BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0017.p (193 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q184R1.1 Q184R1_CLOD6 Putative membrane protein 164 3e-39 C0BWE2.1 C0BWE2_9CLOT Putative uncharacterized protein 155 2e-36 B6FRE7.1 B6FRE7_9CLOT Putative uncharacterized protein 154 5e-36 B6FZT2.1 B6FZT2_9CLOT Putative uncharacterized protein 148 2e-34 B0NDX9.1 B0NDX9_EUBSP Putative uncharacterized protein 147 6e-34 >Q184R1.1 Q184R1_CLOD6 Putative membrane protein Length = 188 Score = 164 bits (416), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 83/185 (44%), Positives = 120/185 (64%), Gaps = 2/185 (1%) Query: 8 ITLGALAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXXXXXXXXXXXS 67 +T ++ I IN++ G V+S + IP LFLDTVGT+ A V GP WGA S Sbjct: 6 VTFSSMCIVINIVLGMVISMINIPLLFLDTVGTVLGAVVLGPFWGALIGGCTNLVLGVIS 65 Query: 68 GYTAIPFALVNVIVGLVVGYASRKKGFTFSSALVSGIILGILCPAVGSVIAIGLFGGLTG 127 G T IPFALVN+++GL+VGY S+KKGF + A+++G+IL I+CP +G+ I++ LFGGL+G Sbjct: 66 GPTNIPFALVNIVLGLIVGYISKKKGFGYKEAIITGVILSIVCPLIGTPISVLLFGGLSG 125 Query: 128 GVQDVAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLPHSLIKRPALKKK 187 D+ V +L Q+G +F AAF PR+ N++DK LS ++V Y + +P IK+ K Sbjct: 126 SGADLLVGFLVQSGQKIFTAAFFPRILSNIVDKPLSCIMVVYFINKMPKGFIKQ--YSKS 183 Query: 188 DSSRA 192 SS + Sbjct: 184 TSSYS 188 >C0BWE2.1 C0BWE2_9CLOT Putative uncharacterized protein Length = 192 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 83/193 (43%), Positives = 126/193 (65%), Gaps = 4/193 (2%) Query: 1 MNQK---TLVITLGALAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXX 57 MN++ T + + LAIA+N++ G V++ K P ++LDT+GTIFIA FGP +GA Sbjct: 1 MNREISGTTKLMMCGLAIAVNIVLGIVMAAAKFP-VYLDTIGTIFIAVYFGPWYGAAVGG 59 Query: 58 XXXXXXXXXSGYTAIPFALVNVIVGLVVGYASRKKGFTFSSALVSGIILGILCPAVGSVI 117 G + +PF LVN+ VGLV+G K FTF + +++GII GI+ P +G+ I Sbjct: 60 ATNFLTALLYGMSDMPFMLVNIAVGLVIGLLFCKVKFTFLNVVIAGIIAGIVAPVIGTPI 119 Query: 118 AIGLFGGLTGGVQDVAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLPHS 177 I ++GGLTG + DVAV+WLKQ+G S+F A+FLP+L NL+DK S LL++ +VK +P + Sbjct: 120 GIAVYGGLTGTISDVAVIWLKQSGASIFTASFLPKLANNLVDKTGSCLLIFLLVKAMPGA 179 Query: 178 LIKRPALKKKDSS 190 L + ++K+ + Sbjct: 180 LKPKCWMRKRAEA 192 >B6FRE7.1 B6FRE7_9CLOT Putative uncharacterized protein Length = 200 Score = 154 bits (388), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 91/191 (47%), Positives = 125/191 (65%), Gaps = 5/191 (2%) Query: 1 MNQK---TLVITLGALAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXX 57 MN++ T + L LAIA+N++ G V + LK PF +LD +GTIFIA FGP +GA Sbjct: 10 MNKEISGTTRLVLCGLAIALNIVLGIVTAALKFPF-YLDVMGTIFIAIYFGPWYGAVVGA 68 Query: 58 XXXXXXXXXSG-YTAIPFALVNVIVGLVVGYASRKKGFTFSSALVSGIILGILCPAVGSV 116 SG +T +PF LV+++V L+VG+ RK F F +ALV GII GI P VG+ Sbjct: 69 LTNILTSLFSGSFTGMPFMLVSIVVALIVGFVFRKVKFNFVTALVVGIITGIAAPVVGTP 128 Query: 117 IAIGLFGGLTGGVQDVAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLPH 176 I I ++GGLTG + DVAV++LKQ+G +FAA+F+P+L NL+DKI S L+VY VV +LP Sbjct: 129 IGIAVYGGLTGTISDVAVMFLKQSGAGIFAASFIPKLFNNLLDKIGSILIVYLVVLSLPG 188 Query: 177 SLIKRPALKKK 187 +L + K K Sbjct: 189 NLKPKCFGKNK 199 >B6FZT2.1 B6FZT2_9CLOT Putative uncharacterized protein Length = 185 Score = 148 bits (374), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 76/181 (41%), Positives = 114/181 (62%), Gaps = 2/181 (1%) Query: 1 MNQKTLVITLGALAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXXXXX 60 MN K L T A+ + +N++ GTV+ ++IP LFLDT+GTI A V GPLWGA Sbjct: 1 MNTKKL--TFSAMCVVVNLVLGTVMGMIQIPLLFLDTIGTILGAVVLGPLWGALIGGCSN 58 Query: 61 XXXXXXSGYTAIPFALVNVIVGLVVGYASRKKGFTFSSALVSGIILGILCPAVGSVIAIG 120 S T IPFA+VN+ GL+VG+ ++K F + A+++GIIL ++CP +G+ I++ Sbjct: 59 LVLGVISDPTNIPFAIVNIATGLIVGFMAKKGNFGYKKAIITGIILAVVCPMIGTPISVY 118 Query: 121 LFGGLTGGVQDVAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLPHSLIK 180 +FGGL+G D+ V QAG +F AAF+PR+ N++DK LS LLV + +P + + Sbjct: 119 MFGGLSGSGADLLVGAFLQAGQQIFTAAFIPRILSNIVDKPLSCLLVVLFISKMPKNFLA 178 Query: 181 R 181 + Sbjct: 179 Q 179 >B0NDX9.1 B0NDX9_EUBSP Putative uncharacterized protein Length = 192 Score = 147 bits (370), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 86/195 (44%), Positives = 134/195 (68%), Gaps = 6/195 (3%) Query: 1 MNQK---TLVITLGALAIAINVIAGTVVSNLKIPFLFLDTVGTIFIAAVFGPLWGAXXXX 57 MN++ T+ + + LAIAIN++ G V++ +K P ++LDT+GTIFIA FGP +GA Sbjct: 1 MNKEISNTMKLMMCGLAIAINIVLGIVMAMIKFP-VYLDTIGTIFIAIYFGPWYGAAVGG 59 Query: 58 XXXXXXXXXSGYTAIPFALVNVIVGLVVGYASRKKGFTFSSALVSGIILGILCPAVGSVI 117 +G T +PF LVN+ +GLV+G+ RK FT + +++GI +GI+ P +G+ I Sbjct: 60 LTNFLTAILNGMTDMPFMLVNIAIGLVIGFIFRKARFTLVNVVIAGIAIGIIAPIIGTPI 119 Query: 118 AIGLFGGLTGGVQDVAVLWLKQAGTSLFAAAFLPRLGENLIDKILSALLVYYVVKNLPHS 177 I ++GGLTG + DVAV+WLKQ+G S+FAA+FLP+L NL+DKI S L++Y ++K++P + Sbjct: 120 GIAVYGGLTGTISDVAVVWLKQSGASIFAASFLPKLANNLVDKIGSCLIIYLLIKSMPAT 179 Query: 178 LIKRPALKKKDSSRA 192 L +PA + ++A Sbjct: 180 L--KPACMLQRKAKA 192 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.325 0.142 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 990,842,017 Number of extensions: 37669828 Number of successful extensions: 169852 Number of sequences better than 1.0e-05: 213 Number of HSP's gapped: 169432 Number of HSP's successfully gapped: 213 Length of query: 193 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 65 Effective length of database: 1,854,806,283 Effective search space: 120562408395 Effective search space used: 120562408395 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)