BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0556.0001.p (314 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3BMA7.1 C3BMA7_9BACI Cobalt transport protein 172 5e-41 C3B5C4.1 C3B5C4_BACMY Cobalt transport protein 171 6e-41 C3AMY8.1 C3AMY8_BACMY Cobalt transport protein 171 6e-41 C2W9V5.1 C2W9V5_BACCE Cobalt transport protein 167 9e-40 A7GQH0.1 A7GQH0_BACCN Cobalt transport protein 163 2e-38 >C3BMA7.1 C3BMA7_9BACI Cobalt transport protein Length = 259 Score = 172 bits (435), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 127/224 (56%), Gaps = 1/224 (0%) Query: 65 VSVAVLNPLFSHRGAHILFYFMDQPVTLEAVLYGLMMMAVLLTVCILFISYSYTVTTDKF 124 V V VLNPL +HRGA LF D +TLEA +YGL+M +LLT+ F SY+ +++ KF Sbjct: 32 VMVIVLNPLLTHRGATTLFRLGDNRITLEACMYGLIMGLLLLTIMFTFTSYNDMISSHKF 91 Query: 125 MYXXXXXXXXXXXXXXXXXXXVPLFQRRLRQITMIQRIRGVDAGKGSVRSRMRDGMTLVK 184 +Y VPLF RRLRQIT++Q+ +GV GS R+++GM L++ Sbjct: 92 LYLFSRISPKVALLTMITVRFVPLFIRRLRQITLVQKTKGVQLDSGSFIGRIKNGMKLLQ 151 Query: 185 VLLTWSLEEALQTADSMKARGYGIRKRSVYGIYRXXXXXXXXXXXXXXXXXXXXFFWMKG 244 VLL SLE+ALQTADSM+ARG+G+ KRS Y YR F G Sbjct: 152 VLLVCSLEDALQTADSMQARGFGVTKRSTYIRYRMERKDWYILACLVILLLSCFVFNYCG 211 Query: 245 YGVLEIYPRMKPMHFGWADAAMYASFCLFVLTPPALEGKEKWLW 288 G L IYPR++ + F D ++ F LF+ P +EG+E WLW Sbjct: 212 AGKLLIYPRVESLVFQQYDGLLFVLFILFISLPIIMEGRE-WLW 254 >C3B5C4.1 C3B5C4_BACMY Cobalt transport protein Length = 259 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 65 VSVAVLNPLFSHRGAHILFYFMDQPVTLEAVLYGLMMMAVLLTVCILFISYSYTVTTDKF 124 V V VLNPL +HRGA LF D +TLEA +YGL+M +LL + F SY+ +++ KF Sbjct: 32 VMVIVLNPLLTHRGATTLFRLGDNRITLEACMYGLIMGLLLLAIMFTFTSYNDMISSHKF 91 Query: 125 MYXXXXXXXXXXXXXXXXXXXVPLFQRRLRQITMIQRIRGVDAGKGSVRSRMRDGMTLVK 184 +Y VPLF RRLRQIT++Q+ +GV GS R+++GM L++ Sbjct: 92 LYLFSRISPKVALLTMITVRFVPLFIRRLRQITLVQKTKGVQLDSGSFIGRIKNGMKLLQ 151 Query: 185 VLLTWSLEEALQTADSMKARGYGIRKRSVYGIYRXXXXXXXXXXXXXXXXXXXXFFWMKG 244 VLL SLE+ALQTADSM+ARG+G+ KRS Y YR F G Sbjct: 152 VLLVCSLEDALQTADSMQARGFGVTKRSTYIRYRMERQDWYILACLVILLLSCFVFNYCG 211 Query: 245 YGVLEIYPRMKPMHFGWADAAMYASFCLFVLTPPALEGKEKWLW 288 G L IYPRM+ + F D ++ F LF+ P +EG+E WLW Sbjct: 212 AGKLLIYPRMESLVFQQYDGLLFVLFILFISLPIIMEGRE-WLW 254 >C3AMY8.1 C3AMY8_BACMY Cobalt transport protein Length = 259 Score = 171 bits (434), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 95/224 (42%), Positives = 126/224 (56%), Gaps = 1/224 (0%) Query: 65 VSVAVLNPLFSHRGAHILFYFMDQPVTLEAVLYGLMMMAVLLTVCILFISYSYTVTTDKF 124 V V VLNPL +HRGA LF D +TLEA +YGL+M +LL + F SY+ +++ KF Sbjct: 32 VMVIVLNPLLTHRGATTLFRLGDNRITLEACMYGLIMGLLLLAIMFTFTSYNDMISSHKF 91 Query: 125 MYXXXXXXXXXXXXXXXXXXXVPLFQRRLRQITMIQRIRGVDAGKGSVRSRMRDGMTLVK 184 +Y VPLF RRLRQIT++Q+ +GV GS R+++GM L++ Sbjct: 92 LYLFSRISPKVALLTMITVRFVPLFIRRLRQITLVQKTKGVQLDSGSFIGRIKNGMKLLQ 151 Query: 185 VLLTWSLEEALQTADSMKARGYGIRKRSVYGIYRXXXXXXXXXXXXXXXXXXXXFFWMKG 244 VLL SLE+ALQTADSM+ARG+G+ KRS Y YR F G Sbjct: 152 VLLVCSLEDALQTADSMQARGFGVTKRSTYIRYRMERQDWYILACLVILLLSCFVFNYCG 211 Query: 245 YGVLEIYPRMKPMHFGWADAAMYASFCLFVLTPPALEGKEKWLW 288 G L IYPRM+ + F D ++ F LF+ P +EG+E WLW Sbjct: 212 AGKLLIYPRMESLVFQQYDGLLFVLFILFISLPIIMEGRE-WLW 254 >C2W9V5.1 C2W9V5_BACCE Cobalt transport protein Length = 292 Score = 167 bits (424), Expect = 9e-40, Method: Compositional matrix adjust. Identities = 91/231 (39%), Positives = 128/231 (55%), Gaps = 1/231 (0%) Query: 58 PFFLLMAVSVAVLNPLFSHRGAHILFYFMDQPVTLEAVLYGLMMMAVLLTVCILFISYSY 117 P L+ V V +LNPL +HRGA LF D +TLEA +YGL+M LL + ++F SY+ Sbjct: 58 PSTLVFFVMVVILNPLLTHRGATTLFRLGDNRITLEACMYGLIMGLSLLAIMLIFTSYND 117 Query: 118 TVTTDKFMYXXXXXXXXXXXXXXXXXXXVPLFQRRLRQITMIQRIRGVDAGKGSVRSRMR 177 +++ KF+Y VPLF RRLRQIT++Q+ +GV GS R + Sbjct: 118 IISSQKFLYLFSRISPKVALLTMITVRFVPLFMRRLRQITLVQKTKGVQLDSGSFLERAK 177 Query: 178 DGMTLVKVLLTWSLEEALQTADSMKARGYGIRKRSVYGIYRXXXXXXXXXXXXXXXXXXX 237 +GM L++VLL SLE+ALQTADSM+ARG+G+ KRS Y Y+ Sbjct: 178 NGMKLLQVLLVCSLEDALQTADSMQARGFGVTKRSTYIRYQMSKQDWYIFVCLFVLFISS 237 Query: 238 XFFWMKGYGVLEIYPRMKPMHFGWADAAMYASFCLFVLTPPALEGKEKWLW 288 G+G L IYPR++ + F D ++ F F+ P +EG+E W+W Sbjct: 238 FILNYYGFGKLVIYPRIESLAFHLYDGVLFVLFMSFISLPILMEGRE-WIW 287 >A7GQH0.1 A7GQH0_BACCN Cobalt transport protein Length = 268 Score = 163 bits (412), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/218 (40%), Positives = 120/218 (55%), Gaps = 1/218 (0%) Query: 71 NPLFSHRGAHILFYFMDQPVTLEAVLYGLMMMAVLLTVCILFISYSYTVTTDKFMYXXXX 130 N LF+HRGA LF D +T EA +YG++M L + F SY+ T+++ KF+Y Sbjct: 47 NALFTHRGATTLFRLGDNRITFEACMYGIVMGLSLSAIMFTFTSYNDTISSHKFLYLFSR 106 Query: 131 XXXXXXXXXXXXXXXVPLFQRRLRQITMIQRIRGVDAGKGSVRSRMRDGMTLVKVLLTWS 190 VPLF RRLRQIT++Q+ +GV GS+ R+++GM L++VLL S Sbjct: 107 ISPKVALLTMITVRFVPLFIRRLRQITLVQKTKGVQLDSGSLTERLKNGMKLLQVLLVCS 166 Query: 191 LEEALQTADSMKARGYGIRKRSVYGIYRXXXXXXXXXXXXXXXXXXXXFFWMKGYGVLEI 250 LEEALQTADSM+ARG+GI KRS Y YR F G G L I Sbjct: 167 LEEALQTADSMQARGFGITKRSTYIRYRMAKQDWFVVIYFIIVLLVCCLFSFYGAGKLLI 226 Query: 251 YPRMKPMHFGWADAAMYASFCLFVLTPPALEGKEKWLW 288 YPR++ + F D + F LF+ P +EG+E W+W Sbjct: 227 YPRVETILFQQYDGIQFVLFILFISLPIMMEGRE-WIW 263 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.330 0.140 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,250,462,374 Number of extensions: 38663720 Number of successful extensions: 106876 Number of sequences better than 1.0e-05: 108 Number of HSP's gapped: 106761 Number of HSP's successfully gapped: 108 Length of query: 314 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 179 Effective length of database: 1,788,859,178 Effective search space: 320205792862 Effective search space used: 320205792862 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 131 (55.1 bits)