BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0555.0010.p (922 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K785.1 B3K785_9BACI ATP-dependent DNA helicase PcrA 1148 0.0 B1DE66.1 B1DE66_9BACL ATP-dependent DNA helicase PcrA 1008 0.0 C0Z4D5.1 C0Z4D5_BREBN ATP-dependent DNA helicase EC=3.6.1.- 857 0.0 Q65MR3.1 Q65MR3_BACLD PcrA 847 0.0 C5D4J1.1 C5D4J1_9BACI ATP-dependent DNA helicase PcrA 845 0.0 >B3K785.1 B3K785_9BACI ATP-dependent DNA helicase PcrA Length = 776 Score = 1148 bits (2969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 563/642 (87%), Positives = 597/642 (92%), Gaps = 1/642 (0%) Query: 1 MQLVNIQDAVSRLNPPQRQAVETTEGPLLIMAGAGSGKTRVLTHRIAWLIANRKAPPWAI 60 M ++I DAV RLNP QRQAVE T+GPLLIMAGAGSGKTRVLTHRIA+LIA RKA PW+I Sbjct: 1 MHSIDIHDAVRRLNPQQRQAVEATDGPLLIMAGAGSGKTRVLTHRIAYLIATRKAAPWSI 60 Query: 61 LAITFTNKAAREMQDRVSKLVGPEGRDIWVSTFHSMSVRILRKDIERIGFTSNFSILDST 120 LAITFTNKAAREMQ+RVSKLVG EG+DIWVSTFHSM VRILR+DIERIGFTSNFSILDST Sbjct: 61 LAITFTNKAAREMQERVSKLVGREGQDIWVSTFHSMCVRILRRDIERIGFTSNFSILDST 120 Query: 121 DQLSVIRNCMKDLNIDTKKFEPKAVQAMISAAKNELITPAQYEQKIGDYLEGLVAKVYTM 180 DQLSVIRN MK NID KKFEPKAVQA +SAAKNELI+P QYEQK GDY E LVAKVYT Sbjct: 121 DQLSVIRNVMKQHNIDPKKFEPKAVQAAMSAAKNELISPQQYEQKAGDYFETLVAKVYTE 180 Query: 181 YQKRLKSNNSLDFDDLIMKTIELFKEVPEVLDFYQKKFKYIHVDEYQDTNRAQYMLCRML 240 YQKRLKSNNSLDFDDLIM TI+LFKEVPEVLDFYQ+KF+YIHVDEYQDTNRAQYMLCRML Sbjct: 181 YQKRLKSNNSLDFDDLIMTTIQLFKEVPEVLDFYQRKFQYIHVDEYQDTNRAQYMLCRML 240 Query: 241 ADSHHRICVVGDSDQSIYRWRGADITNILNFEEDYPEAKTILLEQNYRSTSNILNAANGV 300 ADSHHRICVVGDSDQSIYRWRGADITNILNFE+DYPEA+TILLEQNYRST+NILNAAN V Sbjct: 241 ADSHHRICVVGDSDQSIYRWRGADITNILNFEQDYPEARTILLEQNYRSTANILNAANNV 300 Query: 301 IALNTGRKPKKLWTDSAEGAKIKVFRGDSEHDEGYFVTGEISKNVQQGQSYQNHAILYRT 360 I LNTGRKPK LWT+ EG KIKVFRGD+EHDEGYFVT EISKN++ G+SYQ+HAILYRT Sbjct: 301 IGLNTGRKPKNLWTEQGEGPKIKVFRGDTEHDEGYFVTSEISKNIKDGKSYQDHAILYRT 360 Query: 361 NAQSRVIEEILIKSDIPYQIVGGIKFYDRKEIKDLLAYLRLLSNPDDDISLTRIINVPKR 420 NAQSRVIEEILIKSDIPYQIVGGIKFYDRKEIKD+LAYLRL+SNPDDDISLTRIINVPKR Sbjct: 361 NAQSRVIEEILIKSDIPYQIVGGIKFYDRKEIKDMLAYLRLISNPDDDISLTRIINVPKR 420 Query: 421 GLGDTTVGKLAAAAASQGVSIFRALQTVDDLGFAGRTRNTLVEFYDMIEALHRMVEFLSV 480 +GDTTV KLAAAA +G+SIFR L+ VDDLGFAGRTRN LV FYDMI AL RMVEFLSV Sbjct: 421 SIGDTTVAKLAAAAGERGISIFRVLEIVDDLGFAGRTRNALVGFYDMIAALSRMVEFLSV 480 Query: 481 TELTEKILELSQYRLELQNENTLESRSRLENIDEFLSVTMEFEKNNEDKSLVSFLTDLAL 540 TELTEKILE+S+YRLELQNENT+ESRSRLENIDEFLSVT EFEKNNEDKSLVSFLTDLAL Sbjct: 481 TELTEKILEMSEYRLELQNENTIESRSRLENIDEFLSVTQEFEKNNEDKSLVSFLTDLAL 540 Query: 541 IADIDSVNDDEE-RSDAVVLMTMHSAKGLEFPTVFIIGMEEGVFPHSRAFQDNDELEEER 599 IADIDS+NDDEE R DAVVLMTMHSAKGLEFP VFIIGMEEGVFPHSRAF DN+ELEEER Sbjct: 541 IADIDSMNDDEEDRDDAVVLMTMHSAKGLEFPVVFIIGMEEGVFPHSRAFMDNEELEEER 600 Query: 600 RLAYVGITRAEKQLFLSCARMRTLFGRTTANPPSRFLDEIPE 641 RLAYVGITRAEKQLFLSCARMRTLFGRTTAN PSRFL+EIPE Sbjct: 601 RLAYVGITRAEKQLFLSCARMRTLFGRTTANMPSRFLEEIPE 642 >B1DE66.1 B1DE66_9BACL ATP-dependent DNA helicase PcrA Length = 785 Score = 1008 bits (2605), Expect = 0.0, Method: Compositional matrix adjust. Identities = 493/642 (76%), Positives = 552/642 (85%), Gaps = 4/642 (0%) Query: 4 VNIQDAVSRLNPPQRQAVETTEGPLLIMAGAGSGKTRVLTHRIAWLIANRKAPPWAILAI 63 +NI AV +LNPPQR AV+ T+GPLLIMAGAGSGKTRVLTHRIA+LI ++ PW+ILAI Sbjct: 5 INIDQAVQKLNPPQRDAVQATDGPLLIMAGAGSGKTRVLTHRIAYLIEKKRVAPWSILAI 64 Query: 64 TFTNKAAREMQDRVSKLVGPEGRDIWVSTFHSMSVRILRKDIERIGFTSNFSILDSTDQL 123 TFTNKAAREMQ RV+ L+GP G+DIWVSTFHSM VRILR+DI+RIGFTSNFSILDS DQL Sbjct: 65 TFTNKAAREMQARVAALIGPTGQDIWVSTFHSMCVRILRRDIDRIGFTSNFSILDSADQL 124 Query: 124 SVIRNCMKDLNIDTKKFEPKAVQAMISAAKNELITPAQYEQKIGDYLEGLVAKVYTMYQK 183 SVIRNCMK+LNID KKFEPKAVQA IS AKNELITP +YEQK GDY +VAKV+ MYQK Sbjct: 125 SVIRNCMKELNIDVKKFEPKAVQAEISGAKNELITPERYEQKTGDYFTDIVAKVFKMYQK 184 Query: 184 RLKSNNSLDFDDLIMKTIELFKEVPEVLDFYQKKFKYIHVDEYQDTNRAQYMLCRMLADS 243 RLKSNNSLDFDDLIM TI+LFKE+PEVL+FYQ KF+YIHVDEYQDTNRAQYMLCRMLAD Sbjct: 185 RLKSNNSLDFDDLIMTTIQLFKEMPEVLEFYQNKFRYIHVDEYQDTNRAQYMLCRMLADK 244 Query: 244 HHRICVVGDSDQSIYRWRGADITNILNFEEDYPEAKTILLEQNYRSTSNILNAANGVIAL 303 HH ICVVGDSDQSIYRWRGADITNILNFE+DYPEA+TI+LEQNYRS++NIL AAN VI L Sbjct: 245 HHNICVVGDSDQSIYRWRGADITNILNFEDDYPEARTIMLEQNYRSSANILEAANAVIKL 304 Query: 304 NTGRKPKKLWTDSAEGAKIKVFRGDSEHDEGYFVTGEISKNVQQGQSYQNHAILYRTNAQ 363 NTGRKPKKLWTD EG I +++ DSEHDEGYFVTG ISKNV+ G+ Y +HAILYRTNAQ Sbjct: 305 NTGRKPKKLWTDQGEGDMITLYQADSEHDEGYFVTGTISKNVKSGRRYDDHAILYRTNAQ 364 Query: 364 SRVIEEILIKSDIPYQIVGGIKFYDRKEIKDLLAYLRLLSNPDDDISLTRIINVPKRGLG 423 SRVIEEILIKSDIPYQIVGGIKFYDRKEIKDLLAYLRL+SNPDDDISL RIINVPKRG+G Sbjct: 365 SRVIEEILIKSDIPYQIVGGIKFYDRKEIKDLLAYLRLISNPDDDISLQRIINVPKRGIG 424 Query: 424 DTTVGKLAAAAASQGVSIFRALQTVDDLGFAGRTRNTLVEFYDMIEALHRMVEFLSVTEL 483 DTTV KLA A QG SIF L + + R + L EF DMI+ L +MV++LSVTEL Sbjct: 425 DTTVAKLAEEAVRQGTSIFSVLGNLQGIDLNARAQGLLHEFRDMIDNLTQMVDYLSVTEL 484 Query: 484 TEKILELSQYRLELQNENTLESRSRLENIDEFLSVTMEFEKNNEDKSLVSFLTDLALIA- 542 TEK+LE+SQYR+ELQ E TLES +RLENIDEFLSVTM+FEK NEDK+LV+FLTDLALIA Sbjct: 485 TEKVLEMSQYRIELQREKTLESTARLENIDEFLSVTMDFEKRNEDKTLVAFLTDLALIAD 544 Query: 543 ---DIDSVNDDEERSDAVVLMTMHSAKGLEFPTVFIIGMEEGVFPHSRAFQDNDELEEER 599 + +++VVLMTMHSAKGLEFP VFIIGMEE +FPHSRA DN+ELEEER Sbjct: 545 IDSMDKDDDGKPADNNSVVLMTMHSAKGLEFPVVFIIGMEESIFPHSRALNDNEELEEER 604 Query: 600 RLAYVGITRAEKQLFLSCARMRTLFGRTTANPPSRFLDEIPE 641 RLAYVGITRAEKQL+L+CAR RTLFGR +AN PSRFL E+P+ Sbjct: 605 RLAYVGITRAEKQLYLTCARSRTLFGRISANLPSRFLQEVPD 646 >C0Z4D5.1 C0Z4D5_BREBN ATP-dependent DNA helicase EC=3.6.1.- Length = 782 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/634 (65%), Positives = 509/634 (80%), Gaps = 6/634 (0%) Query: 13 LNPPQRQAVETTEGPLLIMAGAGSGKTRVLTHRIAWLIANRKAPPWAILAITFTNKAARE 72 LNP QR+AV TTEGP+LI+AGAGSGKT+VLT RIA+LI+ ++ PW+ILAITFTNKAARE Sbjct: 11 LNPEQREAVLTTEGPVLILAGAGSGKTKVLTQRIAYLISAKQVAPWSILAITFTNKAARE 70 Query: 73 MQDRVSKLVGPEG-RDIWVSTFHSMSVRILRKDIERIGFTSNFSILDSTDQLSVIRNCMK 131 MQ+RV+ ++G +D W+STFHS+ VRILR+DI+R+G +FSILD+ DQLSV++ C+K Sbjct: 71 MQNRVAAIIGGAAAQDAWLSTFHSLCVRILRRDIDRLGINRSFSILDAGDQLSVVKQCLK 130 Query: 132 DLNIDTKKFEPKAVQAMISAAKNELITPAQYEQKIGDYLEGLVAKVYTMYQKRLKSNNSL 191 +LNID K++EP+++ A IS AKNEL P Y + GD + AKVYT YQK+L++N SL Sbjct: 131 ELNIDPKQYEPRSILAAISGAKNELTDPETYTRLAGDPFAQVAAKVYTAYQKKLRNNQSL 190 Query: 192 DFDDLIMKTIELFKEVPEVLDFYQKKFKYIHVDEYQDTNRAQYMLCRMLADSHHRICVVG 251 DFDDLIM T+ LFKEVPEVL+FYQKKF+YIHVDEYQDTNRAQY+L MLAD H +C VG Sbjct: 191 DFDDLIMTTVRLFKEVPEVLEFYQKKFRYIHVDEYQDTNRAQYLLISMLADKHRNVCCVG 250 Query: 252 DSDQSIYRWRGADITNILNFEEDYPEAKTILLEQNYRSTSNILNAANGVIALNTGRKPKK 311 D+DQSIY+WRGADI+ ILNFE+DYPEAK I LEQNYRST IL AAN VIA N RK KK Sbjct: 251 DADQSIYKWRGADISIILNFEKDYPEAKLIKLEQNYRSTKTILQAANQVIANNKLRKEKK 310 Query: 312 LWTDSAEGAKIKVFRGDSEHDEGYFVTGEISKNVQQGQSYQNHAILYRTNAQSRVIEEIL 371 LWT++ G KI F+GDSEHDE YF+ I K + Q +SY AILYRTNAQSRV+EE+ Sbjct: 311 LWTENPGGDKIMCFQGDSEHDEAYFIVDTIRKQMAQYKSYDKFAILYRTNAQSRVVEEVF 370 Query: 372 IKSDIPYQIVGGIKFYDRKEIKDLLAYLRLLSNPDDDISLTRIINVPKRGLGDTTVGKLA 431 IKS++PY IVGG KFYDRKEIKD+LAYLRL+SNPDDDISL RIINVPKR +GDTTV KL Sbjct: 371 IKSNMPYTIVGGTKFYDRKEIKDILAYLRLISNPDDDISLQRIINVPKRNIGDTTVDKLQ 430 Query: 432 AAAASQGVSIFRALQTVDDLGFAGRTRNTLVEFYDMIEALHRMVEFLSVTELTEKILELS 491 A A + G S+F+A+Q +G RT N ++ F D+I L +M ++LSVTEL E++L+ S Sbjct: 431 AYANANGQSLFQAIQETAYMGLPSRTTNAILSFNDLISNLMQMTDYLSVTELVEEVLKRS 490 Query: 492 QYRLELQNENTLESRSRLENIDEFLSVTMEFEKNNEDKSLVSFLTDLALIADIDSVNDDE 551 YR L+ E TLE+++RLENI+EFLSVT EFE+ NEDKSL++FLTDLAL+ADIDS+ DD Sbjct: 491 GYRDSLKEEKTLEAQARLENIEEFLSVTQEFERKNEDKSLLAFLTDLALVADIDSLGDDG 550 Query: 552 ERSDA-----VVLMTMHSAKGLEFPTVFIIGMEEGVFPHSRAFQDNDELEEERRLAYVGI 606 + + VVLMT+HSAKGLEFP VF++G EEGVFPHSR+ D+ E+EEERRLAYVGI Sbjct: 551 AQEEVSAEGQVVLMTLHSAKGLEFPVVFLVGCEEGVFPHSRSLFDDAEMEEERRLAYVGI 610 Query: 607 TRAEKQLFLSCARMRTLFGRTTANPPSRFLDEIP 640 TRAE++L+++CARMRTLFGRT N PSRFL EIP Sbjct: 611 TRAEERLYMTCARMRTLFGRTNVNAPSRFLQEIP 644 >Q65MR3.1 Q65MR3_BACLD PcrA Length = 739 Score = 847 bits (2188), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/636 (65%), Positives = 511/636 (80%), Gaps = 4/636 (0%) Query: 10 VSRLNPPQRQAVETTEGPLLIMAGAGSGKTRVLTHRIAWLIANRKAPPWAILAITFTNKA 69 +S LN Q++AV+TT+GPLLIMAGAGSGKTRVLTHRIA+L+A ++ PW ILAITFTNKA Sbjct: 9 LSGLNKMQQEAVKTTDGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKA 68 Query: 70 AREMQDRVSKLVGPEGRDIWVSTFHSMSVRILRKDIERIGFTSNFSILDSTDQLSVIRNC 129 AREM++RV ++GP DIW+STFHSM VRILR+DI+RIG NFSILD++DQLSVI+ Sbjct: 69 AREMKERVESILGPGADDIWISTFHSMCVRILRRDIDRIGINRNFSILDTSDQLSVIKGI 128 Query: 130 MKDLNIDTKKFEPKAVQAMISAAKNELITPAQYEQKIGDYLEGLVAKVYTMYQKRLKSNN 189 +K+ NID KKF+P+++ IS+AKNELI P +YE+ G + E +V+ VY YQK+L+ N Sbjct: 129 LKERNIDPKKFDPRSILGSISSAKNELIAPEEYEKTAGGFFEQVVSDVYKDYQKKLRKNQ 188 Query: 190 SLDFDDLIMKTIELFKEVPEVLDFYQKKFKYIHVDEYQDTNRAQYMLCRMLADSHHRICV 249 SLDFDDLIM TI LF VPEVL++YQ+KF+YIHVDEYQDTNRAQY+L + +A ICV Sbjct: 189 SLDFDDLIMTTIVLFDRVPEVLEYYQRKFQYIHVDEYQDTNRAQYLLVKKMAQRFQNICV 248 Query: 250 VGDSDQSIYRWRGADITNILNFEEDYPEAKTILLEQNYRSTSNILNAANGVIALNTGRKP 309 VGDSDQSIYRWRGADI NIL+FE+DYP A ILLEQNYRST ILNAAN VI N+ RKP Sbjct: 249 VGDSDQSIYRWRGADIANILSFEKDYPNASVILLEQNYRSTKRILNAANEVIQNNSNRKP 308 Query: 310 KKLWTDSAEGAKIKVFRGDSEHDEGYFVTGEISKNVQQGQ-SYQNHAILYRTNAQSRVIE 368 K LWT++ EGAKI FRGD+E EG FV G+I + V G+ S+ + AILYRTNAQSRVIE Sbjct: 309 KNLWTENDEGAKISYFRGDNEFGEGQFVAGKIRELVGSGKRSFSDIAILYRTNAQSRVIE 368 Query: 369 EILIKSDIPYQIVGGIKFYDRKEIKDLLAYLRLLSNPDDDISLTRIINVPKRGLGDTTVG 428 E L+K++I Y IVGG KFYDRKEIKD+LAYLRL++NPDDDIS RI+NVPKRG+G T+V Sbjct: 369 ETLMKANINYNIVGGTKFYDRKEIKDILAYLRLVANPDDDISFARIVNVPKRGVGATSVD 428 Query: 429 KLAAAAASQGVSIFRALQTVDDLGFAGRTRNTLVEFYDMIEALHRMVEFLSVTELTEKIL 488 K+AA A G+S+F AL VD +G + R N L EF IE L M E+LSVTELTE+IL Sbjct: 429 KIAAYADMNGMSLFEALGQVDFIGLSARAANALDEFRQTIENLTNMQEYLSVTELTEEIL 488 Query: 489 ELSQYRLELQNENTLESRSRLENIDEFLSVTMEFEKNNEDKSLVSFLTDLALIADIDSVN 548 E ++YR L+ E +LE++SRLENIDEFLSVT FE+ +EDKSLV+FLTDLALIADID ++ Sbjct: 489 EKTEYREMLKAEKSLEAQSRLENIDEFLSVTKNFEQQSEDKSLVAFLTDLALIADIDQLD 548 Query: 549 DDEERS---DAVVLMTMHSAKGLEFPTVFIIGMEEGVFPHSRAFQDNDELEEERRLAYVG 605 EE + DAV+LMT+H+AKGLEFP VF++G+EEGVFPHSR+ + E+EEERRLAYVG Sbjct: 549 QKEEETGNQDAVILMTLHAAKGLEFPVVFLMGLEEGVFPHSRSLMEEAEMEEERRLAYVG 608 Query: 606 ITRAEKQLFLSCARMRTLFGRTTANPPSRFLDEIPE 641 ITRAE++L+L+ ARMRTLFGRT NP SRF+ EIPE Sbjct: 609 ITRAEEELYLTNARMRTLFGRTNMNPESRFIAEIPE 644 >C5D4J1.1 C5D4J1_9BACI ATP-dependent DNA helicase PcrA Length = 732 Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust. Identities = 407/634 (64%), Positives = 510/634 (80%), Gaps = 2/634 (0%) Query: 10 VSRLNPPQRQAVETTEGPLLIMAGAGSGKTRVLTHRIAWLIANRKAPPWAILAITFTNKA 69 ++ LN Q+ AV+TTEGPLLIMAGAGSGKTRVLTHRIA+L+A ++ PW ILAITFTNKA Sbjct: 9 LANLNEQQQAAVKTTEGPLLIMAGAGSGKTRVLTHRIAYLMAEKRVAPWNILAITFTNKA 68 Query: 70 AREMQDRVSKLVGPEGRDIWVSTFHSMSVRILRKDIERIGFTSNFSILDSTDQLSVIRNC 129 AREM++RV L+G +IW+STFHSM VRILR+DI+RIG NFSILD+TDQLSV++N Sbjct: 69 AREMKERVQGLLGGAAEEIWISTFHSMCVRILRRDIDRIGIDRNFSILDTTDQLSVLKNI 128 Query: 130 MKDLNIDTKKFEPKAVQAMISAAKNELITPAQYEQKIGDYLEGLVAKVYTMYQKRLKSNN 189 +K+ NID KKF+P+A+ IS AKNEL+TP ++ +K+ Y E +V+ VY YQKRL N+ Sbjct: 129 LKEKNIDPKKFDPRAILGTISNAKNELLTPEKFAKKVSSYYEKIVSDVYEEYQKRLLRNH 188 Query: 190 SLDFDDLIMKTIELFKEVPEVLDFYQKKFKYIHVDEYQDTNRAQYMLCRMLADSHHRICV 249 +LDFDDLIM TI+LF+ VPEVL+ YQ KF+YIH+DEYQDTNRAQY+L +MLA ICV Sbjct: 189 ALDFDDLIMTTIQLFERVPEVLEHYQYKFQYIHIDEYQDTNRAQYVLVKMLASRFKNICV 248 Query: 250 VGDSDQSIYRWRGADITNILNFEEDYPEAKTILLEQNYRSTSNILNAANGVIALNTGRKP 309 VGD+DQSIYRWRGADI NIL+FE+DYP AK ILLEQNYRST IL AAN VI N RKP Sbjct: 249 VGDADQSIYRWRGADIQNILSFEKDYPNAKVILLEQNYRSTKRILQAANEVIEHNVNRKP 308 Query: 310 KKLWTDSAEGAKIKVFRGDSEHDEGYFVTGEISKNVQQGQ-SYQNHAILYRTNAQSRVIE 368 KKLWT++ EG KI + +E DE FV G+I + V G+ Y + AILYRTNAQSRV+E Sbjct: 309 KKLWTENPEGQKIVYYEAMNESDEAQFVVGKIKEYVDSGKRRYSDFAILYRTNAQSRVME 368 Query: 369 EILIKSDIPYQIVGGIKFYDRKEIKDLLAYLRLLSNPDDDISLTRIINVPKRGLGDTTVG 428 E+L+KS+IPYQIVGG+KFYDRKEIKD+LAYLR+++NP+DDISL RIINVPKRG+G +++ Sbjct: 369 EVLLKSNIPYQIVGGLKFYDRKEIKDVLAYLRVIANPNDDISLLRIINVPKRGIGVSSID 428 Query: 429 KLAAAAASQGVSIFRALQTVDDLGFAGRTRNTLVEFYDMIEALHRMVEFLSVTELTEKIL 488 K+ + A+ G+S+F AL ++ +G + RT +L+EF +E ++ E++SVTEL E++L Sbjct: 429 KIVSYASENGLSVFEALGELEHIGLSARTAASLIEFRRQLEQWAQLQEYVSVTELVEEVL 488 Query: 489 ELSQYRLELQNENTLESRSRLENIDEFLSVTMEFEKNNEDKSLVSFLTDLALIADIDSVN 548 + S YR L+ E TLE++SRLENIDEFLSVT FE +EDKSL++FLTDLALI+DID +N Sbjct: 489 DKSGYREMLKAEKTLEAQSRLENIDEFLSVTKHFENVSEDKSLIAFLTDLALISDIDQLN 548 Query: 549 D-DEERSDAVVLMTMHSAKGLEFPTVFIIGMEEGVFPHSRAFQDNDELEEERRLAYVGIT 607 + + E DAVVLMT+HSAKGLEFP VF+IGMEEG+FPHSR+ D DE+EEERRLAYVGIT Sbjct: 549 ETNGENQDAVVLMTLHSAKGLEFPVVFLIGMEEGIFPHSRSLDDGDEMEEERRLAYVGIT 608 Query: 608 RAEKQLFLSCARMRTLFGRTTANPPSRFLDEIPE 641 RAE++LFL+ A+MRTLFG T NP SRF+ EIPE Sbjct: 609 RAEEELFLTSAQMRTLFGYTNINPVSRFIREIPE 642 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,796,867,570 Number of extensions: 199563945 Number of successful extensions: 536232 Number of sequences better than 1.0e-05: 4088 Number of HSP's gapped: 523911 Number of HSP's successfully gapped: 5114 Length of query: 922 Length of database: 3,060,696,203 Length adjustment: 145 Effective length of query: 777 Effective length of database: 1,694,649,028 Effective search space: 1316742294756 Effective search space used: 1316742294756 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)