BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0554.0003.p (333 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3HW95.1 C3HW95_BACTU Outer surface protein 289 2e-76 C2RIY3.1 C2RIY3_BACCE Outer surface protein 288 7e-76 C3FG42.1 C3FG42_BACTB Outer surface protein 288 7e-76 C3CXH6.1 C3CXH6_BACTU Outer surface protein 288 7e-76 C3CEP3.1 C3CEP3_BACTU Outer surface protein 288 7e-76 >C3HW95.1 C3HW95_BACTU Outer surface protein Length = 357 Score = 289 bits (740), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/318 (46%), Positives = 197/318 (61%), Gaps = 9/318 (2%) Query: 2 EYLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFSL 61 E+L+ + NGF SIFTSL I +G+ A H M M+DVSP++ H L Sbjct: 18 EWLKVAKENGFTSIFTSLHIPEDDPNTYKELIQILGKQALAHEMELMIDVSPKSLHHLGL 77 Query: 62 -----QQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFAS 116 ++L D G+ GLR+D G+ EIA ++H+ +VALNASTI + F L + + Sbjct: 78 TYENVEELLDWGIAGLRMDYGIAPKEIASVSHKMKVALNASTIIKPFWKELLAEHIRVEN 137 Query: 117 LEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRH 176 +EAWHN+YPRPETGL + Q QN++LQ G+ AFIPGD + RGPLHEGLP+LEKHRH Sbjct: 138 VEAWHNFYPRPETGLAKSFLQKQNQYLQECGIKTMAFIPGDAEKRGPLHEGLPTLEKHRH 197 Query: 177 LSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNEGAVLLG----VEKQRPSHVWE 232 + P YLELVQ+C VD VLIGD+S S +MQ+ + + G + L + + V E Sbjct: 198 MRPLEAYLELVQDCGVDKVLIGDISASLESMQEVASASRGIIPLRYKSFITDKEVLKVVE 257 Query: 233 AVHHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQP 292 VH NR D ARDVIRS E+R R + P HT+ R G++TIDN+ Y RY GE Q+ Sbjct: 258 QVHTNRLDPARDVIRSVESRERNRVVLQPMHTIVRKKGSITIDNELYGRYAGEIQVATHD 317 Query: 293 LPADERVNVIGYVAQRDI 310 LP DE+VNV+G V + D+ Sbjct: 318 LPVDEKVNVVGMVMEEDV 335 >C2RIY3.1 C2RIY3_BACCE Outer surface protein Length = 357 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 148/318 (46%), Positives = 199/318 (62%), Gaps = 9/318 (2%) Query: 2 EYLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFSL 61 E+L+ + NGF SIFTSL I +G+ A H M MVDVSP++ H L Sbjct: 18 EWLKVAKENGFTSIFTSLHIPEDDPNTYKELIQILGKQALAHEMELMVDVSPKSLHHLGL 77 Query: 62 -----QQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFAS 116 ++L D G+TGLR+D G+ EIA ++H+ +VALNASTI + F L + + Sbjct: 78 TYENVEELLDWGITGLRMDYGIAPKEIASVSHKMKVALNASTITKPFWKELLAEHIRVEN 137 Query: 117 LEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRH 176 +EAWHN+YPRPETGL + Q QN++LQ G+ + AFIPGD + RGPL+EGLP+LEKHR+ Sbjct: 138 VEAWHNFYPRPETGLAKSFLQKQNQYLQECGIKMMAFIPGDAEKRGPLYEGLPTLEKHRN 197 Query: 177 LSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNEGAVLLG----VEKQRPSHVWE 232 + P YLELVQ+C VD VLIGD+S S +MQ+ + + G + L + + V E Sbjct: 198 MRPLEAYLELVQDCGVDKVLIGDISASLESMQEVASASRGIIPLRYKSFITDKEVLKVVE 257 Query: 233 AVHHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQP 292 VH NR D ARDVIRS E+R R + P HT+ R G++TIDN+ Y RY GE Q+ Sbjct: 258 QVHTNRLDPARDVIRSVESREGNRVVLQPMHTIVRKKGSITIDNELYGRYAGEMQVATHD 317 Query: 293 LPADERVNVIGYVAQRDI 310 LP DE+VNV+G V + D+ Sbjct: 318 LPVDEKVNVVGIVVEEDV 335 >C3FG42.1 C3FG42_BACTB Outer surface protein Length = 357 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 148/318 (46%), Positives = 198/318 (62%), Gaps = 9/318 (2%) Query: 2 EYLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFSL 61 E+L+ + NGF SIFTSL I +G+ A H M MVDVSP++ H L Sbjct: 18 EWLKVAKENGFTSIFTSLHIPEDDPNTYKELIQILGKQALAHEMELMVDVSPKSLHHLGL 77 Query: 62 -----QQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFAS 116 ++L D G+TGLR+D G+ EIA ++H+ +VALNASTI + F L + + Sbjct: 78 TYENVEELLDWGITGLRMDYGIAPKEIASVSHKMKVALNASTITKPFWKELFAEHIRVEN 137 Query: 117 LEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRH 176 +EAWHN+YPRPETGL + Q QN++LQ G+ AFIPGD + RGPL+EGLP+LEKHR+ Sbjct: 138 VEAWHNFYPRPETGLAKSFLQKQNQYLQKCGIKTMAFIPGDAEKRGPLYEGLPTLEKHRN 197 Query: 177 LSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNEGAVLLG----VEKQRPSHVWE 232 + P YLELVQ+C VD VLIGD+S S +MQ+ + + G + L + + V E Sbjct: 198 MRPLEAYLELVQDCGVDKVLIGDISASLESMQEVASASRGIIPLRYKSFITDKEVLKVVE 257 Query: 233 AVHHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQP 292 VH NR D ARDVIRS E+R R + P HT+ R G++TIDN+ Y RY GE Q+ Sbjct: 258 QVHTNRLDPARDVIRSVESRERNRVVLQPMHTIVRKKGSITIDNELYGRYAGEMQVATHD 317 Query: 293 LPADERVNVIGYVAQRDI 310 LP DE+VNV+G V + D+ Sbjct: 318 LPVDEKVNVVGMVVEEDV 335 >C3CXH6.1 C3CXH6_BACTU Outer surface protein Length = 357 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 148/318 (46%), Positives = 198/318 (62%), Gaps = 9/318 (2%) Query: 2 EYLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFSL 61 E+L+ + NGF SIFTSL I +G+ A H M MVDVSP++ H L Sbjct: 18 EWLKVAKENGFTSIFTSLHIPEDDPNTYKELIQILGKQALAHEMELMVDVSPKSLHHLGL 77 Query: 62 -----QQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFAS 116 ++L D G+TGLR+D G+ EIA ++H+ +VALNASTI + F L + + Sbjct: 78 TYENVEELLDWGITGLRMDYGIAPKEIASVSHKMKVALNASTITKPFWKELFAEHIRVEN 137 Query: 117 LEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRH 176 +EAWHN+YPRPETGL + Q QN++LQ G+ AFIPGD + RGPL+EGLP+LEKHR+ Sbjct: 138 VEAWHNFYPRPETGLAKSFLQKQNQYLQKCGIKTMAFIPGDAEKRGPLYEGLPTLEKHRN 197 Query: 177 LSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNEGAVLLG----VEKQRPSHVWE 232 + P YLELVQ+C VD VLIGD+S S +MQ+ + + G + L + + V E Sbjct: 198 MRPLEAYLELVQDCGVDKVLIGDISASLESMQEVASASRGIIPLRYKSFITDKEVLKVVE 257 Query: 233 AVHHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQP 292 VH NR D ARDVIRS E+R R + P HT+ R G++TIDN+ Y RY GE Q+ Sbjct: 258 QVHTNRLDPARDVIRSVESRERNRVVLQPMHTIVRKKGSITIDNELYGRYAGEMQVATHD 317 Query: 293 LPADERVNVIGYVAQRDI 310 LP DE+VNV+G V + D+ Sbjct: 318 LPVDEKVNVVGMVVEEDV 335 >C3CEP3.1 C3CEP3_BACTU Outer surface protein Length = 357 Score = 288 bits (736), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 148/318 (46%), Positives = 198/318 (62%), Gaps = 9/318 (2%) Query: 2 EYLRYMQLNGFNSIFTSLQIXXXXXXXXXXXXTSIGQFARKHNMLFMVDVSPRTFEHFSL 61 E+L+ + NGF SIFTSL I +G+ A H M MVDVSP++ H L Sbjct: 18 EWLKVAKENGFTSIFTSLHIPEDDPNTYKELIQILGKQALAHEMELMVDVSPKSLHHLGL 77 Query: 62 -----QQLKDSGVTGLRIDNGMEIAEIAGLTHEWRVALNASTIDQAFLDGLRGQQANFAS 116 ++L D G+TGLR+D G+ EIA ++H+ +VALNASTI + F L + + Sbjct: 78 TYENVEELLDWGITGLRMDYGIAPKEIASVSHKMKVALNASTITKPFWKELFAEHIRVEN 137 Query: 117 LEAWHNYYPRPETGLELTIFQNQNRWLQSQGLTVAAFIPGDGDLRGPLHEGLPSLEKHRH 176 +EAWHN+YPRPETGL + Q QN++LQ G+ AFIPGD + RGPL+EGLP+LEKHR+ Sbjct: 138 VEAWHNFYPRPETGLAKSFLQKQNQYLQKCGIKTMAFIPGDAEKRGPLYEGLPTLEKHRN 197 Query: 177 LSPFAGYLELVQECFVDHVLIGDLSVSSWTMQQFLAWNEGAVLLG----VEKQRPSHVWE 232 + P YLELVQ+C VD VLIGD+S S +MQ+ + + G + L + + V E Sbjct: 198 MRPLEAYLELVQDCGVDKVLIGDISASLESMQEVASASRGIIPLRYKSFITDKEVLKVVE 257 Query: 233 AVHHNRPDIARDVIRSEEARHHFRGSILPEHTVERPAGALTIDNDKYLRYRGEFQIVLQP 292 VH NR D ARDVIRS E+R R + P HT+ R G++TIDN+ Y RY GE Q+ Sbjct: 258 QVHTNRLDPARDVIRSVESRERNRVVLQPMHTIVRKKGSITIDNELYGRYAGEMQVATHD 317 Query: 293 LPADERVNVIGYVAQRDI 310 LP DE+VNV+G V + D+ Sbjct: 318 LPVDEKVNVVGMVVEEDV 335 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.138 0.423 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,905,129,597 Number of extensions: 79133480 Number of successful extensions: 149319 Number of sequences better than 1.0e-05: 466 Number of HSP's gapped: 148062 Number of HSP's successfully gapped: 466 Length of query: 333 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 197 Effective length of database: 1,779,438,163 Effective search space: 350549318111 Effective search space used: 350549318111 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)