BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0555.0006.p (361 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q01PS0.1 Q01PS0_SOLUE Glycosyl transferase, family 2 199 3e-49 Q02CR5.1 Q02CR5_SOLUE Glycosyl transferase, family 2 173 3e-41 B7DLY4.1 B7DLY4_9BACL Glycosyl transferase family 2 169 3e-40 Q46FX3.1 Q46FX3_METBF Glycosyl transferase 149 3e-34 A7NIW6.1 A7NIW6_ROSCS Glycosyl transferase family 2 132 4e-29 >Q01PS0.1 Q01PS0_SOLUE Glycosyl transferase, family 2 Length = 349 Score = 199 bits (507), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 129/336 (38%), Positives = 171/336 (50%), Gaps = 40/336 (11%) Query: 17 TVSVHIVTYNSADDIVDCLTAVYAQDYPVQQIVVVDNASADGCAGRVRAFSDTLAAQAHS 76 VSV IVTYNS I CL +V AQ Y ++I++VDNAS DG + F D Sbjct: 6 VVSVTIVTYNSGRFIKRCLESVLAQRYQPKEIIIVDNASNDGTIDILEQFED-------- 57 Query: 77 AQQLEGGADGGLKSKVHVPSLTLLENDINTGFAPAHNQAIAATDTDYVLVLNPDLTLEPD 136 + +V+ N+ N GFA A NQAI + D+VL LNPD+ L P+ Sbjct: 58 ------------RCQVYY-------NNENIGFAAAQNQAIRMSSGDWVLTLNPDVLLLPN 98 Query: 137 YISRLIAGMEADPRIGSATGKLLLKADH------SLVDSTGLRMNRARRAFDRGAGE-PA 189 +I L+ + DP+IG+ GKLL H +VDSTG+ N R DRG+ E Sbjct: 99 FIQALVDAGQLDPKIGTVCGKLLTMTSHFEIPEKPVVDSTGIYFNPMLRHLDRGSQEVDN 158 Query: 190 AQWPESGVVFGVSGAAAMYSRRMIEDISVNGEFFDADFFAYKEDVDVAWRAELFGWLAYY 249 + + VFG + AAA+Y R M++DI+++GEFFD DFF Y+ED DVAWRA+L GW Y Sbjct: 159 GHYLQYEYVFGATAAAALYRRGMVDDIALDGEFFDTDFFVYREDADVAWRAQLMGWKCLY 218 Query: 250 DAEAVGYHERGWKTSGRDSKPMFIRRNSYINRYKMIYKNEPARTLFSTFLYSLPYEAAAH 309 A GYH R R + P I +S NR+ M KN + + + Sbjct: 219 APYARGYHVRKVLPGNRRALPPEINMHSVKNRFLMRIKNISPDLYWRNWFSITARDLMVV 278 Query: 310 GYMLLREPKLIRAWGSFWAQRRNLK---QKRKYIQA 342 LL E +RA FW RNL+ KR+ IQA Sbjct: 279 TCCLLWEHSSLRA---FWYLGRNLRGVLAKRRRIQA 311 >Q02CR5.1 Q02CR5_SOLUE Glycosyl transferase, family 2 Length = 350 Score = 173 bits (438), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 122/319 (38%), Positives = 156/319 (48%), Gaps = 37/319 (11%) Query: 17 TVSVHIVTYNSADDIVDCLTAVYAQDYPVQQIVVVDNASADGCAGRVRAFSDTLAAQAHS 76 TV + IVTYNS+ I CL +V Q IVVVDNAS D S Sbjct: 5 TVCISIVTYNSSRYIRRCLESVLKQRGVRLDIVVVDNASVD------------------S 46 Query: 77 AQQLEGGADGGLKSKVHVPSLTLLENDINTGFAPAHNQAIAATDTDYVLVLNPDLTLEPD 136 +++ G + G + +V + N N GFA A NQ I A ++VL LNPDL +E + Sbjct: 47 TREILG--EFGERIRV-------IANFQNAGFAAAQNQGIRAGRGEWVLTLNPDLLMEEN 97 Query: 137 YISRLIAGMEADPRIGSATGKLLLKAD------HSLVDSTGLRMNRARRAFDRGAGE-PA 189 +++ L E D G GKLL +DSTG+ A R FDRG E Sbjct: 98 FLALLAEAGELDSGAGVVCGKLLAIGPGFQPLAERRIDSTGIFFTPALRHFDRGWHEVDR 157 Query: 190 AQWPESGVVFGVSGAAAMYSRRMIEDISVNGEFFDADFFAYKEDVDVAWRAELFGWLAYY 249 + + VFG AAA+Y RRMI+DI++NGEFFD DFFAY+ED DVAWRA+L GW Y Sbjct: 158 GAYDRAEYVFGACAAAALYRRRMIDDIAINGEFFDPDFFAYREDADVAWRAQLLGWRCIY 217 Query: 250 DAEAVGYHERGWKTSGRDSKPMFIRRNSYINRYKMIYKNEPARTLFSTFLYSLPYEAAAH 309 AVG+H R R S I +S NR+ M KN A L + Sbjct: 218 TPAAVGWHVRSAPPGDRRSISAMINMHSVKNRFLMRVKNSTAGLYRHCLLPMAARDLVVV 277 Query: 310 GYMLLREPKLIRAWGSFWA 328 G LL E + + A FW+ Sbjct: 278 GGCLLVEQRSLPA---FWS 293 >B7DLY4.1 B7DLY4_9BACL Glycosyl transferase family 2 Length = 323 Score = 169 bits (429), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 114/332 (34%), Positives = 165/332 (49%), Gaps = 48/332 (14%) Query: 18 VSVHIVTYNSADDIVDCLTAVYAQDYPVQQIVVVDNASADGCAGRVRAFSDTLAAQAHSA 77 V V IVTYNS I CL ++ Q + +++V+DNAS DG VRA Sbjct: 11 VQVQIVTYNSESHIGRCLQSLAKQTAVIDRVLVIDNASTDGTTAIVRA------------ 58 Query: 78 QQLEGGADGGLKSKVHVPSLTLLENDINTGFAPAHNQAI---AATDTDYVLVLNPDLTLE 134 +VP L + + N G+A HNQ D V+ LNPD+ L+ Sbjct: 59 --------------ANVPVLPM---ERNVGYAAGHNQGFRRAIEHGMDVVVTLNPDVELD 101 Query: 135 PDYISRLIAGMEADPRIGSATGKLLLKADHSLVDSTGLRMNRARRAFDRGAGEPAA-QWP 193 P YI + + DP+ G+ TGKL+ + D L+DS GL M DRGAG+P +W Sbjct: 102 PQYIEIAVESLWKDPQCGAVTGKLI-RPD-GLIDSAGLEMQAFYHVRDRGAGQPDGDRWA 159 Query: 194 ESGVVFGVSGAAAMYSRRMIEDISV-NGEFFDADFFAYKEDVDVAWRAELFGWLAYYDAE 252 G V+G+ GAAA+Y +M+ DI++ NG+ FD FF YKEDV++ WRA GW +Y+ Sbjct: 160 CPGPVWGICGAAAVYRVQMLRDIALANGDIFDESFFIYKEDVELCWRATRAGWGFWYEPR 219 Query: 253 AVGYHERGWKTSGRDSKPMFIRRNSYINRYKMIYKNEPARTLFSTFLYSLPYEAAAHGYM 312 AV H RGW+ R S +S++N+ ++ ++ P +L +L E A + + Sbjct: 220 AVAVHVRGWRRGSRVSD--LAVAHSFVNQTALLVRHVPKVSL--CLALALFVEFARYVML 275 Query: 313 LLREP-------KLI-RAWGSFWAQRRNLKQK 336 + P KLI + W W RR L + Sbjct: 276 MALRPQAWAQTTKLIAKYWRHHWRVRRELSDR 307 >Q46FX3.1 Q46FX3_METBF Glycosyl transferase Length = 320 Score = 149 bits (377), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 94/290 (32%), Positives = 148/290 (51%), Gaps = 43/290 (14%) Query: 18 VSVHIVTYNSADDIVDCLTAVYAQDYPVQQIVVVDNASADGCAGRVRAFSDTLAAQAHSA 77 + + I+ +N ++ ++CL A+ YP +I+VVDN S D G V+ F D Sbjct: 6 IIIIILNWNGKENTINCLEALKLTTYPNYKIIVVDNGSTD---GSVKHFKD--------- 53 Query: 78 QQLEGGADGGLKSKVHVPSLTLLENDINTGFAPAHNQAI----AATDTDYVLVLNPDLTL 133 H P + L+EN N GFA +N AI A + Y+ +LN D + Sbjct: 54 ---------------HYPEVKLIENKKNLGFAEGNNVAIREVLARPEIKYIALLNNDTIV 98 Query: 134 EPDYISRLIAGMEADPRIGSATGKLLLKADHSLVDSTGLRMNRARRAFDRGAGEP-AAQW 192 +PD++ +L+ +E D IGS K+L ++ +D+ G+ +++ A+ +G E Q+ Sbjct: 99 KPDWLEKLVNALEYDENIGSCQPKILSLSNPDTIDAVGIYISKNGGAYQKGHNEKDLGQY 158 Query: 193 PESGVVFGVSGAAAMYSRRMIEDISVNGEFFDADFFAYKEDVDVAWRAELFGWLAYYDAE 252 ++ VFGV AA+Y +M+ I + FD DFFAY EDVD+A RA LFGW + + Sbjct: 159 DKTTEVFGVCAGAALYRVKMLNQIGI----FDKDFFAYYEDVDLAIRARLFGWKSVCVPQ 214 Query: 253 AVGYHERGWKTSGRDS--KPMFIRRNSYINRYKMIYKNEPARTLFSTFLY 300 AV YH T G DS K + RNSY ++K+ P + + S ++ Sbjct: 215 AVIYHIHS-ATLGDDSPFKTYLLERNSYY----YVFKSLPRKVILSFLIW 259 >A7NIW6.1 A7NIW6_ROSCS Glycosyl transferase family 2 Length = 332 Score = 132 bits (333), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 107/328 (32%), Positives = 148/328 (45%), Gaps = 36/328 (10%) Query: 18 VSVHIVTYNSADDIVDCLTAVYAQDYPVQQIVVVDNASADGCAGRVRAFSDTLAAQAHSA 77 +SV IVT+N + CL AV AQ P +I+VVDN S DG T A AH+ Sbjct: 2 LSVIIVTWNGRRFLDPCLRAVSAQLQPSDEIIVVDNGSVDG----------TAAWLAHAW 51 Query: 78 QQLEGGADGGLKSKVHVPSLTLLENDINTGFAPAHNQAIAATDTDYVLVLNPDLTLEPDY 137 +++ + +PS N GFA N + A + +L+LN D +E Sbjct: 52 RRVR---------LIALPS--------NLGFAGGVNVGLRAARGELLLLLNNDAFVESGC 94 Query: 138 ISRLIAGMEADPRIGSATGKLLLKADHSLVDSTGLRMNRARRAFDRGAGEPAAQWPES-G 196 + L+ M P+IG+A G L L+ S G+ R A DR +G P + Sbjct: 95 VPALVETMYQYPQIGAAAGVLTFDHRPELIASAGITARRDGLALDRWSGCNVHSLPATRQ 154 Query: 197 VVFGVSGAAAMYSRRMIEDISVNGEFFDADFFAYKEDVDVAWRAELFGWLAYYDAEAVGY 256 V G SG A+Y R M+EDI DFF Y EDVD+AWRA+L GW + A Sbjct: 155 AVMGASGGLALYRRTMLEDIG----LMAPDFFNYLEDVDLAWRAQLRGWACFLAPNARAR 210 Query: 257 HERGWKTSGRDSKPMFIRRNSYINRYKMIYKNEPARTLFSTFLYSLPYEAAAHGY-MLLR 315 H + +G P+ R NR + I + P L + + L YE A Y L R Sbjct: 211 HI--YSATGGQGSPLKQRLLGR-NRLRAIIRCFPTGVLRACLPHILAYEVLALTYAALTR 267 Query: 316 EPKLIRAWGSFWAQRRNLKQKRKYIQAK 343 +P +I RR L +R+ IQA+ Sbjct: 268 KPAMIAGRVEALRDRRTLLHERRCIQAR 295 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.133 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,080,123,684 Number of extensions: 88462396 Number of successful extensions: 201368 Number of sequences better than 1.0e-05: 513 Number of HSP's gapped: 201065 Number of HSP's successfully gapped: 513 Length of query: 361 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 224 Effective length of database: 1,770,017,148 Effective search space: 396483841152 Effective search space used: 396483841152 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)