BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0555.0003.p (311 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q3MSA0.1 Q3MSA0_9BACL Glycerophosphoryl diester phosphodiesterase 253 2e-65 B3K787.1 B3K787_9BACI Putative uncharacterized protein 251 5e-65 B0MFC0.1 B0MFC0_9FIRM Putative uncharacterized protein 163 2e-38 B0NYF2.1 B0NYF2_9CLOT Putative uncharacterized protein 161 7e-38 B6FYK4.1 B6FYK4_9CLOT Putative uncharacterized protein 143 2e-32 >Q3MSA0.1 Q3MSA0_9BACL Glycerophosphoryl diester phosphodiesterase Length = 290 Score = 253 bits (646), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 114/278 (41%), Positives = 182/278 (65%), Gaps = 2/278 (0%) Query: 28 KIIATVVMIFALISLLVITLDDRDKEPAAGFLSHRIVAHAMGGVNGHAYTNTLEAFVANY 87 ++I +V+++ LI ++ + E GF +HR+++HAMG V+G AYTN EAFV NY Sbjct: 3 RLIVSVILLM-LIGTFLLAYKGKSTEEHTGFTTHRVISHAMGAVDGLAYTNAREAFVENY 61 Query: 88 EQGTRVFEADLMLTSDGQLVARHEWSKNMSRLLGQQTVLPAAKQGTVLEYAQFMNSPILD 147 ++G+RVFE DLM TSDGQLVARHEW+++ + + Q+ + + G Y QF N+PI Sbjct: 62 KKGSRVFEVDLMFTSDGQLVARHEWTESFTEQMQQENAVATEQGGKPWSYHQFKNTPIHG 121 Query: 148 IYSPLDIDKILDLMQAYPDAYIVTDTKETNPERVTQQFRLLTEAAERRDPALLERVVPQI 207 Y+P+D +LDL++ YPDAYIVTDTKE +P ++ Q F LT A+ ++P LL R+VPQI Sbjct: 122 SYTPVDWKDVLDLLETYPDAYIVTDTKEQDPVQIKQLFAQLTRQAQEKNPELLSRIVPQI 181 Query: 208 YNQDMLGVINKVHVFPEVLYTLYQSQDSDEQVTDFAKESGVD-ITMPSDRANKSFVQKLK 266 YN++ML + ++ +P V+YT+Y+++D D+Q+ F +++ + +T+P +R + + V+ L+ Sbjct: 182 YNEEMLRTLRSIYPYPSVIYTVYRTEDKDDQIIRFVQQNDITAVTLPENRVSGALVESLR 241 Query: 267 KAGXXXXXXXXXXXXXXXXLSRLGVDGFYTDFVSEDDL 304 +AG ++GV GFYTD ++E +L Sbjct: 242 QAGAVCYVNTINELKDAAEYEQMGVRGFYTDSLTEKEL 279 >B3K787.1 B3K787_9BACI Putative uncharacterized protein Length = 293 Score = 251 bits (642), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 121/278 (43%), Positives = 183/278 (65%), Gaps = 1/278 (0%) Query: 28 KIIATVVMIFALISLLVITLDDRDKEPAAGFLSHRIVAHAMGGVNGHAYTNTLEAFVANY 87 K IA V+++F+ I +L++T + D+E GF ++R++AHAMG + YTN EA V NY Sbjct: 2 KRIAAVLLLFSAIMILLLTHLEMDEEAPQGFAAYRLIAHAMGSIGEQPYTNAYEAMVVNY 61 Query: 88 EQGTRVFEADLMLTSDGQLVARHEWSKNMSRLLGQQTVLPAAKQGTVLEYAQFMNSPILD 147 E+GTRVFE DLMLT D ++VARHEW+++M++ LGQ+ LP KQ L + +F+N+PIL+ Sbjct: 62 EKGTRVFEIDLMLTEDRKVVARHEWTESMTQQLGQREKLPDDKQAARLSHEEFINTPILE 121 Query: 148 IYSPLDIDKILDLMQAYPDAYIVTDTKETNPERVTQQFRLLTEAAERRDPALLERVVPQI 207 Y P+DI+ I+D+M+ +PD YIVTDTKE + F + AA+ RDP LL+RVV QI Sbjct: 122 QYQPMDIEGIMDMMERHPDIYIVTDTKEQKDRDIQYLFAEIVNAAKERDPKLLDRVVVQI 181 Query: 208 YNQDMLGVINKVHVFPEVLYTLYQSQDSDEQVTDFAKESGVD-ITMPSDRANKSFVQKLK 266 YN+ ML ++ ++ F ++YTLY +QDS ++T F +E+ +D +TMP + + +FV KL+ Sbjct: 182 YNEPMLDMVQDIYPFQSIIYTLYATQDSPAEITAFVQENHIDAVTMPEYKVSPNFVAKLR 241 Query: 267 KAGXXXXXXXXXXXXXXXXLSRLGVDGFYTDFVSEDDL 304 +AG + GV G Y+D ++E +L Sbjct: 242 QAGAVTYVHTINDTNTVNNYEKWGVYGVYSDLLTEPEL 279 >B0MFC0.1 B0MFC0_9FIRM Putative uncharacterized protein Length = 348 Score = 163 bits (413), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 89/256 (34%), Positives = 142/256 (55%), Gaps = 11/256 (4%) Query: 52 KEPAAGFLSHRIVAHAMGGVNGHAYTNTLEAFVANYEQGTRVFEADLMLTSDGQLVARHE 111 K+ + + +R VAHA+G ++G YTN+ +AF+ +Y+ G RVFEADLM T+D +VARH Sbjct: 81 KKESKQWYDYRAVAHALGEIDGKEYTNSKDAFLNSYQNGFRVFEADLMQTTDHVMVARHY 140 Query: 112 WSKNMSRLLGQQTVLPAAKQGTVLEYAQFMNSPILDIYSPLDIDKILDLMQAYPDAYIVT 171 W K++S P +K G + YA+F N + Y+ + + ++ +LM YPD YI+T Sbjct: 141 WGKDLSD--------PKSKGGKPVSYAKFKNIKLYGKYTSVSLKELFELMDKYPDTYIIT 192 Query: 172 DTKETNPERVTQQFRLLTEAA-ERRDPALLERVVPQIYNQDMLGVINKVHVFPEVLYTLY 230 DTK+++ F ++ + A E + LL+R++ QIYNQ M I +VH F LYT Y Sbjct: 193 DTKDSDAAAAKNDFSVIVKTAKEMKKEYLLDRLIVQIYNQPMYHAIKQVHPFRHFLYTTY 252 Query: 231 QSQD-SDEQVTDFAKESGVD-ITMPSDRANKSFVQKLKKAGXXXXXXXXXXXXXXXXLSR 288 Q D + ++ F +G++ +T+P N ++ L AG + Sbjct: 253 QQTDVAFSKMIRFCTSNGIEAVTVPVSSVNDYRMKLLSDAGLYSFTHTVNSVYEAKEYMK 312 Query: 289 LGVDGFYTDFVSEDDL 304 LGV G YTDF++ ++ Sbjct: 313 LGVYGVYTDFLTNAEV 328 >B0NYF2.1 B0NYF2_9CLOT Putative uncharacterized protein Length = 351 Score = 161 bits (408), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 139/254 (54%), Gaps = 11/254 (4%) Query: 50 RDKEPAAGFLSHRIVAHAMGGVNGHAYTNTLEAFVANYEQGTRVFEADLMLTSDGQLVAR 109 ++K + ++ +AHAMGG++G Y N+++ F Y++G RVFE D++LT D + + Sbjct: 76 KEKTTLKPWYTYHSIAHAMGGLDGKDYLNSIDGFYPAYQKGYRVFEMDILLTKDNVAIGK 135 Query: 110 HEWSKNMSRLLGQQTVLPAAKQGTVLEYAQFMNSPILDIYSPLDIDKILDLMQAYPDAYI 169 H+W + +S P +K+G + Y +F N+ I Y+P +L+LM+ YPD Y+ Sbjct: 136 HQWGRKLSD--------PTSKKGDPVSYRKFKNTKIYGKYTPTSFLDVLNLMEKYPDFYL 187 Query: 170 VTDTKETNPERVTQQFRLLTEAAERRDPA-LLERVVPQIYNQDMLGVINKVHVFPEVLYT 228 +TD+K T P ++F +L + A++ LL+RV+ Q+YNQ M + VH F +YT Sbjct: 188 MTDSKSTEPADAKKEFNVLVQTAKKVGKEDLLDRVIVQVYNQRMYWAVKSVHPFKHFVYT 247 Query: 229 LYQSQDSD-EQVTDFAKESGVD-ITMPSDRANKSFVQKLKKAGXXXXXXXXXXXXXXXXL 286 Y+ D+ +V F K++G++ IT P + N ++ L K G Sbjct: 248 TYKQPDAAFYKVVKFCKQNGIEAITSPKNDINDYRMELLAKQGIYSYTHSVNNAYFAKEF 307 Query: 287 SRLGVDGFYTDFVS 300 +LGV G Y+DF+S Sbjct: 308 MKLGVYGVYSDFLS 321 >B6FYK4.1 B6FYK4_9CLOT Putative uncharacterized protein Length = 437 Score = 143 bits (360), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 74/242 (30%), Positives = 132/242 (54%), Gaps = 7/242 (2%) Query: 61 HRIVAHAMGGVNGHAYTNTLEAFVANYEQGTRVFEADLMLTSDGQLVARHEWSKNMSRLL 120 ++ +AHAMGG++ YTN+L+AF NY+ G RVFE D+ LTSDGQ V H W + + L Sbjct: 181 NKYIAHAMGGIDKKVYTNSLDAFEYNYKLGYRVFEIDVALTSDGQPVLLHSWDEPRLKEL 240 Query: 121 GQQTVLPAAKQGTVLEYAQFMNSPILDIYSPLDIDKILDLMQAYPDAYIVTDTKETNPER 180 G LP + + +F+N+ + +Y P+ ++ +L + Y D V D K + + Sbjct: 241 G----LPTSWNKNRPNFNEFINTEVCGVYKPMSFREVCELSKKYKDVRFVIDVK-GDQQM 295 Query: 181 VTQQFRLLTEAAERRDPALLERVVPQIYNQDMLGVINKVHVFPEVLYTLYQSQDSDEQ-V 239 + ++ + A+ D +L++ +PQIY++ ML + + F ++YTLY+ + + Q V Sbjct: 296 CKEVYKKCVKIAKEVDGKVLDKFIPQIYDEKMLNDVMATYDFKSMIYTLYKQEKLNAQEV 355 Query: 240 TDFAKESGVD-ITMPSDRANKSFVQKLKKAGXXXXXXXXXXXXXXXXLSRLGVDGFYTDF 298 DF+ E+G+ + + ++ N F+++LK+ G L +G G Y+DF Sbjct: 356 IDFSYENGIKVVVIDKEKLNSKFIKELKQRGIYVYVNTYNDTTKIKELFGMGAKGIYSDF 415 Query: 299 VS 300 ++ Sbjct: 416 IN 417 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,659,710,067 Number of extensions: 62382146 Number of successful extensions: 157267 Number of sequences better than 1.0e-05: 17 Number of HSP's gapped: 157264 Number of HSP's successfully gapped: 17 Length of query: 311 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 176 Effective length of database: 1,788,859,178 Effective search space: 314839215328 Effective search space used: 314839215328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)