BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0553.0003.p
         (134 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7R5.1 B3K7R5_9BACI Putative uncharacterized protein                108   1e-22
Q24VS0.1 Q24VS0_DESHY Putative uncharacterized protein                 65   2e-09
B8G1L4.1 B8G1L4_DESHD Putative uncharacterized protein                 65   2e-09
B2A4X0.1 B2A4X0_NATTJ Putative uncharacterized protein                 57   6e-07
Q5WGZ8.1 Q5WGZ8_BACSK Putative uncharacterized protein                 54   4e-06

>B3K7R5.1 B3K7R5_9BACI Putative uncharacterized protein
          Length = 105

 Score =  108 bits (270), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/102 (55%), Positives = 70/102 (68%)

Query: 20  MSDLFKKAISLGVGLTIVSXXXXXXXXXXXXXRGELAPSESKALVDRLXXXXXXXXXXFK 79
           MSDLFKKAISLG+GLT+VS             RGELAP+ESKALV+RL           K
Sbjct: 1   MSDLFKKAISLGLGLTVVSKEKVEKIVDDLVKRGELAPAESKALVNRLVERGEEEQSQIK 60

Query: 80  SAVHEQVERVLKELKIPVQSDVAELEARIAVLERRVAELEGT 121
           S ++EQV+RVL +L +P +SDVA LE RIA LE++V ELEG+
Sbjct: 61  SYIYEQVQRVLSDLDVPKESDVASLEQRIAALEKKVVELEGS 102


>Q24VS0.1 Q24VS0_DESHY Putative uncharacterized protein
          Length = 98

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%)

Query: 20  MSDLFKKAISLGVGLTIVSXXXXXXXXXXXXXRGELAPSESKALVDRLXXXXXXXXXXFK 79
           M D+ KK ++LG+G  +VS             +GEL+ +ESK L++ L           +
Sbjct: 1   MKDMLKKGLALGLGFAVVSKEQIEKVVDELVKKGELSANESKELMNELVQKGEDQQNEIQ 60

Query: 80  SAVHEQVERVLKELKIPVQSDVAELEARIAVLERR 114
             + EQV+++L EL +P ++D+  LE RIA LE R
Sbjct: 61  VKLKEQVQKILAELNLPTKADIERLENRIAQLESR 95


>B8G1L4.1 B8G1L4_DESHD Putative uncharacterized protein
          Length = 98

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 52/95 (54%)

Query: 20  MSDLFKKAISLGVGLTIVSXXXXXXXXXXXXXRGELAPSESKALVDRLXXXXXXXXXXFK 79
           M D+ KK ++LG+G  +VS             +GEL+ +ESK L++ L           +
Sbjct: 1   MKDMLKKGLALGLGFAVVSKEQIEKVVDELVKKGELSANESKELMNELVQKGEDQQNEIQ 60

Query: 80  SAVHEQVERVLKELKIPVQSDVAELEARIAVLERR 114
             + EQV+++L EL +P ++D+  LE RIA LE R
Sbjct: 61  VRLKEQVQKILTELNLPTKADIERLENRIAQLESR 95


>B2A4X0.1 B2A4X0_NATTJ Putative uncharacterized protein
          Length = 109

 Score = 57.0 bits (136), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 27/100 (27%), Positives = 48/100 (48%)

Query: 20  MSDLFKKAISLGVGLTIVSXXXXXXXXXXXXXRGELAPSESKALVDRLXXXXXXXXXXFK 79
           M +  KK ++ G+GL ++S             +GE+AP ESK +++ +            
Sbjct: 1   MKNFLKKGVNFGLGLAVMSKEQIEKMVDELVKKGEIAPEESKRVINNMMERGEEERSKLN 60

Query: 80  SAVHEQVERVLKELKIPVQSDVAELEARIAVLERRVAELE 119
             + EQ  +V +EL      D+ EL  ++  LE+R+ +LE
Sbjct: 61  DMIQEQTRQVFRELDTATGEDIQELRIKLEELEQRIEKLE 100


>Q5WGZ8.1 Q5WGZ8_BACSK Putative uncharacterized protein
          Length = 103

 Score = 53.9 bits (128), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 47/98 (47%)

Query: 20  MSDLFKKAISLGVGLTIVSXXXXXXXXXXXXXRGELAPSESKALVDRLXXXXXXXXXXFK 79
           M DL     SLGVG+   S             RGE+  SES  L+D L           +
Sbjct: 1   MKDLLNNMYSLGVGVAAASKEQIEKTVNDLVQRGEVKRSESNQLIDDLLAKGQKAQENME 60

Query: 80  SAVHEQVERVLKELKIPVQSDVAELEARIAVLERRVAE 117
           + + E+ ++ L  L +P + +V  L+AR+A LE+ ++E
Sbjct: 61  NMIQERTKQFLSSLDVPTKEEVDALKARVAALEKALSE 98


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.128    0.340 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 552,408,339
Number of extensions: 14719284
Number of successful extensions: 49095
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 49100
Number of HSP's successfully gapped: 5
Length of query: 134
Length of database: 3,060,696,203
Length adjustment: 98
Effective length of query: 36
Effective length of database: 2,137,436,733
Effective search space: 76947722388
Effective search space used: 76947722388
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)