BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0553.0007.p
         (136 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7S4.1 B3K7S4_9BACI Ferric-uptake regulator                         223   4e-57
B1DKT1.1 B1DKT1_9BACL Ferric uptake regulator, Fur family             162   7e-39
B7DM59.1 B7DM59_9BACL Ferric uptake regulator, Fur family             156   6e-37
B0K873.1 B0K873_THEP3 Ferric uptake regulator, Fur family             100   4e-20
B0K6W8.1 B0K6W8_THEPX Ferric uptake regulator, Fur family              99   1e-19

>B3K7S4.1 B3K7S4_9BACI Ferric-uptake regulator
          Length = 131

 Score =  223 bits (568), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 100/131 (76%), Positives = 118/131 (90%)

Query: 4   MKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQMIRE 63
           MK+LNLT+QRQAVYD++R SHDHPTAA++MNRLVE+G+NLAYGTVYNSLRYL+DKQ+IRE
Sbjct: 1   MKSLNLTTQRQAVYDVLRESHDHPTAADIMNRLVEKGYNLAYGTVYNSLRYLTDKQLIRE 60

Query: 64  LKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVVFGG 123
           LKLGE+ASRYDAR DEHQHI+CEVCG VDEVMT+VP++W   V+ ET Y+I HAHVVFGG
Sbjct: 61  LKLGESASRYDARTDEHQHIICEVCGKVDEVMTEVPEDWAATVAGETNYVIHHAHVVFGG 120

Query: 124 VCPNCRSKGAK 134
           VCP C+ K  K
Sbjct: 121 VCPECQIKRKK 131


>B1DKT1.1 B1DKT1_9BACL Ferric uptake regulator, Fur family
          Length = 129

 Score =  162 bits (411), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 70/128 (54%), Positives = 99/128 (77%)

Query: 4   MKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQMIRE 63
           M  +NLT QR+ + + ++ S+DHPTAA+++ RL ++G + AYGTVYNSLRYL+D  +IRE
Sbjct: 2   MTKINLTVQRKTILEAIQESNDHPTAADIIERLRDKGVSFAYGTVYNSLRYLTDAGLIRE 61

Query: 64  LKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVVFGG 123
           LKLGEA SRYDAR+D+H HI+C+ CG V+EV+T++P+EW  +++ ET + +  AHVV  G
Sbjct: 62  LKLGEAVSRYDARMDDHHHIMCKQCGRVEEVLTELPEEWLKKIAAETKFKVQDAHVVLEG 121

Query: 124 VCPNCRSK 131
           VC  C SK
Sbjct: 122 VCELCASK 129


>B7DM59.1 B7DM59_9BACL Ferric uptake regulator, Fur family
          Length = 142

 Score =  156 bits (394), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 65/125 (52%), Positives = 96/125 (76%)

Query: 5   KTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQMIREL 64
           K +N T+QR+AV+DIV++S DHPTA E+M RL  +GH  AY TVYN+LRYL++K ++RE+
Sbjct: 4   KGVNWTAQRRAVFDIVQTSPDHPTANEIMERLTARGHRYAYATVYNALRYLTEKGLLREV 63

Query: 65  KLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVVFGGV 124
           K+GE+ASRYDA   EH H++CE CGA+ E    +P+ W  +++++TGY +  A +VF G+
Sbjct: 64  KIGESASRYDANTHEHAHVVCERCGAIAEFEQALPESWMKEMAQQTGYRVVGADLVFRGI 123

Query: 125 CPNCR 129
           CP+C+
Sbjct: 124 CPDCQ 128


>B0K873.1 B0K873_THEP3 Ferric uptake regulator, Fur family
          Length = 135

 Score =  100 bits (249), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/129 (34%), Positives = 77/129 (59%)

Query: 1   MIKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQM 60
           ++K K L +T QR A+ +++R+S +HPTA  +  +L      ++  TVY +L  L +  +
Sbjct: 7   LLKQKGLKVTPQRLAILNLLRNSKEHPTAETIYKKLASDFPTMSLATVYKTLEILKNMGL 66

Query: 61  IRELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVV 120
           I+EL +GE + RYDA  + H H++C  CG V+++   + ++  D+VS+ T Y +    + 
Sbjct: 67  IQELNVGEGSFRYDANTNSHPHVVCISCGKVEDLDESLLKDVLDEVSQYTDYKLVDQKLY 126

Query: 121 FGGVCPNCR 129
           F G CP CR
Sbjct: 127 FYGYCPICR 135


>B0K6W8.1 B0K6W8_THEPX Ferric uptake regulator, Fur family
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 79/131 (60%)

Query: 1   MIKMKTLNLTSQRQAVYDIVRSSHDHPTAAEVMNRLVEQGHNLAYGTVYNSLRYLSDKQM 60
           ++K K L +T QR A+ +++R+S +HPTA  +  +L      ++  TVY +L  L +  +
Sbjct: 31  LLKQKGLKVTPQRLAILNLLRNSKEHPTAETIYKKLASDFPTMSLATVYKTLEVLKNMGL 90

Query: 61  IRELKLGEAASRYDARLDEHQHILCEVCGAVDEVMTQVPQEWTDQVSEETGYLITHAHVV 120
           I+EL +GE++ RYDA  + H H++C  CG V+++   + ++  ++VS+ T Y +    + 
Sbjct: 91  IQELNVGESSFRYDANTNSHPHVVCISCGKVEDLDESLLKDVLEEVSQHTDYKLVEQKLY 150

Query: 121 FGGVCPNCRSK 131
           F G CP C+ K
Sbjct: 151 FYGYCPACQHK 161


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 737,923,977
Number of extensions: 25072123
Number of successful extensions: 83314
Number of sequences better than 1.0e-05: 1332
Number of HSP's gapped: 83330
Number of HSP's successfully gapped: 1332
Length of query: 136
Length of database: 3,060,696,203
Length adjustment: 100
Effective length of query: 36
Effective length of database: 2,118,594,703
Effective search space: 76269409308
Effective search space used: 76269409308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)