGQIVYDGSP 227 >B5V2M0.1 B5V2M0_BACCE ABC transporter, ATP-binding protein Length = 551 Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust. Identities = 241/533 (45%), Positives = 345/533 (64%), Gaps = 42/533 (7%) Query: 2 LLGPSGGGKTTLLRHLKRELAPVGKAGGKIAYKGQPLSGLPAELAAAEIGMVFQNPDAQI 61 L G SG GKTTLL+H K+EL P+GK G Y G L +P L+A EIGMVFQNP+ Q+ Sbjct: 37 LAGGSGSGKTTLLKHFKKELLPIGKRTGDTYYDGTLLENVPDLLSAQEIGMVFQNPENQL 96 Query: 62 VMDTVWHELAFSMENMGYPPAVMRSRLAEIAGLFGLEPLLYKSVHELSGGQKQLLNLASV 121 VMDTV ELAFS+EN+G P +++ R+AE+ G + LL++SVH LSGGQKQL+NLA+V Sbjct: 97 VMDTVIQELAFSLENIGLPSHIIQKRIAELISFLGFQDLLHQSVHTLSGGQKQLVNLAAV 156 Query: 122 LMLQPKLLLLDEPTSQLDPVAAREFLQTLHRLNEEMSVTVIISEHRLEEVLPLADRVLLL 181 L++QPKLLLLDEPT+QLDP+AA+EFL L R+NEE+ +T+++SEHRL+EV+PLA RV+ + Sbjct: 157 LVMQPKLLLLDEPTAQLDPIAAKEFLGLLKRINEELGITIVLSEHRLDEVIPLATRVICM 216 Query: 182 EEGELRFQGTPRDFVRGAGLALHAPHMAYLPTAARLFLALEPDAVQAPREAIPLTVREGK 241 G++ + G+P+ V A + ++P RLFL + + IP TVRE + Sbjct: 217 SNGQIVYDGSPKTVV--ANMWEVEKFRPFIPQIPRLFL-------EWNTKDIPFTVREAQ 267 Query: 242 RWLHSLAERGPGMGEAAADTGASRLSAPVTSS---DLLLSCREVTFRYSKDGAEVLKKLS 298 +++ + S +S P+ S +++LS ++F+Y K+ +L+ L+ Sbjct: 268 MKMNNF-------------SAMSYVSEPIAQSEKQEVILSAEHISFQYEKNSPLILRDLT 314 Query: 299 LSLYRGELLAVMGGNGAGKSTLLHILNGLLKPQRGKVTL-----------AKGETSGFLA 347 +S+ +G+ +A++G NG GKSTLL IL GL K +RGKV + ++ G+++ Sbjct: 315 VSIEKGKWVALVGKNGTGKSTLLTILAGLQKSRRGKVKWNGKVIHKIDSKERFKSIGYVS 374 Query: 348 QNPLLYFSYDTVQEELQQMAE--YAGLSKEEADREIARLLAIFQLEDLLLSHPHDISGGQ 405 Q+P +F++DTV +E+ + A Y KE A+ ++ + F L L HPHD SGG+ Sbjct: 375 QHPYYHFTFDTVWDEVYERARELYGEQGKEIAEHQLKK----FWLYALKERHPHDCSGGE 430 Query: 406 QQKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLGDLRRQGVSILLVTHDVEFAAR 465 QQ LAL +L P +LLLDEPTKGLDP KER+ L L+++G +I++ THD+EFAA+ Sbjct: 431 QQLLALCTTLLSKPTLLLLDEPTKGLDPWKKERVGELFRKLQKEGTTIVMATHDIEFAAK 490 Query: 466 YASRCAMLFDGGITSEGTPAEFFSSNYFYTTAVNRMARELLPQALTIEDVMNA 518 Y +C MLFDG + P EFFS N+FYTT++NR R+ LP ALT EDV A Sbjct: 491 YVDQCMMLFDGAVIMNDAPKEFFSGNFFYTTSINRFIRKQLPYALTWEDVYEA 543 Score = 110 bits (276), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/221 (33%), Positives = 115/221 (52%), Gaps = 17/221 (7%) Query: 280 REVTFRYSKDGAEVLKKLSLSLYRGELLAVMGGNGAGKSTLLHILNGLLKPQRGKVT--- 336 ++F Y+ + + L+ +SLS+ +GE +A+ GG+G+GK+TLL L P GK T Sbjct: 8 NNLSFVYADENEKALQHISLSVQKGEFIALAGGSGSGKTTLLKHFKKELLP-IGKRTGDT 66 Query: 337 ------------LAKGETSGFLAQNPLLYFSYDTVQEELQQMAEYAGLSKEEADREIARL 384 L + G + QNP DTV +EL E GL + IA L Sbjct: 67 YYDGTLLENVPDLLSAQEIGMVFQNPENQLVMDTVIQELAFSLENIGLPSHIIQKRIAEL 126 Query: 385 LAIFQLEDLLLSHPHDISGGQQQKLALAMVMLLGPGILLLDEPTKGLDPGAKERLAALLG 444 ++ +DLL H +SGGQ+Q + LA V+++ P +LLLDEPT LDP A + LL Sbjct: 127 ISFLGFQDLLHQSVHTLSGGQKQLVNLAAVLVMQPKLLLLDEPTAQLDPIAAKEFLGLLK 186 Query: 445 DLRRQ-GVSILLVTHDVEFAARYASRCAMLFDGGITSEGTP 484 + + G++I+L H ++ A+R + +G I +G+P Sbjct: 187 RINEELGITIVLSEHRLDEVIPLATRVICMSNGQIVYDGSP 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,146,275,789 Number of extensions: 134932866 Number of successful extensions: 1030030 Number of sequences better than 1.0e-05: 99474 Number of HSP's gapped: 810233 Number of HSP's successfully gapped: 188637 Length of query: 526 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 385 Effective length of database: 1,732,333,088 Effective search space: 666948238880 Effective search space used: 666948238880 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)