BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0555.0007.p (289 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K791.1 B3K791_9BACI dTDP-4-dehydrorhamnose reductase 380 e-104 Q6WNH6.1 Q6WNH6_BACST DTDP-4-dehydrorhamnose reductase EC=1.1.1.133 353 1e-95 B1D5Q0.1 B1D5Q0_9BACL dTDP-4-dehydrorhamnose reductase 336 1e-90 Q6WNH0.1 Q6WNH0_BACST DTDP-4-dehydrorhamnose reductase EC=1.1.1.133 325 4e-87 B7DLZ3.1 B7DLZ3_9BACL dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 322 4e-86 >B3K791.1 B3K791_9BACI dTDP-4-dehydrorhamnose reductase Length = 292 Score = 380 bits (975), Expect = e-104, Method: Compositional matrix adjust. Identities = 177/286 (61%), Positives = 219/286 (76%) Query: 4 MKVLVTGSAXXXXXXXXXXXXXXXHEVLGCDRQEMDITDLDQCVEIIGGFAPDAVIHCAA 63 MKVLVTG+ H+VLGC R E+DI +L+QC +II + PD +IHCAA Sbjct: 1 MKVLVTGAQGQLGKDVVSIFKGSKHDVLGCGRNELDINNLEQCHKIIKEYQPDCIIHCAA 60 Query: 64 HTAVDVAETDIDAAYLINATGSRNVALAAEKAGAKLVYISTDYVFDGMGTQPYHEYDNTD 123 +TAVD AE+D D AY INA G+RN+A+AAE G+KL+YIS+DYVF+G PY EYD TD Sbjct: 61 YTAVDAAESDSDQAYQINAIGTRNLAIAAESVGSKLIYISSDYVFNGRSDYPYVEYDRTD 120 Query: 124 PQSIYGKSKRAGEVLVQSLSSKFFIVRTSWVYGKYGNNFVKTMLKLGQEKPLLQVVDDQK 183 PQS+YGKSK AGE+L Q+L SK+FIVRTSW +G GNNFVKTML+LGQE+ LQVV+DQK Sbjct: 121 PQSVYGKSKLAGEILTQTLCSKWFIVRTSWAFGLNGNNFVKTMLRLGQERTSLQVVNDQK 180 Query: 184 GSPTYTVDLANFLLELIQTEKYGIYHASNTEFCTWYEFTQAIFAEAEDILGLKFTAKLEP 243 GSPT+T+DLA+FLLEL TEKYG+YHASN CTWYEFTQAIF EA LGL A+L P Sbjct: 181 GSPTFTIDLASFLLELADTEKYGVYHASNQGECTWYEFTQAIFQEARKELGLPIKAELSP 240 Query: 244 CSTEQFPRPAPRPQYSVMEHLAIRTNGFQDIRPWREGLRDFLFELK 289 C+T+QFPR APRP SV+EH++IRTNGF D+ W++ L+ F+ ++K Sbjct: 241 CTTDQFPRAAPRPANSVLEHMSIRTNGFADLPHWQDALKRFIAKMK 286 >Q6WNH6.1 Q6WNH6_BACST DTDP-4-dehydrorhamnose reductase EC=1.1.1.133 Length = 281 Score = 353 bits (905), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 169/286 (59%), Positives = 213/286 (74%), Gaps = 6/286 (2%) Query: 4 MKVLVTGSAXXXXXXXXXXXXXXXHEVLGCDRQEMDITDLDQCVEIIGGFAPDAVIHCAA 63 MKV+VTG+ +EV G R+E+DIT+ DQ ++I PD VIH AA Sbjct: 1 MKVIVTGAKGQLGTDLVHLLADRGYEVYGYGREELDITNFDQVKQVISEVNPDVVIHAAA 60 Query: 64 HTAVDVAETDIDAAYLINATGSRNVALAAEKAGAKLVYISTDYVFDGMGTQPYHEYDNTD 123 +T VD+AE++ D A+LINA G+RNVA+A+E GAKLVYISTDYVFDG T PY+E+ T+ Sbjct: 61 YTKVDLAESEPDQAFLINAYGTRNVAVASEAVGAKLVYISTDYVFDGTATTPYNEFALTN 120 Query: 124 PQSIYGKSKRAGEVLVQSLSSKFFIVRTSWVYGKYGNNFVKTMLKLGQEKPLLQVVDDQK 183 P S+YGKSK AGE V+ L SKFFIVRTSWVYGK+GNNFVKTML+L QE+ L VV+DQ Sbjct: 121 PLSVYGKSKLAGEQFVRDLHSKFFIVRTSWVYGKHGNNFVKTMLRLAQERNELMVVNDQV 180 Query: 184 GSPTYTVDLANFLLELIQTEKYGIYHASNTEFCTWYEFTQAIFAEAEDILGLKFTAKLEP 243 G PTYTVDLAN +LE+IQTEKYGIYH SN+ C+WYEF +AIF EA G++ K+ P Sbjct: 181 GCPTYTVDLANCILEIIQTEKYGIYHVSNSGHCSWYEFAKAIFEEA----GIE--VKVNP 234 Query: 244 CSTEQFPRPAPRPQYSVMEHLAIRTNGFQDIRPWREGLRDFLFELK 289 C+T+ FPRPAPRP YSV EH+A+R NGF ++R WRE L++F+ ++K Sbjct: 235 CTTKDFPRPAPRPAYSVFEHMALRLNGFNEMRNWREALKEFIVQIK 280 >B1D5Q0.1 B1D5Q0_9BACL dTDP-4-dehydrorhamnose reductase Length = 292 Score = 336 bits (862), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 157/283 (55%), Positives = 204/283 (72%), Gaps = 6/283 (2%) Query: 3 KMKVLVTGSAXXXXXXXXXXXXXXXHEVLGCDRQEMDITDLDQCVEIIGGFAPDAVIHCA 62 K++V VTG+ E++G R E+DIT+L+QC ++ PDAVIHCA Sbjct: 9 KLRVAVTGANGQLGRELAMLDDNGRFEIIGLSRAELDITNLEQCRNVLAKLRPDAVIHCA 68 Query: 63 AHTAVDVAETDIDAAYLINATGSRNVALAAEKAGAKLVYISTDYVFDGMGTQPYHEYDNT 122 A+TAVD AE++ D A+ INA G+RN+A+AA + GAKL +STDYVFDG GT PY E+D T Sbjct: 69 AYTAVDKAESEPDEAFRINAAGTRNIAVAAREIGAKLCAVSTDYVFDGTGTVPYKEHDRT 128 Query: 123 DPQSIYGKSKRAGEVLVQSLSSKFFIVRTSWVYGKYGNNFVKTMLKLGQEKPLLQVVDDQ 182 +P+++YG+SK AGE V SL ++FIVRTSWV+G YGNNFVKTMLKL ++ L+VV DQ Sbjct: 129 NPRTVYGQSKLAGEQAVSSLHDRYFIVRTSWVFGAYGNNFVKTMLKLASQREQLKVVADQ 188 Query: 183 KGSPTYTVDLANFLLELIQTEKYGIYHASNTEFCTWYEFTQAIFAEAEDILGLKFTAKLE 242 GSPTYT DLA FLLEL+ TE YGIYHAS + C+W+EF QAI E+ + +++ Sbjct: 189 WGSPTYTRDLAIFLLELVSTECYGIYHASGSGVCSWFEFAQAIMEESGS------STRID 242 Query: 243 PCSTEQFPRPAPRPQYSVMEHLAIRTNGFQDIRPWREGLRDFL 285 PC+TE++PRPAPRP YSVM+H AIR+NGF +R WRE LR +L Sbjct: 243 PCTTEEYPRPAPRPHYSVMDHGAIRSNGFTPLRHWREALRHYL 285 >Q6WNH0.1 Q6WNH0_BACST DTDP-4-dehydrorhamnose reductase EC=1.1.1.133 Length = 286 Score = 325 bits (832), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 155/285 (54%), Positives = 196/285 (68%), Gaps = 6/285 (2%) Query: 1 MPKMKVLVTGSAXXXXXXXXXXXXXXXHEVLGCDRQEMDITDLDQCVEIIGGFAPDAVIH 60 M K K+LVTG+ +EV G R E+DITD Q +I P+ VIH Sbjct: 1 MSKHKILVTGAKGQLGAEMVKLLKDMEYEVYGYGRAELDITDFQQVKSVIDHIHPNVVIH 60 Query: 61 CAAHTAVDVAETDIDAAYLINATGSRNVALAAEKAGAKLVYISTDYVFDGMGTQPYHEYD 120 AA+T VD AE++ D A+ +NA G+RNV +A+E GAK VYISTDYVFDG PY+E+ Sbjct: 61 AAAYTNVDAAESEPDQAFFVNAYGTRNVVVASEHIGAKFVYISTDYVFDGTANAPYNEFA 120 Query: 121 NTDPQSIYGKSKRAGEVLVQSLSSKFFIVRTSWVYGKYGNNFVKTMLKLGQEKPLLQVVD 180 T P S+YGKSK AGE V+ L SKFFI+RTSWVYGK+GNNFVKTMLKL QE+ L VVD Sbjct: 121 FTSPISVYGKSKLAGEQFVRDLHSKFFIIRTSWVYGKHGNNFVKTMLKLAQEQKELFVVD 180 Query: 181 DQKGSPTYTVDLANFLLELIQTEKYGIYHASNTEFCTWYEFTQAIFAEAEDILGLKFTAK 240 DQ G PTYTVDLA+ + +LI TEKYG+YH SN+ C+WYEF +AIF EA Sbjct: 181 DQIGCPTYTVDLASCIFQLIHTEKYGVYHISNSGHCSWYEFAKAIFEEA------NVNIV 234 Query: 241 LEPCSTEQFPRPAPRPQYSVMEHLAIRTNGFQDIRPWREGLRDFL 285 + PC T+ +PRPA RP YSV++H+A+R NGF+++R WRE L++F+ Sbjct: 235 VNPCKTKDYPRPAQRPLYSVLDHMALRLNGFKELRHWREALKEFI 279 >B7DLZ3.1 B7DLZ3_9BACL dTDP-4-dehydrorhamnose reductase EC=1.1.1.133 Length = 281 Score = 322 bits (824), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 155/286 (54%), Positives = 200/286 (69%), Gaps = 6/286 (2%) Query: 4 MKVLVTGSAXXXXXXXXXXXXXXXHEVLGCDRQEMDITDLDQCVEIIGGFAPDAVIHCAA 63 MK+LVTG+ E++GC R EMD+T L+ E + PD VIH AA Sbjct: 1 MKILVTGAGGQLGRELVRYPKLADVEMIGCTRAEMDVTHLEAVREKLRAVRPDVVIHAAA 60 Query: 64 HTAVDVAETDIDAAYLINATGSRNVALAAEKAGAKLVYISTDYVFDGMGTQPYHEYDNTD 123 +T VD+AE+ AY +NA G+RNVA+AAE+ GAK+ YISTDYVFDG+ +PY+EYDNT+ Sbjct: 61 YTKVDLAESCPADAYRVNALGTRNVAVAAEEVGAKVCYISTDYVFDGLTDRPYNEYDNTN 120 Query: 124 PQSIYGKSKRAGEVLVQSLSSKFFIVRTSWVYGKYGNNFVKTMLKLGQEKPLLQVVDDQK 183 P S+YGKSKRAGE+LVQ L S++FIVRTSWV+GKYG NFVKT+L + L+VV DQ Sbjct: 121 PLSVYGKSKRAGEILVQGLCSRWFIVRTSWVFGKYGPNFVKTILTKARAGEPLRVVADQH 180 Query: 184 GSPTYTVDLANFLLELIQTEKYGIYHASNTEFCTWYEFTQAIFAEAEDILGLKFTAKLEP 243 GSPTYT DLA FL++L++TE YGIYHA+N C+WYEF AI EA T +EP Sbjct: 181 GSPTYTKDLARFLIDLVRTEAYGIYHATNQGQCSWYEFACAILEEA------AVTTAIEP 234 Query: 244 CSTEQFPRPAPRPQYSVMEHLAIRTNGFQDIRPWREGLRDFLFELK 289 C+T+ FPRPAPRP++SV+ + GF +RPWR+ L++FL EL+ Sbjct: 235 CTTDAFPRPAPRPKFSVLAQTMLLAEGFTPLRPWRDALQEFLRELE 280 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.407 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,612,637,465 Number of extensions: 64149768 Number of successful extensions: 148261 Number of sequences better than 1.0e-05: 1512 Number of HSP's gapped: 146749 Number of HSP's successfully gapped: 1515 Length of query: 289 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 155 Effective length of database: 1,798,280,193 Effective search space: 278733429915 Effective search space used: 278733429915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)