BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0014.p (220 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B2A4Q3.1 B2A4Q3_NATTJ ABC transporter related 197 6e-49 B1V791.1 B1V791_CLOPE Cobalt ABC transporter, ATP-binding protein 192 1e-47 B1RPI3.1 B1RPI3_CLOPE Cobalt ABC transporter, ATP-binding protein 192 1e-47 B1RBM7.1 B1RBM7_CLOPE Cobalt ABC transporter, ATP-binding protein 192 1e-47 B1BQN1.1 B1BQN1_CLOPE Cobalt ABC transporter, ATP-binding protein 192 1e-47 >B2A4Q3.1 B2A4Q3_NATTJ ABC transporter related Length = 290 Score = 197 bits (501), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 96/200 (48%), Positives = 136/200 (68%), Gaps = 2/200 (1%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDP--HLNRQPEQF 59 L + LT++KGE + G +GSGKST +Q L P+ G + +DG D + N+ + Sbjct: 23 LHDINLTIEKGEFTGIIGHTGSGKSTLIQHFNALLYPTAGRVLIDGIDTAQNKNKLKDIR 82 Query: 60 DRIGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDRSP 119 ++G +FQYPEHQLF TV EDIAFG ++ LS + E +++ AM+ V L Y +FKDRSP Sbjct: 83 QKVGLVFQYPEHQLFEETVAEDIAFGPKNLNLSEQEVEERIKSAMETVALPYEEFKDRSP 142 Query: 120 FELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWVS 179 FELSGG+ RRVAIAGV+ + PEVLI+DEPTAGLD Q R A+ D + + ++E G+TII V+ Sbjct: 143 FELSGGQMRRVAIAGVLAMRPEVLIMDEPTAGLDPQGRRAILDQIRSFHKELGLTIILVT 202 Query: 180 HQLEEILEHAARMIALMAGQ 199 H +E++ A R+I + G+ Sbjct: 203 HSMEDVARLAERLIVMHQGK 222 >B1V791.1 B1V791_CLOPE Cobalt ABC transporter, ATP-binding protein Length = 285 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 4/206 (1%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFD- 60 L + ++ GE +A+ G +GSGKSTF+Q L G LSP+ GN+ +DG + +++ + D Sbjct: 23 LNNINCEIEDGEFVALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIA-DKKVKLSDI 81 Query: 61 --RIGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDRS 118 ++G +FQYPE+QLF T+ +DI +G R+ +S E +V+K+M+ V LDY +KD+S Sbjct: 82 RKKVGLVFQYPEYQLFEETIEKDIEYGPRNLGISEEEISKRVKKSMEMVGLDYETYKDKS 141 Query: 119 PFELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWV 178 PF+LSGG+KRRVAIAGV+ +EP+VLILDEPTAGLD + R + + +++E G+TII V Sbjct: 142 PFDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPKGREDILAQIRLLHKEYGMTIIMV 201 Query: 179 SHQLEEILEHAARMIALMAGQXXXXG 204 SH +E++ + A R+I + +G+ G Sbjct: 202 SHSMEDVAKIADRVIVMNSGEIVLDG 227 >B1RPI3.1 B1RPI3_CLOPE Cobalt ABC transporter, ATP-binding protein Length = 285 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 4/206 (1%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFD- 60 L + ++ GE +A+ G +GSGKSTF+Q L G LSP+ GN+ +DG + +++ + D Sbjct: 23 LNNINCEIEDGEFVALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIA-DKKVKLSDI 81 Query: 61 --RIGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDRS 118 ++G +FQYPE+QLF T+ +DI +G R+ +S E +V+K+M+ V LDY +KD+S Sbjct: 82 RKKVGLVFQYPEYQLFEETIEKDIEYGPRNLGISEEEISKRVKKSMEMVGLDYETYKDKS 141 Query: 119 PFELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWV 178 PF+LSGG+KRRVAIAGV+ +EP+VLILDEPTAGLD + R + + +++E G+TII V Sbjct: 142 PFDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPKGREDILAQIRLLHKEYGMTIIMV 201 Query: 179 SHQLEEILEHAARMIALMAGQXXXXG 204 SH +E++ + A R+I + +G+ G Sbjct: 202 SHSMEDVAKIADRVIVMNSGEIVLDG 227 >B1RBM7.1 B1RBM7_CLOPE Cobalt ABC transporter, ATP-binding protein Length = 285 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 4/206 (1%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFD- 60 L + ++ GE +A+ G +GSGKSTF+Q L G LSP+ GN+ +DG + +++ + D Sbjct: 23 LNNINCEIEDGEFVALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIA-DKKVKLSDI 81 Query: 61 --RIGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDRS 118 ++G +FQYPE+QLF T+ +DI +G R+ +S E +V+K+M+ V LDY +KD+S Sbjct: 82 RKKVGLVFQYPEYQLFEETIEKDIEYGPRNLGISEEEISKRVKKSMEMVGLDYETYKDKS 141 Query: 119 PFELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWV 178 PF+LSGG+KRRVAIAGV+ +EP+VLILDEPTAGLD + R + + +++E G+TII V Sbjct: 142 PFDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPKGREDILAQIRLLHKEYGMTIIMV 201 Query: 179 SHQLEEILEHAARMIALMAGQXXXXG 204 SH +E++ + A R+I + +G+ G Sbjct: 202 SHSMEDVAKIADRVIVMNSGEIVLDG 227 >B1BQN1.1 B1BQN1_CLOPE Cobalt ABC transporter, ATP-binding protein Length = 285 Score = 192 bits (489), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/206 (45%), Positives = 143/206 (69%), Gaps = 4/206 (1%) Query: 2 LGKLQLTVDKGEMLAVAGKSGSGKSTFLQLLKGFLSPSEGNLYLDGTDPHLNRQPEQFD- 60 L + ++ GE +A+ G +GSGKSTF+Q L G LSP+ GN+ +DG + +++ + D Sbjct: 23 LNNINCEIEDGEFVALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIA-DKKVKLSDI 81 Query: 61 --RIGFIFQYPEHQLFSTTVYEDIAFGLRSAKLSPEIQEAKVRKAMQAVQLDYGKFKDRS 118 ++G +FQYPE+QLF T+ +DI +G R+ +S E +V+K+M+ V LDY +KD+S Sbjct: 82 RKKVGLVFQYPEYQLFEETIEKDIEYGPRNLGISEEEISKRVKKSMEMVGLDYETYKDKS 141 Query: 119 PFELSGGEKRRVAIAGVVVLEPEVLILDEPTAGLDLQSRTALFDLLHAMNREQGITIIWV 178 PF+LSGG+KRRVAIAGV+ +EP+VLILDEPTAGLD + R + + +++E G+TII V Sbjct: 142 PFDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPKGREDILAQIRLLHKEYGMTIIMV 201 Query: 179 SHQLEEILEHAARMIALMAGQXXXXG 204 SH +E++ + A R+I + +G+ G Sbjct: 202 SHSMEDVAKIADRVIVMNSGEIVLDG 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,250,098,805 Number of extensions: 50613789 Number of successful extensions: 427958 Number of sequences better than 1.0e-05: 96050 Number of HSP's gapped: 315921 Number of HSP's successfully gapped: 104450 Length of query: 220 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 90 Effective length of database: 1,835,964,253 Effective search space: 165236782770 Effective search space used: 165236782770 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)