BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0553.0011.p (420 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7R2.1 B3K7R2_9BACI DEAD/DEAH box helicase domain protein 538 e-151 A4J0I4.1 A4J0I4_DESRM DEAD/DEAH box helicase domain protein 471 e-131 B1DFI2.1 B1DFI2_9BACL DEAD/DEAH box helicase domain protein 463 e-128 C2W877.1 C2W877_BACCE ATP-dependent RNA helicase 459 e-127 A8MJ90.1 A8MJ90_ALKOO DEAD/DEAH box helicase domain protein 459 e-127 >B3K7R2.1 B3K7R2_9BACI DEAD/DEAH box helicase domain protein Length = 538 Score = 538 bits (1387), Expect = e-151, Method: Compositional matrix adjust. Identities = 267/364 (73%), Positives = 310/364 (85%), Gaps = 2/364 (0%) Query: 1 VETLPGFKELGVSELLNGLLQGQGIAKPTPVQEEAIPPLVQGLDVIARAKTGTGKTLAFL 60 VE LP F++LG+ E L+ QGI +PTPVQ+E+IP L+QG DVIARAKTGTGKTLAF+ Sbjct: 8 VERLPNFQQLGIDEQRVRKLKEQGITEPTPVQQESIPLLLQGKDVIARAKTGTGKTLAFM 67 Query: 61 LPIMDKIRVEQAYPQALIMAPTRELALQITEEARKL--ARHTGVKILAVYGGQDVEKQLR 118 LPI+ I ++AYPQALI+APTRELALQITEEA+KL G+KILAVYGGQDVEKQLR Sbjct: 68 LPILQHIDPKRAYPQALIVAPTRELALQITEEAKKLTAGEPDGIKILAVYGGQDVEKQLR 127 Query: 119 KLEGGRHLIIGTPGRLLDHIRRGTLDLGGVKMLVLDEADQMLHMGFLEDVETIITAVPYR 178 KLEGGR LIIGTPGRLLDH+RRGTL+LGGVK LVLDEADQMLHMGFL++VE +I A+PYR Sbjct: 128 KLEGGRQLIIGTPGRLLDHLRRGTLELGGVKQLVLDEADQMLHMGFLDEVEALIHALPYR 187 Query: 179 RQTMLFSATMPDPIKRLASKYMKEPLDIVIKSGSPIPLENIRQQVVECSDRNKEEALIAL 238 RQTMLFSATMP +K+LA YM +P+DIVIK SPIPLE I+Q VVEC+DR+K++AL A+ Sbjct: 188 RQTMLFSATMPAGVKQLAGNYMNQPVDIVIKGASPIPLEQIQQVVVECTDRSKQDALRAM 247 Query: 239 IERDRPYLAMIFCRTKRRVSKLNEALQAAGYDCDELHGDLSQSKREAVMKRFREAKLQLL 298 IE P+LA+IFCRTKRR + LNEAL A GY DELHGDLSQ+KREAVMKRFREAKLQLL Sbjct: 248 IEEHNPFLAIIFCRTKRRATTLNEALLAHGYQSDELHGDLSQAKREAVMKRFREAKLQLL 307 Query: 299 VATDVAARGLDVEGITHVFNYDLPLDADSYIHRIGRTGRAGGKGLAITFASPRERAGLEL 358 VATDVAARGLDVEG+THVFNYD+P D +SYIHRIGRTGRAGG G+AITFA+ ++ L+ Sbjct: 308 VATDVAARGLDVEGVTHVFNYDMPHDVESYIHRIGRTGRAGGSGMAITFAAGKDLNDLQR 367 Query: 359 IEHG 362 IE G Sbjct: 368 IEEG 371 >A4J0I4.1 A4J0I4_DESRM DEAD/DEAH box helicase domain protein Length = 460 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 228/356 (64%), Positives = 282/356 (79%), Gaps = 1/356 (0%) Query: 7 FKELGVSELLNGLLQGQGIAKPTPVQEEAIPPLVQGLDVIARAKTGTGKTLAFLLPIMDK 66 F +LG+ LN LL+ GI +PTP+Q++ IP L+ G DVIA+A+TGTGKTLAF+LPI++K Sbjct: 4 FLQLGIRRELNELLRVYGITEPTPIQKQTIPILLSGKDVIAQAQTGTGKTLAFVLPILEK 63 Query: 67 IRVEQAYPQALIMAPTRELALQITEEARKLARHTGVKILAVYGGQDVEKQLRKLEGGRHL 126 I +++Y QALI+ PTRELALQIT E +KLA +LAVYGGQDVE+Q ++L+G H+ Sbjct: 64 IDAKKSYIQALILTPTRELALQITTEVKKLASKMDANVLAVYGGQDVERQNKRLQGNTHI 123 Query: 127 IIGTPGRLLDHIRRGTLDLGGVKMLVLDEADQMLHMGFLEDVETIITAVPYRRQTMLFSA 186 +I TPGRLLDH+ RGT+ L GV MLVLDEADQMLHMGFL +VE II +RQTMLFSA Sbjct: 124 VIATPGRLLDHLGRGTIRLTGVSMLVLDEADQMLHMGFLNEVEKIIHQTSAKRQTMLFSA 183 Query: 187 TMPDPIKRLASKYMKEPLDIVIKSGSPIPLENIRQQVVECSDRNKEEALIALIERDRPYL 246 TMP I+ L+ KYM++P+DI ++ G+ I LE +Q VE +DR K+E L L++ +PYL Sbjct: 184 TMPAEIRALSVKYMRKPMDIHVR-GTGITLEKTKQIAVETTDRTKQETLRKLLDEYQPYL 242 Query: 247 AMIFCRTKRRVSKLNEALQAAGYDCDELHGDLSQSKREAVMKRFREAKLQLLVATDVAAR 306 +IFCRTKRR S LNE L A GY+ DELHGDLSQ+KRE VMKRFREAKLQ+LVATDVAAR Sbjct: 243 GIIFCRTKRRASALNEMLLAHGYNSDELHGDLSQAKREQVMKRFREAKLQILVATDVAAR 302 Query: 307 GLDVEGITHVFNYDLPLDADSYIHRIGRTGRAGGKGLAITFASPRERAGLELIEHG 362 GLDVEG+THVFNYD+P D +SYIHRIGRTGRAG GLA+TF SPR+R L++IE G Sbjct: 303 GLDVEGVTHVFNYDIPQDVESYIHRIGRTGRAGDTGLAVTFVSPRDRTDLQMIEKG 358 >B1DFI2.1 B1DFI2_9BACL DEAD/DEAH box helicase domain protein Length = 578 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 221/354 (62%), Positives = 281/354 (79%), Gaps = 1/354 (0%) Query: 7 FKELGVSELLNGLLQGQGIAKPTPVQEEAIPPLVQGLDVIARAKTGTGKTLAFLLPIMDK 66 F +G+ L +LQ GI PTPVQ++AIP L+ G DVIA+A+TGTGKT+AF LPI+ + Sbjct: 5 FISMGIIPELTDVLQSNGITSPTPVQKKAIPVLLSGQDVIAQAQTGTGKTIAFTLPILQR 64 Query: 67 IRVEQAYPQALIMAPTRELALQITEEARKLARHTGVKILAVYGGQDVEKQLRKLEGGRHL 126 I +++ QALI+ PTRELA+QIT E +KLA G K+LA YGGQDV+ Q+RKL H+ Sbjct: 65 IDIDKEQVQALILTPTRELAIQITSELKKLAAAVGAKVLAAYGGQDVDAQIRKLNNSPHI 124 Query: 127 IIGTPGRLLDHIRRGTLDLGGVKMLVLDEADQMLHMGFLEDVETIITAVPYRRQTMLFSA 186 ++ TPGRL+DH+RR T++LG +KMLVLDEADQMLHMGFL +V+ I+ P RQTMLFSA Sbjct: 125 VVATPGRLIDHMRRETINLGKLKMLVLDEADQMLHMGFLPEVQNIVDQTPRARQTMLFSA 184 Query: 187 TMPDPIKRLASKYMKEPLDIVIKSGSPIPLENIRQQVVECSDRNKEEALIALIERDRPYL 246 TMPD IKRLA YMK P+DI I+S + + L+NI+Q V+E +DR +++ALI++IE RPYL Sbjct: 185 TMPDQIKRLAENYMKTPVDIKIQSAN-VTLDNIKQLVIETTDRGRQKALISMIETQRPYL 243 Query: 247 AMIFCRTKRRVSKLNEALQAAGYDCDELHGDLSQSKREAVMKRFREAKLQLLVATDVAAR 306 A+IFCRTK R KLN+ LQ G++ DELHGDL+Q+KRE VMKRFR+AKLQ+LVATDVAAR Sbjct: 244 AVIFCRTKVRAKKLNKDLQDLGFESDELHGDLTQAKREQVMKRFRDAKLQILVATDVAAR 303 Query: 307 GLDVEGITHVFNYDLPLDADSYIHRIGRTGRAGGKGLAITFASPRERAGLELIE 360 GLDVEG+THVFN+D+P D++ YIHRIGRTGRAG +G AIT ASP +RA + IE Sbjct: 304 GLDVEGVTHVFNFDVPTDSEIYIHRIGRTGRAGQRGTAITIASPYDRAAVAHIE 357 >C2W877.1 C2W877_BACCE ATP-dependent RNA helicase Length = 433 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 223/360 (61%), Positives = 282/360 (78%), Gaps = 2/360 (0%) Query: 4 LPGFKELGVSELLNGLLQGQGIAKPTPVQEEAIPPLVQGLDVIARAKTGTGKTLAFLLPI 63 + F ELG+SE N L+ GIA+ TP+QE+AIP ++ G D+I +AKTGTGKTLAF+LPI Sbjct: 1 MKNFLELGISETFNHTLRENGIAEATPIQEQAIPVVMAGKDIIGQAKTGTGKTLAFVLPI 60 Query: 64 MDKIRVEQAYPQALIMAPTRELALQITEEARKLARHT-GVKILAVYGGQDVEKQLRKLEG 122 ++KI E + QALI+APTRELALQIT E K+ H + +LA+YGGQDV +Q+RKL+G Sbjct: 61 LEKIDPESSDVQALIVAPTRELALQITTEIEKMLVHKEDINVLAIYGGQDVAQQMRKLKG 120 Query: 123 GRHLIIGTPGRLLDHIRRGTLDLGGVKMLVLDEADQMLHMGFLEDVETIITAVPYRRQTM 182 H+++ TPGRLLDH+RR T+ L V MLVLDEADQMLH GFL D+E I+ P +QTM Sbjct: 121 NTHIVVATPGRLLDHLRRETIVLSNVSMLVLDEADQMLHFGFLYDIEDILEETPESKQTM 180 Query: 183 LFSATMPDPIKRLASKYMKEPLDIVIKSGSPIPLENIRQQVVECSDRNKEEALIALIERD 242 LFSATMP IK+LA +YMKEP I I+S + + NI+Q+V+E +DR K++AL +++RD Sbjct: 181 LFSATMPKDIKKLAKRYMKEPEMIRIQS-EEVTVNNIKQRVIETTDRAKQDALRHVMDRD 239 Query: 243 RPYLAMIFCRTKRRVSKLNEALQAAGYDCDELHGDLSQSKREAVMKRFREAKLQLLVATD 302 +P+LA+IFCRTKRR SKL + L+ GY+CDELHGDLSQ KRE VMK FREAK+Q L+ATD Sbjct: 240 QPFLAVIFCRTKRRASKLYDDLKGYGYNCDELHGDLSQGKRERVMKSFREAKIQYLIATD 299 Query: 303 VAARGLDVEGITHVFNYDLPLDADSYIHRIGRTGRAGGKGLAITFASPRERAGLELIEHG 362 VAARGLDVEG+THVFNYD+P D +SYIHRIGRTGRAGG GLAITF +P++ L+ IE G Sbjct: 300 VAARGLDVEGVTHVFNYDIPEDVESYIHRIGRTGRAGGSGLAITFVAPKDEMHLKEIEKG 359 >A8MJ90.1 A8MJ90_ALKOO DEAD/DEAH box helicase domain protein Length = 461 Score = 459 bits (1180), Expect = e-127, Method: Compositional matrix adjust. Identities = 220/356 (61%), Positives = 282/356 (79%), Gaps = 1/356 (0%) Query: 7 FKELGVSELLNGLLQGQGIAKPTPVQEEAIPPLVQGLDVIARAKTGTGKTLAFLLPIMDK 66 F LG+ E + L+ +GI +PTP+Q E+IP +QG D+IA+A+TGTGKT AF+LPI+ K Sbjct: 5 FLNLGIIEEIVEPLRAEGIVEPTPIQRESIPVALQGKDIIAQAQTGTGKTFAFMLPILQK 64 Query: 67 IRVEQAYPQALIMAPTRELALQITEEARKLARHTGVKILAVYGGQDVEKQLRKLEGGRHL 126 I Q QALI+APTRELALQIT EA+K+A+ V +LAVYGGQDVEKQ+ KL+GG H+ Sbjct: 65 INKNQKDVQALILAPTRELALQITTEAKKIAKGLDVNVLAVYGGQDVEKQIHKLKGGMHV 124 Query: 127 IIGTPGRLLDHIRRGTLDLGGVKMLVLDEADQMLHMGFLEDVETIITAVPYRRQTMLFSA 186 +I TPGRLLDH+RRGT+ L V LVLDEADQML MGFLE+VE II P RQ ML+SA Sbjct: 125 VIATPGRLLDHLRRGTMHLKAVNQLVLDEADQMLTMGFLEEVEYIIKKTPQNRQLMLYSA 184 Query: 187 TMPDPIKRLASKYMKEPLDIVIKSGSPIPLENIRQQVVECSDRNKEEALIALIERDRPYL 246 T+P I+ L ++YMK P++I I S + + L+ I+Q VVE +DR+K+EAL+ +I+++ P+L Sbjct: 185 TIPKGIRALTNRYMKNPVEIRIHS-NKVTLDEIKQLVVETTDRHKQEALMHMIKQENPFL 243 Query: 247 AMIFCRTKRRVSKLNEALQAAGYDCDELHGDLSQSKREAVMKRFREAKLQLLVATDVAAR 306 A++FCRTKRRV L++AL G+ CDELHGD++Q+KRE VMK FR AKLQ+LVATDVAAR Sbjct: 244 AIVFCRTKRRVKTLSDALIEKGFSCDELHGDMTQAKREKVMKEFRNAKLQILVATDVAAR 303 Query: 307 GLDVEGITHVFNYDLPLDADSYIHRIGRTGRAGGKGLAITFASPRERAGLELIEHG 362 G+DVEGITHVFNYD+P D + YIHRIGRTGRAG KG+AITFA+P++R L +IE G Sbjct: 304 GIDVEGITHVFNYDIPQDVEGYIHRIGRTGRAGDKGMAITFAAPKDRDSLAMIERG 359 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,353,664,364 Number of extensions: 96487232 Number of successful extensions: 341751 Number of sequences better than 1.0e-05: 11882 Number of HSP's gapped: 317294 Number of HSP's successfully gapped: 12518 Length of query: 420 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 282 Effective length of database: 1,760,596,133 Effective search space: 496488109506 Effective search space used: 496488109506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)