BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0553.0008.p (528 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7T3.1 B3K7T3_9BACI FAD dependent oxidoreductase 602 e-170 A9VRM1.1 A9VRM1_BACWK FAD dependent oxidoreductase 522 e-146 C2W3H2.1 C2W3H2_BACCE Oxidoreductase, with Rieske iron-sulfur pr... 521 e-146 C2ZJ62.1 C2ZJ62_BACCE Oxidoreductase, with Rieske iron-sulfur pr... 520 e-145 C2Z2I4.1 C2Z2I4_BACCE Oxidoreductase, with Rieske iron-sulfur pr... 520 e-145 >B3K7T3.1 B3K7T3_9BACI FAD dependent oxidoreductase Length = 517 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 286/498 (57%), Positives = 368/498 (73%), Gaps = 3/498 (0%) Query: 29 WRASTEVPSFPALAEDHSTDXXXXXXXXXXXXXXYLLTQAGYKVTLLEAGELFAGTTGFT 88 W A+T++P+FP LAED TD YLL +AG V L+EAG++ GTTG T Sbjct: 19 WVATTDLPAFPRLAEDIETDVAVVGAGITGITTAYLLAKAGKDVVLIEAGQILNGTTGHT 78 Query: 89 TAKITVQHGLIYHDLVKDFGEEAARLYYQSNNEALKWMVQTAEELKLSCGLTREAAYLYA 148 TAK+T QHGLIYH+ + FG+E RLYY+ N EA++++ + GL E AY+YA Sbjct: 79 TAKVTAQHGLIYHEFLNHFGDEKTRLYYEGNREAIEFIRDIVGGDEEKFGLKLEDAYIYA 138 Query: 149 DEGDEQTLKQLEDEFKAYGKIGLPGEWQDHISLPLRIDGAIKLPEQARFHPLQYLKGLLD 208 + +++ L +LEDE KAY K+G+PGEWQ+ + LP+ + GAIK+P Q +FHPLQYLK L + Sbjct: 139 -QTEDKYLSKLEDEIKAYEKLGIPGEWQESLPLPMPVRGAIKMPGQYQFHPLQYLKHLTE 197 Query: 209 VILDKGGIIYEHTMIGEQVDKDSGVLTLYTEQSKHKISCRHAVSASHYPFYDGGALYFTR 268 L GG IYE+T + E+V+ D G +TL T++ H+I+C HAVSASH+PFYDG L+FTR Sbjct: 198 QFLKLGGRIYENTTMDEKVETD-GPITLLTKRGGHRITCNHAVSASHFPFYDGKGLFFTR 256 Query: 269 LHAERSYCLAIDPETDYEGGMYLSAGNPTRSLRAVEWNGKKLVIVGGDNHKTGQGICTHG 328 LH ERSY +A+ PET Y GGM+LS PTRSLR+ +NG++LVIVGG+NH TG+ ICTH Sbjct: 257 LHVERSYAVAVKPETAYPGGMFLSVDQPTRSLRSATYNGEELVIVGGENHPTGRSICTHQ 316 Query: 329 HYENLEKFAGGLLGIRGIPFRWSTQDLITLDRVPYIAK-TAEDEEIYIATGFRKWGMTNG 387 HYENLE FAG LLG IP+RWSTQDLITLD +PYI T+ + I++ATGFRKWGMT G Sbjct: 317 HYENLELFAGNLLGASAIPYRWSTQDLITLDNMPYIGPITSNQDRIFVATGFRKWGMTTG 376 Query: 388 TLAARIIADGILRRSNPYTELYDPSRFKTVPAIKTFIAQNANVAKELVAGKLEIVHKRTH 447 TLAA+II D IL + N Y ++++PSRFK P+IKTF+AQNA VAK+ VAGK E+ H Sbjct: 377 TLAAKIICDQILEKDNRYADVFNPSRFKADPSIKTFVAQNAMVAKDFVAGKFEMAHADIT 436 Query: 448 ELEPDQGAVVFHDGKRVGAYRDPEGKLHLVDRTCTHMGCETEWNDGERSWDCPCHGSRFS 507 EL+P +GAVV H+G+R GAY+D +G L+LVD TCTH+GCE EWN+GERSWDCPCHGSRF Sbjct: 437 ELKPGEGAVVRHNGQRAGAYKDDQGNLYLVDTTCTHLGCEVEWNEGERSWDCPCHGSRFR 496 Query: 508 FDGDVLEGPASVPLTRLE 525 +G+VLEGPA PL +L+ Sbjct: 497 HNGEVLEGPAIEPLKQLD 514 >A9VRM1.1 A9VRM1_BACWK FAD dependent oxidoreductase Length = 508 Score = 522 bits (1344), Expect = e-146, Method: Compositional matrix adjust. Identities = 243/498 (48%), Positives = 338/498 (67%), Gaps = 6/498 (1%) Query: 29 WRASTEVPSFPALAEDHSTDXXXXXXXXXXXXXXYLLTQAGYKVTLLEAGELFAGTTGFT 88 W ST+ P+FP L+E+ T+ YLL + G KV L+++G + GTTG T Sbjct: 14 WIESTQFPTFPHLSENIKTEVAVIGAGITGITTAYLLAKEGMKVVLIDSGSVLNGTTGHT 73 Query: 89 TAKITVQHGLIYHDLVKDFGEEAARLYYQSNNEALKWMVQTAEELKLSCGLTREAAYLYA 148 TAK+T QH LIY +L+ +FG E ARLYY+SNN+AL+++ +T + K+ C T E +YLY Sbjct: 74 TAKVTAQHDLIYDELINNFGVEKARLYYESNNKALQFINETVQTYKIDCNFTNEDSYLYT 133 Query: 149 DEGDEQTLKQLEDEFKAYGKIGLPGEWQDHISLPLRIDGAIKLPEQARFHPLQYLKGLLD 208 + L+ L E++AY K+ +P ++ +S+P+ + A+ + QA+FHPL YLK LL+ Sbjct: 134 TTNN--GLRNLTKEYEAYQKLNIPCDYVQSLSIPIPVQSALVMKNQAQFHPLLYLKTLLE 191 Query: 209 VILDKGGIIYEHTMIGEQVDKDSGVLTLYTEQSKHKISCRHAVSASHYPFYDGGALYFTR 268 ++ GG +YE T +D + G + H+I+C++ VS SH+PFYD + +FTR Sbjct: 192 KFVEMGGKVYEQTT---AIDVEKGDYPQVITKGDHRITCKYIVSCSHFPFYDANSFFFTR 248 Query: 269 LHAERSYCLAIDPETDYEGGMYLSAGNPTRSLRAVEWNGKKLVIVGGDNHKTGQGICTHG 328 ++AERSY LAI +TDY GGMYLS +P RS+R NG+KL+++GG++HKTGQGI T Sbjct: 249 MYAERSYALAIKAKTDYPGGMYLSIDDPKRSIRYTTSNGEKLILIGGESHKTGQGINTML 308 Query: 329 HYENLEKFAGGLLGIRGIPFRWSTQDLITLDRVPYIAKTAE-DEEIYIATGFRKWGMTNG 387 HY+ L FA G+ IP+RWS QDLITLD++PYI E + I++ATG+RKWGMT G Sbjct: 309 HYDALYSFAESTFGVDEIPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTG 368 Query: 388 TLAARIIADGILRRSNPYTELYDPSRFKTVPAIKTFIAQNANVAKELVAGKLEIVHKRTH 447 T AA ++ D IL+ +PY EL+ PSRF P IKTF++QN +VAK L+ GK+E ++ Sbjct: 369 TAAAHLLKDSILKVHSPYKELFAPSRFHANPDIKTFLSQNIDVAKHLIEGKIETALRKPE 428 Query: 448 ELEPDQGAVVFHDGKRVGAYRDPEGKLHLVDRTCTHMGCETEWNDGERSWDCPCHGSRFS 507 LE +G+VV +GKR GAY+D EGKLH+VD TCTH+GCE EWN G+ +WDCPCHGSRFS Sbjct: 429 NLEVGEGSVVHVNGKRAGAYKDKEGKLHIVDTTCTHLGCEVEWNSGDCTWDCPCHGSRFS 488 Query: 508 FDGDVLEGPASVPLTRLE 525 DGDV+EGPA PL R++ Sbjct: 489 IDGDVMEGPADQPLKRVD 506 >C2W3H2.1 C2W3H2_BACCE Oxidoreductase, with Rieske iron-sulfur protein 2Fe-2S subunit Length = 508 Score = 521 bits (1341), Expect = e-146, Method: Compositional matrix adjust. Identities = 249/498 (50%), Positives = 334/498 (67%), Gaps = 6/498 (1%) Query: 29 WRASTEVPSFPALAEDHSTDXXXXXXXXXXXXXXYLLTQAGYKVTLLEAGELFAGTTGFT 88 WR ST +P FP LAE+ T+ YLL + G KV L+++G + GTTG T Sbjct: 14 WRDSTSLPIFPKLAENIRTEVAIIGAGITGITTAYLLAKEGMKVVLIDSGNILNGTTGHT 73 Query: 89 TAKITVQHGLIYHDLVKDFGEEAARLYYQSNNEALKWMVQTAEELKLSCGLTREAAYLYA 148 TAKIT QH LIY +L++ FGE+ ARLYY++N +AL++M +T + + C T E AYLY Sbjct: 74 TAKITAQHDLIYDELIQHFGEDQARLYYEANEKALQFMKETIQTNNIECDFTEEDAYLYT 133 Query: 149 DEGDEQTLKQLEDEFKAYGKIGLPGEWQDHISLPLRIDGAIKLPEQARFHPLQYLKGLLD 208 D L++L E++AY K+ +P ++ + LP+ + A+ + QA+FHPLQYLK L++ Sbjct: 134 TCND--GLRKLTKEYEAYKKLDIPCDYVKSLPLPISVQAALVMKNQAQFHPLQYLKHLIE 191 Query: 209 VILDKGGIIYEHTMIGEQVDKDSGVLTLYTEQSKHKISCRHAVSASHYPFYDGGALYFTR 268 ++ GG IYE T +D + + H+I+C + VS SH+PFYD + +F R Sbjct: 192 QFIEAGGTIYEQTT---AIDIEKNSYPQVITKDGHRITCGYVVSCSHFPFYDANSFFFAR 248 Query: 269 LHAERSYCLAIDPETDYEGGMYLSAGNPTRSLRAVEWNGKKLVIVGGDNHKTGQGICTHG 328 ++AERSY LAI + DY GGMYLS NPTRSLR NG+KL++VGG++HKTGQGI T Sbjct: 249 MYAERSYVLAIKAKKDYPGGMYLSIDNPTRSLRYTTMNGEKLILVGGESHKTGQGINTML 308 Query: 329 HYENLEKFAGGLLGIRGIPFRWSTQDLITLDRVPYIAKTAEDE-EIYIATGFRKWGMTNG 387 HYE L FA GI IP+RWS QDLITLD++PYI E+ I++ATG+RKWGMT G Sbjct: 309 HYEALHSFAEETFGIDEIPYRWSAQDLITLDKLPYIGHINENNPNIFVATGYRKWGMTTG 368 Query: 388 TLAARIIADGILRRSNPYTELYDPSRFKTVPAIKTFIAQNANVAKELVAGKLEIVHKRTH 447 T AA ++ D I + NPY EL+ PSRF P IKTF +QN +VAK L+ GKLE ++ Sbjct: 369 TAAAHLLKDSITKIDNPYKELFAPSRFHADPDIKTFFSQNLDVAKHLIEGKLEFALRKPE 428 Query: 448 ELEPDQGAVVFHDGKRVGAYRDPEGKLHLVDRTCTHMGCETEWNDGERSWDCPCHGSRFS 507 +LE +G+VV +GKR GAY+D +GKLH+VD TCTH+GCE EWN G+ +WDCPCHGSRFS Sbjct: 429 DLENGEGSVVRVNGKRAGAYKDEKGKLHIVDTTCTHLGCEVEWNSGDCTWDCPCHGSRFS 488 Query: 508 FDGDVLEGPASVPLTRLE 525 +GDV+EGPA PL R++ Sbjct: 489 IEGDVIEGPADKPLKRVD 506 >C2ZJ62.1 C2ZJ62_BACCE Oxidoreductase, with Rieske iron-sulfur protein 2Fe-2S subunit Length = 508 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 243/498 (48%), Positives = 338/498 (67%), Gaps = 6/498 (1%) Query: 29 WRASTEVPSFPALAEDHSTDXXXXXXXXXXXXXXYLLTQAGYKVTLLEAGELFAGTTGFT 88 W ST++P+FP L+ED T+ YLL + G KV L+++G + GTTG T Sbjct: 14 WIESTQLPTFPHLSEDIKTEVAVIGAGITGITTAYLLAKEGMKVVLIDSGSVLNGTTGHT 73 Query: 89 TAKITVQHGLIYHDLVKDFGEEAARLYYQSNNEALKWMVQTAEELKLSCGLTREAAYLYA 148 TAK+T QH LIY +L+ FG E A+LYY+SNN AL+++ T + K+ C T E +YLY Sbjct: 74 TAKVTAQHDLIYEELINHFGVEKAKLYYESNNHALQFISDTVQTYKIDCNFTNEDSYLYT 133 Query: 149 DEGDEQTLKQLEDEFKAYGKIGLPGEWQDHISLPLRIDGAIKLPEQARFHPLQYLKGLLD 208 + L+ L E++AY K+ +P E+ + +P+ + A+ + QA+FHPL YLK LL+ Sbjct: 134 TT--DNGLRNLTKEYEAYQKLNIPCEYVQSLPIPIPVQSALVMKNQAQFHPLLYLKTLLE 191 Query: 209 VILDKGGIIYEHTMIGEQVDKDSGVLTLYTEQSKHKISCRHAVSASHYPFYDGGALYFTR 268 ++ GG +YE T +D + G + H+I+C++ VS SH+PFYD + +FTR Sbjct: 192 KFVEMGGKVYEQTT---AIDVEKGDYPQVITKGDHRITCKYIVSCSHFPFYDANSFFFTR 248 Query: 269 LHAERSYCLAIDPETDYEGGMYLSAGNPTRSLRAVEWNGKKLVIVGGDNHKTGQGICTHG 328 ++AERSY LAI +TDY GGMYLS +P RSLR + NG+KL+++GG++HKTGQGI T Sbjct: 249 MYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYMTSNGEKLILIGGESHKTGQGINTML 308 Query: 329 HYENLEKFAGGLLGIRGIPFRWSTQDLITLDRVPYIAKTAE-DEEIYIATGFRKWGMTNG 387 HYE L FA G+ +P+RWS QDLITLD++PYI E + I++ATG+RKWGMT G Sbjct: 309 HYEALYSFAEATFGVDEVPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTG 368 Query: 388 TLAARIIADGILRRSNPYTELYDPSRFKTVPAIKTFIAQNANVAKELVAGKLEIVHKRTH 447 T AA ++ D IL+ +PY EL+ PSRF P IKTF++QN +VAK L+ GK+E ++ Sbjct: 369 TAAAHLLKDSILKIHSPYKELFAPSRFHANPDIKTFLSQNIDVAKHLIEGKIETALRKPE 428 Query: 448 ELEPDQGAVVFHDGKRVGAYRDPEGKLHLVDRTCTHMGCETEWNDGERSWDCPCHGSRFS 507 +LE +G+VV +GKR GAY+D EGKLH+VD TCTH+GCE EWN+G+ +WDCPCHGSRFS Sbjct: 429 DLEVGEGSVVHVNGKRAGAYKDTEGKLHIVDTTCTHLGCEVEWNNGDCTWDCPCHGSRFS 488 Query: 508 FDGDVLEGPASVPLTRLE 525 +GDV+EGPA PL R++ Sbjct: 489 IEGDVIEGPADQPLKRVD 506 >C2Z2I4.1 C2Z2I4_BACCE Oxidoreductase, with Rieske iron-sulfur protein 2Fe-2S subunit Length = 508 Score = 520 bits (1340), Expect = e-145, Method: Compositional matrix adjust. Identities = 243/498 (48%), Positives = 338/498 (67%), Gaps = 6/498 (1%) Query: 29 WRASTEVPSFPALAEDHSTDXXXXXXXXXXXXXXYLLTQAGYKVTLLEAGELFAGTTGFT 88 W ST++P+FP L+ED T+ YLL + G KV L+++G + GTTG T Sbjct: 14 WIESTQLPTFPHLSEDIKTEVAVIGAGITGITTAYLLAKEGMKVVLIDSGSVLNGTTGHT 73 Query: 89 TAKITVQHGLIYHDLVKDFGEEAARLYYQSNNEALKWMVQTAEELKLSCGLTREAAYLYA 148 TAK+T QH LIY +L+ FG E A+LYY+SNN AL+++ T + K+ C T E +YLY Sbjct: 74 TAKVTAQHDLIYEELINHFGVEKAKLYYESNNHALQFISDTVQTYKIDCNFTNEDSYLYT 133 Query: 149 DEGDEQTLKQLEDEFKAYGKIGLPGEWQDHISLPLRIDGAIKLPEQARFHPLQYLKGLLD 208 + L+ L E++AY K+ +P E+ + +P+ + A+ + QA+FHPL YLK LL+ Sbjct: 134 TT--DNGLRNLTKEYEAYQKLNIPCEYVQSLPIPIPVQSALVMKNQAQFHPLLYLKTLLE 191 Query: 209 VILDKGGIIYEHTMIGEQVDKDSGVLTLYTEQSKHKISCRHAVSASHYPFYDGGALYFTR 268 ++ GG +YE T +D + G + H+I+C++ VS SH+PFYD + +FTR Sbjct: 192 KFVEMGGKVYEQTT---AIDVEKGDYPQVITKGDHRITCKYIVSCSHFPFYDANSFFFTR 248 Query: 269 LHAERSYCLAIDPETDYEGGMYLSAGNPTRSLRAVEWNGKKLVIVGGDNHKTGQGICTHG 328 ++AERSY LAI +TDY GGMYLS +P RSLR + NG+KL+++GG++HKTGQGI T Sbjct: 249 MYAERSYALAIKAKTDYPGGMYLSIDDPKRSLRYMTSNGEKLILIGGESHKTGQGINTML 308 Query: 329 HYENLEKFAGGLLGIRGIPFRWSTQDLITLDRVPYIAKTAE-DEEIYIATGFRKWGMTNG 387 HYE L FA G+ +P+RWS QDLITLD++PYI E + I++ATG+RKWGMT G Sbjct: 309 HYEALYSFAEATFGVDEVPYRWSAQDLITLDKLPYIGHINERNPNIFVATGYRKWGMTTG 368 Query: 388 TLAARIIADGILRRSNPYTELYDPSRFKTVPAIKTFIAQNANVAKELVAGKLEIVHKRTH 447 T AA ++ D IL+ +PY EL+ PSRF P IKTF++QN +VAK L+ GK+E ++ Sbjct: 369 TAAAHLLKDSILKIHSPYKELFAPSRFHANPDIKTFLSQNIDVAKHLIEGKIETALRKPE 428 Query: 448 ELEPDQGAVVFHDGKRVGAYRDPEGKLHLVDRTCTHMGCETEWNDGERSWDCPCHGSRFS 507 +LE +G+VV +GKR GAY+D EGKLH+VD TCTH+GCE EWN+G+ +WDCPCHGSRFS Sbjct: 429 DLEVGEGSVVHVNGKRAGAYKDTEGKLHIVDTTCTHLGCEVEWNNGDCTWDCPCHGSRFS 488 Query: 508 FDGDVLEGPASVPLTRLE 525 +GDV+EGPA PL R++ Sbjct: 489 IEGDVIEGPADQPLKRVD 506 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.417 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,248,298,704 Number of extensions: 143224381 Number of successful extensions: 311445 Number of sequences better than 1.0e-05: 458 Number of HSP's gapped: 310958 Number of HSP's successfully gapped: 469 Length of query: 528 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 387 Effective length of database: 1,732,333,088 Effective search space: 670412905056 Effective search space used: 670412905056 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)