BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0011.p (428 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6NQ00.1 A6NQ00_9BACE Putative uncharacterized protein 301 6e-80 A8RPX1.1 A8RPX1_9CLOT Putative uncharacterized protein 286 2e-75 B7Y140.1 B7Y140_RUMHA Putative uncharacterized protein 278 6e-73 A8W0U1.1 A8W0U1_9BACI SUF system FeS assembly protein, NifU family 277 2e-72 Q67SW9.1 Q67SW9_SYMTH RNA polymerase sigma-54 factor 276 4e-72 >A6NQ00.1 A6NQ00_9BACE Putative uncharacterized protein Length = 459 Score = 301 bits (772), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 174/455 (38%), Positives = 254/455 (55%), Gaps = 29/455 (6%) Query: 1 MRLVMDTKQKMGLSPGLRQSVEVLQMDSQELDQYVHRLSEENPLIEV--QYXXXXXXXXX 58 M L M+ +Q LSP + QS+E+LQM SQEL +++ ++ NP++EV +Y Sbjct: 1 MELSMNLRQTQTLSPQMVQSMEILQMGSQELLEFIEETTQANPVLEVDEKYDRQDEFDLM 60 Query: 59 XXXTQHL---------------------LQYAAGPRHSLQDQLR---SQLALLPLTKSER 94 + L + G + +D R SQL +L L + Sbjct: 61 RRKLEWLESTDVQNSWYHRQDAEEDADPMANYGGVENGEEDLYRYVLSQLGMLSLERDVM 120 Query: 95 PLAAYLIGCLDDNGYFAEQVEVVAAGLGVGCQVIEAGLRRVQSLEPYGVGARNLQECLLL 154 A +++ L+ NG+ + V +AA G G V+E L VQSLEP GV ARNL ECL L Sbjct: 121 AAAVFVVESLNQNGWLDDDVPALAAAFGCGQSVMERALEAVQSLEPAGVAARNLSECLRL 180 Query: 155 QLEHSGRLTPLLRLLIEHHLEQLGGNQLVRVAKELNTSLKRVQEAYSTIKSLNPRPAYAL 214 QL G L ++EHHL+ L ++ +AKEL S + V+EA + IK+LNP+P Sbjct: 181 QLLRRGEGNALALEIVEHHLDALARSRFGLIAKELGASAEEVREACALIKTLNPKPGTGF 240 Query: 215 DNGESTVYIVPDVYVMQKNGAHEAAVHPLSCPQITLAESYQRLLSLSGDEETRRYLQEKH 274 E YI PD+ V+ E + P + ++ YQ+L+ + D+E + YL +K Sbjct: 241 AAREHLTYINPDIIVVSFPDHFEVLANDYFFPSLHMSGYYQQLMKDTDDQEVKDYLTDKV 300 Query: 275 EQASWIMRCLEERKKTLCRVAGAILKLQRPFFERGQDYLVPLTLGRIAEELELHESTVSR 334 QA W++R +E+R+ TL A IL LQ PFF +G +L P++L +A+ LE+HESTVSR Sbjct: 301 RQAKWVVRSIEQRRSTLLSCAQCILALQEPFFRQGPGHLSPMSLADVAQRLEVHESTVSR 360 Query: 335 AVRGKYMQCVWGTFELKYFFPSGITGE---DSDWTPDALKRVIRELIEGEDKQAAYSDRR 391 A+R KY+QC G + L YFF G+ G + +P+A K ++R+LIE EDK +SD++ Sbjct: 361 AIRDKYLQCSMGVYPLSYFFSRGLGGSGDGEEGASPEAAKILLRKLIEEEDKAHPHSDQK 420 Query: 392 IAELLLEQGAVISRRTVAKYRESMRIASAPGRREY 426 + EL+ EQG ISRRTVAKYR+ + I S GRR+Y Sbjct: 421 LRELMGEQGCTISRRTVAKYRDELGIPSTTGRRQY 455 >A8RPX1.1 A8RPX1_9CLOT Putative uncharacterized protein Length = 461 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 170/461 (36%), Positives = 244/461 (52%), Gaps = 36/461 (7%) Query: 1 MRLVMDTKQKMGLSPGLRQSVEVLQMDSQELDQYVHRLSEENPLIEVQYXXXXXXXXXXX 60 M L + KQ LS + QS E+LQM SQEL+ Y++ L+ ENP+I++ Sbjct: 1 MDLKLQVKQTQTLSQRMIQSAEILQMTSQELNTYINELALENPVIDIVEPPTAEEQRESI 60 Query: 61 XTQHLLQYAAGPRH--------------------------SLQDQLRSQLALLPLTKSER 94 Q L + +LQD L SQL T E Sbjct: 61 EQQEWLNSFNEENYYLYQRQNNDDDYDFKSSWNINTDDGETLQDYLWSQLITENFTDQET 120 Query: 95 PLAAYLIGCLDDNGYFAEQVEVVAAGLGVGCQVIEAGLRRVQSLEPYGVGARNLQECLLL 154 + +++ CLD+ GY E E +A+ G +++E L +Q+L+P GV AR L+ECL L Sbjct: 121 EIIKFMLECLDNKGYLEESTETIASYFGTDTEIVEDLLSDLQALDPSGVCARTLEECLKL 180 Query: 155 QLEHSGRLTPLLRLLIEHHLEQLGGNQLVRVAKELNTSLKRVQEAYSTIKSLNPRPAYAL 214 QLE LTP+L +I++ LE + NQ+ +A++L S IKSLNP+P + Sbjct: 181 QLERRDILTPVLESIIDNCLEMVAKNQIPAIARKLRLSPTETAGYCQIIKSLNPKPGVSF 240 Query: 215 DNGESTVYIVPDVYVMQKNGAHEAAVHPLSCPQITLAESYQRLLSLSGDEETRRYLQEKH 274 + + YI+PDV +++ + ++ P I L Y+++ E + YL K Sbjct: 241 SSRDQLRYIIPDVTIVKFKDHFDILLNESMYPTIELNSYYRQMNQNPESSELKEYLGNKI 300 Query: 275 EQASWIMRCLEERKKTLCRVAGAILKLQRPFFERGQDYLVPLTLGRIAEELELHESTVSR 334 QA W+ +C+ +R KTL +V+ AIL+ Q FF G +L PL L IA+EL++HESTVSR Sbjct: 301 RQAEWVKQCVTQRGKTLMQVSRAILEHQEEFFTFGPAHLNPLRLADIAQELDIHESTVSR 360 Query: 335 AVRGKYMQCVWGTFELKYFFPSGIT---------GEDSDWTPDALKRVIRELIEGEDKQA 385 AV KY+QC WG + + +FF + G S D +KRV+RE+IE E+K+ Sbjct: 361 AVSKKYLQCSWGVYPMNFFFSRSVAVQESSSSESGTQSVTAAD-IKRVLREIIEEENKKK 419 Query: 386 AYSDRRIAELLLEQGAVISRRTVAKYRESMRIASAPGRREY 426 YSDR + E L E+G ISRRTVAKYRE IA A GR+EY Sbjct: 420 PYSDRLLGEKLAERGISISRRTVAKYREEEGIADASGRKEY 460 >B7Y140.1 B7Y140_RUMHA Putative uncharacterized protein Length = 438 Score = 278 bits (712), Expect = 6e-73, Method: Compositional matrix adjust. Identities = 166/445 (37%), Positives = 251/445 (56%), Gaps = 30/445 (6%) Query: 5 MDTKQKMGL----SPGLRQSVEVLQMDSQELDQYVHRLSEENPLIEVQYXXXXXXXXXXX 60 M+ KQ++ + S + Q+V +LQM + +L +YV ENP+IE++ Sbjct: 1 MELKQELEIQARVSQEMVQAVSILQMTAWDLKEYVQEAMLENPVIELEETTRKQDNEEIV 60 Query: 61 XT---------QHLLQYAAGPRHS----------LQDQLRSQLALLPLTKSERPLAAYLI 101 Q+ + Y S L++ L Q+A + L K + Y+I Sbjct: 61 RKLEWMENGDYQNKVYYQQELEESNEFWEENEPDLREYLLEQMAFMDLDKKAASIIRYMI 120 Query: 102 GCLDDNGYFAEQVEVVAAGLGVGCQVIEAGLRRVQSLEPYGVGARNLQECLLLQLEHSGR 161 LD+ GY E E +A LG + I+ + + ++EP GVGA NLQECLL+QL G Sbjct: 121 QSLDERGYLLENEEEIADILGRSLEEIQRARQILCTMEPLGVGALNLQECLLIQLRKKG- 179 Query: 162 LTPLLRLLIEHHLEQLGGNQLVRVAKELNTSLKRVQEAYSTIKSLNPRPAYALDNGESTV 221 T L ++E+++E+ G NQL ++ K+ LK + +A IK NP+PA Sbjct: 180 CTSLACEIVENYIEEFGKNQLSKIVKKTGRDLKEIAQACEQIKEQNPKPAGYFPARPYKN 239 Query: 222 YIVPDVYVMQKNGAHEAAVHPLSCPQITLAESYQRLLSLSGDEETRRYLQEKHEQASWIM 281 YI+PDV V++ E V+ P+I ++ Y++++ G EET +Y++EK QA W+ Sbjct: 240 YIIPDVIVVKLKDYFEILVNDYDSPEIFISPFYRQMMREQG-EETGKYIKEKIRQAEWLK 298 Query: 282 RCLEERKKTLCRVAGAILKLQRPFFERGQDYLVPLTLGRIAEELELHESTVSRAVRGKYM 341 C+E+R +TL ++ IL+ Q FF+RG++YL P+T AE+L++H ST+SRAV+GKY+ Sbjct: 299 SCIEQRNRTLLQLTEEILRSQTEFFQRGKNYLKPMTQKEAAEKLQVHPSTISRAVQGKYL 358 Query: 342 QCVWGTFELKYFFPSGITGEDSDWTPDALKRVIRELIEGEDKQAAYSDRRIAELLLEQGA 401 QC WG F L +FF SG T + +++ + LKR+ IE EDK+ YSDR +AE L E Sbjct: 359 QCTWGMFPLSFFFSSG-TDKGAEYIKECLKRI----IENEDKKNPYSDRVLAEKLQEMDI 413 Query: 402 VISRRTVAKYRESMRIASAPGRREY 426 ISRRT+AKYR SM I+ A GR+EY Sbjct: 414 DISRRTIAKYRNSMHISEALGRKEY 438 >A8W0U1.1 A8W0U1_9BACI SUF system FeS assembly protein, NifU family Length = 444 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 167/444 (37%), Positives = 243/444 (54%), Gaps = 29/444 (6%) Query: 1 MRLVMDTKQKMGLSPGLRQSVEVLQMDSQELDQYVHRLSEENPLIEVQYXXXXXXXXXXX 60 M+LVM T+ LRQ++ +LQ +Q+L Y+H ENPLIE+ Sbjct: 11 MKLVMTTE--------LRQAITILQFSAQDLTDYLHEQQLENPLIEISDPPMTEEARRRT 62 Query: 61 XTQHL------------------LQYAAGPRHSLQDQLRSQLALLPLTKSERPLAAYLIG 102 + L + P L+D L Q+ + ++ R + YL Sbjct: 63 AEVDMPEPGRMPSGKSGDSDVTALDFLREPEEGLRDHLLHQIRMSEAPEAIRHIMNYLAL 122 Query: 103 CLDDNGYFAEQVEVVAAGLGVGCQVIEAGLRRVQSLEPYGVGARNLQECLLLQLEHSGRL 162 LD+NGY +++V A LG + L +Q L+P GVGARNL ECLL+QL Sbjct: 123 SLDENGYLEHEIDVYAGELGEEPGDVAKALGELQQLDPPGVGARNLTECLLIQLNGHEAR 182 Query: 163 TPLLRLLIEHHLEQLGGNQLVRVAKELNTSLKRVQEAYSTIKSLNPRPAYALDNGESTVY 222 PL ++ HL+QL Q ++AK L+ ++ V+ +K+LNP+P A+ + Y Sbjct: 183 DPLAEAIVRDHLDQLANKQFQKIAKALDVGVEDVEVVSDFLKTLNPKPG-AVFHSTPAEY 241 Query: 223 IVPDVYVMQKNGAHEAAVHPLSCPQITLAESYQRLLSLSGDEETRRYLQEKHEQASWIMR 282 I PDV+V++ + P++T+ Y++LL SG E Y+++K EQ WI R Sbjct: 242 ITPDVHVIKTGNELVVKLADGHLPRMTMNREYEQLLQ-SGGSEVASYMKQKQEQFHWIKR 300 Query: 283 CLEERKKTLCRVAGAILKLQRPFFERGQDYLVPLTLGRIAEELELHESTVSRAVRGKYMQ 342 +++R++T+ V AI++ Q FF RG DYL PL L IAEE+E+HESTVSRA KY Q Sbjct: 301 SIQQRQETILNVTKAIVRHQEDFFLRGADYLKPLNLKTIAEEIEVHESTVSRATVKKYAQ 360 Query: 343 CVWGTFELKYFFPSGITGEDSDWTPDALKRVIRELIEGEDKQAAYSDRRIAELLLEQGAV 402 G FELKYFF SG TGE D + D +K ++ LI+ E+K+ YSD++IA+LL +G Sbjct: 361 TPKGLFELKYFFRSGFTGEGDD-SADKVKLYLKRLIDEEEKKKPYSDQKIADLLEVKGIQ 419 Query: 403 ISRRTVAKYRESMRIASAPGRREY 426 +SRRTVAKYRE + I S+ R+ Y Sbjct: 420 VSRRTVAKYREELSIPSSSKRKRY 443 >Q67SW9.1 Q67SW9_SYMTH RNA polymerase sigma-54 factor Length = 452 Score = 276 bits (705), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 172/447 (38%), Positives = 253/447 (56%), Gaps = 24/447 (5%) Query: 3 LVMDTKQKMGLSPGLRQSVEVLQMDSQELDQYVHRLSEENPLIEVQYXXXXXXXXXXXXT 62 L M Q++ ++P LRQ++ VLQ EL + + ENP +EV+ Sbjct: 7 LRMQQTQRLVMTPELRQAITVLQKPVAELSELIAGELLENPCLEVEPREPSEDGAPSEVG 66 Query: 63 QHLLQYAAGPRH----------------------SLQDQLRSQLALLPLTKSERPLAAYL 100 + L G H +L + L SQL LL L +++ +A +L Sbjct: 67 RLLDFLNRGGSHGAGAPPEREEDTSFEPFTPRMPTLAEHLHSQLGLLRLDRAQERIARFL 126 Query: 101 IGCLDDNGYFAEQVEVVAAGLGVGCQVIEAGLRRVQSLEPYGVGARNLQECLLLQLEHSG 160 IGC+DD+GY A + AA LG + +EA L+ +QSL+P GVGAR+LQECLL+Q Sbjct: 127 IGCIDDHGYLAVSLGEAAAQLGATEEQVEAALKVIQSLDPPGVGARSLQECLLIQWATLD 186 Query: 161 RLTPLLRLLIEHHLEQLGGNQLVRVAKELNTSLKRVQEAYSTIKSLNPRPAYALDNGEST 220 PL+ LI HHL+ L ++ R+A+ L VQ A I++L+P+P G+ Sbjct: 187 DPNPLVPELIRHHLQDLAAGRIPRIAERLGVDCAAVQAAADAIRNLDPKPGRRFGGGDEA 246 Query: 221 VYIVPDVYVMQKNGAHEAAVHPLSCPQITLAESYQRLLSLSGDEETRRYLQEKHEQASWI 280 Y+VPDV++ + + V+ P+++++ Y+RLL + D TRRY++E+ + A W+ Sbjct: 247 RYVVPDVFIERVGQEYVVMVNEAPLPRLSVSTHYRRLLD-AADGHTRRYVEERIQSALWL 305 Query: 281 MRCLEERKKTLCRVAGAILKLQRPFFERGQDYLVPLTLGRIAEELELHESTVSRAVRGKY 340 +R +E+R+ TL RV AI++ QR FF+RG +L PLTL +A+ + +HESTVSRA GK+ Sbjct: 306 IRSIEQRRLTLLRVTEAIVRFQREFFDRGPRHLRPLTLREVAQAVGVHESTVSRATSGKW 365 Query: 341 MQCVWGTFELKYFFPSGI-TGEDSDWTPDALKRVIRELIEGEDKQAAYSDRRIAELLLEQ 399 Q G FELKYFF SG+ TG +A+KR+I +LI ED SD+ +AE L Q Sbjct: 366 AQTPQGMFELKYFFSSGVETGHGEGVAAEAVKRMIADLIRQEDPARPLSDQALAEALAAQ 425 Query: 400 GAVISRRTVAKYRESMRIASAPGRREY 426 G I+RRTVAKYRE M + ++ RR Y Sbjct: 426 GLRIARRTVAKYREEMGLPNSGQRRRY 452 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,340,335,001 Number of extensions: 92227407 Number of successful extensions: 260105 Number of sequences better than 1.0e-05: 1070 Number of HSP's gapped: 256160 Number of HSP's successfully gapped: 1070 Length of query: 428 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 289 Effective length of database: 1,751,175,118 Effective search space: 506089609102 Effective search space used: 506089609102 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)