BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0553.0002.p (541 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7R4.1 B3K7R4_9BACI ABC-1 domain protein 701 0.0 Q8ERJ3.1 Q8ERJ3_OCEIH ABC transporter 582 e-164 C5DAU0.1 C5DAU0_9BACI ABC-1 domain protein 555 e-156 Q72YX2.1 Q72YX2_BACC1 ABC1 family protein 547 e-153 Q5KZ47.1 Q5KZ47_GEOKA ABC transporter 543 e-152 >B3K7R4.1 B3K7R4_9BACI ABC-1 domain protein Length = 556 Score = 701 bits (1809), Expect = 0.0, Method: Compositional matrix adjust. Identities = 332/541 (61%), Positives = 430/541 (79%) Query: 1 MALMRHGFGYMVEELGLYHLLSLPRRMITQEVHESLTLGERIRRVLEDLGPTFVKLGQLA 60 MALMRHGFGYMVEE+GL+H+LSLP R ++E E++TLGERIRRVLEDLGP FVKLGQLA Sbjct: 16 MALMRHGFGYMVEEMGLFHVLSLPVRWSSKEQPETITLGERIRRVLEDLGPAFVKLGQLA 75 Query: 61 STRSDLLPDSIIQELVKLQDSVPPFSAETARNILEQELDQPIDEMFSYFENAPLAAASIG 120 STRSDLLPD IIQELVKLQ+ VPPF + +AR ++EQE PID++ S F + PLAAASIG Sbjct: 76 STRSDLLPDHIIQELVKLQERVPPFPSASARELIEQEWGMPIDDVLSEFGDKPLAAASIG 135 Query: 121 QVHRAVLHGGQSVAVKIQRPGVMRTMTRDLEILQDLSALAERKLDWAKQYGLTRMVEEFS 180 QVH L G+ VA+K+QRPGV R + RDLEIL+DL ++AER +W KQY + R+V+EF+ Sbjct: 136 QVHAGRLKSGELVAIKVQRPGVARMIGRDLEILRDLISIAERHWEWVKQYRVDRIVDEFA 195 Query: 181 RALLAELDYGQEGRNAERIAGQLTEHDQVYIPAIFWDYSSTRVLTMEYVEGITLNHREEL 240 RA++AELDY E RNAE+IA ++TE + V+IP I+WDY+S++VL MEY EG+TL+ R+E+ Sbjct: 196 RAMMAELDYSHEARNAEKIASRMTEQEFVHIPRIYWDYTSSKVLMMEYAEGLTLSRRQEI 255 Query: 241 LLKGVKLKTLAQQLVEMMLNQIFIHGFFHADPHPGNVMLLDDGKLALIDFGMVGRLSEEM 300 + KG LK +A+ L + ML QIFI GFFHADPHPGN+++ +DGKL +DFG+VG LSE+M Sbjct: 256 VAKGHDLKAIAEHLTDGMLQQIFIEGFFHADPHPGNLLVREDGKLVFLDFGLVGHLSEDM 315 Query: 301 KDSLSALVIALMRKNTDSMVRAILRLGVIPEEADRMALHDDMDRLREAYYDIPFKQVSIG 360 KD LS L+IALMR+N++ M+RAI R+G+IP++ D AL DMDRLRE YYD+PF QV IG Sbjct: 316 KDHLSGLIIALMRRNSEGMIRAISRMGLIPDDCDMDALRSDMDRLREEYYDVPFAQVRIG 375 Query: 361 KALNDLFGIARKHRLVIPPDLAMLGKTMLTLEGVVGNLDPSFSIVQMAEPFGRRLVRQRF 420 KAL DLF +A++H++++PPD+ +LGK++LTLEGV+ LDPS SI+ MAEPFGR+L+++R+ Sbjct: 376 KALTDLFAVAQRHQIMLPPDMTLLGKSLLTLEGVIEMLDPSLSIIDMAEPFGRKLLKKRY 435 Query: 421 SGSRLQRKILGGVADLAESLVELPAQARQLSAXXXXXXXXXXXXXXXXXXIEHKVSRVGN 480 + R+ RK+L GVA LAESL++LP QARQLSA + K+ ++ N Sbjct: 436 NTRRISRKVLDGVAGLAESLLDLPGQARQLSALISKGKLRVEISVPELKMLMRKLDQISN 495 Query: 481 RLSFSIVLLAFSIIMAGLIIASSLRGEPSMLWDFPIVEIGSVIALLMILWLLYSIFKSGR 540 RLSFSIVLLAFSIIM GLII SSL EP M+W FP++E+G ++ALLM+ WLLY+IFKSGR Sbjct: 496 RLSFSIVLLAFSIIMVGLIIGSSLSREPMMIWSFPVIEVGFIVALLMVAWLLYAIFKSGR 555 Query: 541 F 541 F Sbjct: 556 F 556 >Q8ERJ3.1 Q8ERJ3_OCEIH ABC transporter Length = 551 Score = 582 bits (1501), Expect = e-164, Method: Compositional matrix adjust. Identities = 281/544 (51%), Positives = 383/544 (70%), Gaps = 4/544 (0%) Query: 1 MALMRHGFGYMVEELGLYHLLSLPRRMITQ---EVHESLTLGERIRRVLEDLGPTFVKLG 57 +A R+GFGY+V+ELGL+ + SLP+R+ Q EVH T GERIR LE+LGPTF+KLG Sbjct: 9 VAFSRNGFGYIVKELGLHKISSLPKRLFEQGDREVHNKTT-GERIRLFLEELGPTFIKLG 67 Query: 58 QLASTRSDLLPDSIIQELVKLQDSVPPFSAETARNILEQELDQPIDEMFSYFENAPLAAA 117 Q+ASTR DL+P II+EL KLQD V PFS + I+++EL +PID +F F+ P+AAA Sbjct: 68 QIASTRQDLIPKDIIEELEKLQDQVAPFSFSDVKEIIDKELQEPIDVVFESFDEDPIAAA 127 Query: 118 SIGQVHRAVLHGGQSVAVKIQRPGVMRTMTRDLEILQDLSALAERKLDWAKQYGLTRMVE 177 SIGQVH VL GQ VAVKIQRP + + DLEIL +++ LAE +LDWAK+Y L +++ Sbjct: 128 SIGQVHYGVLRTGQEVAVKIQRPNLEEKVHTDLEILMNIAKLAESRLDWAKKYQLCAIIK 187 Query: 178 EFSRALLAELDYGQEGRNAERIAGQLTEHDQVYIPAIFWDYSSTRVLTMEYVEGITLNHR 237 EFS +L AELDY EGRNA RIA Q +HD V +P ++WD ++ +VLTMEY++GI L+ Sbjct: 188 EFSNSLTAELDYTLEGRNAHRIAQQFKKHDDVVVPNVYWDLTTEKVLTMEYIKGIKLDEN 247 Query: 238 EELLLKGVKLKTLAQQLVEMMLNQIFIHGFFHADPHPGNVMLLDDGKLALIDFGMVGRLS 297 +L+ +G K +A++L++ QI I GFFHADPHPGNVM+L + K+ +DFGMVGRL+ Sbjct: 248 TKLVREGYNPKLIAEKLIQKQFQQILIDGFFHADPHPGNVMVLPNHKILFMDFGMVGRLT 307 Query: 298 EEMKDSLSALVIALMRKNTDSMVRAILRLGVIPEEADRMALHDDMDRLREAYYDIPFKQV 357 MKD LS+L++A+MR+NT S+++AI R+G++ E D ++ D+D LR+ YYDIPF QV Sbjct: 308 ATMKDHLSSLIVAIMRQNTKSIIKAIYRMGIVSEGVDADYMYADIDDLRDKYYDIPFSQV 367 Query: 358 SIGKALNDLFGIARKHRLVIPPDLAMLGKTMLTLEGVVGNLDPSFSIVQMAEPFGRRLVR 417 SIG+A+NDLF +A H + IP DL+++GK++LTLEG V LDP SIV++AEPFG+RL+R Sbjct: 368 SIGEAINDLFRVATTHGIRIPTDLSLVGKSLLTLEGTVERLDPDISIVKIAEPFGKRLLR 427 Query: 418 QRFSGSRLQRKILGGVADLAESLVELPAQARQLSAXXXXXXXXXXXXXXXXXXIEHKVSR 477 +++ ++ ++ D + +++ P L K+ R Sbjct: 428 EKYQPKKVADEVYQQAEDYKDLILDFPDHINHLYKVIRRGKLPLEISVSRVEAFLKKLDR 487 Query: 478 VGNRLSFSIVLLAFSIIMAGLIIASSLRGEPSMLWDFPIVEIGSVIALLMILWLLYSIFK 537 + NRLSFSIVLLAFSIIM GLII S+L GE S LW P++EIG V+A+ M LWLLYSIF+ Sbjct: 488 ISNRLSFSIVLLAFSIIMVGLIIGSALAGESSYLWSLPVIEIGFVVAIGMFLWLLYSIFR 547 Query: 538 SGRF 541 SGRF Sbjct: 548 SGRF 551 >C5DAU0.1 C5DAU0_9BACI ABC-1 domain protein Length = 557 Score = 555 bits (1429), Expect = e-156, Method: Compositional matrix adjust. Identities = 279/541 (51%), Positives = 376/541 (69%) Query: 1 MALMRHGFGYMVEELGLYHLLSLPRRMITQEVHESLTLGERIRRVLEDLGPTFVKLGQLA 60 +AL+RHGF +VEE+G LSLP+R+ + + T+GERIR VLE+LGPTFVKLGQLA Sbjct: 17 VALLRHGFEMVVEEIGFSQFLSLPQRLRVGKKKDEKTIGERIRLVLEELGPTFVKLGQLA 76 Query: 61 STRSDLLPDSIIQELVKLQDSVPPFSAETARNILEQELDQPIDEMFSYFENAPLAAASIG 120 STR DL+P+ II+EL KLQD VPPFS R I+E+EL + +D +F FE PLAAASIG Sbjct: 77 STRPDLIPEHIIRELEKLQDQVPPFSFADVRRIIEEELGEELDHIFRSFEEVPLAAASIG 136 Query: 121 QVHRAVLHGGQSVAVKIQRPGVMRTMTRDLEILQDLSALAERKLDWAKQYGLTRMVEEFS 180 QVHRAVLH G+ VAVKIQRP + + DLEILQDL+ALAER+L+WA+QY + +++E S Sbjct: 137 QVHRAVLHSGERVAVKIQRPHIASVIETDLEILQDLTALAERRLEWAEQYQIRDILDELS 196 Query: 181 RALLAELDYGQEGRNAERIAGQLTEHDQVYIPAIFWDYSSTRVLTMEYVEGITLNHREEL 240 ++L ELDY E RNAE+ + Q +Y+P +FWDYS+ +VLTMEYVEGI L E L Sbjct: 197 KSLRLELDYTVEARNAEKFSKQFQSDPTIYVPKVFWDYSTKKVLTMEYVEGIKLGELERL 256 Query: 241 LLKGVKLKTLAQQLVEMMLNQIFIHGFFHADPHPGNVMLLDDGKLALIDFGMVGRLSEEM 300 G LK LA++L + M QIF+ GFFH DPHPGNV+ L +A IDFGMVGR++ EM Sbjct: 257 KQHGYNLKILAERLAKGMFQQIFMEGFFHGDPHPGNVLALSGDVIAFIDFGMVGRITPEM 316 Query: 301 KDSLSALVIALMRKNTDSMVRAILRLGVIPEEADRMALHDDMDRLREAYYDIPFKQVSIG 360 K LS+L+IALMR++TD +++ I +G++P+E + L +D+++LRE YY IP +VS+G Sbjct: 317 KYHLSSLIIALMRQSTDGVMKTIGDMGLVPDEVNVSQLREDIEQLREKYYHIPLSKVSLG 376 Query: 361 KALNDLFGIARKHRLVIPPDLAMLGKTMLTLEGVVGNLDPSFSIVQMAEPFGRRLVRQRF 420 +A+ DL +A +H + IP DL +LGK +LT+EG+V LDP FSI+ AEPFGR+L+++R Sbjct: 377 EAVQDLLHVAFRHSIRIPSDLTLLGKALLTVEGIVEKLDPDFSIIDFAEPFGRQLLKERM 436 Query: 421 SGSRLQRKILGGVADLAESLVELPAQARQLSAXXXXXXXXXXXXXXXXXXIEHKVSRVGN 480 + +D E LV+LP ++L+ + K+ ++ N Sbjct: 437 RPKNVAEMAWKRFSDYGELLVDLPKNIKELTRLMNQGKVRLEIGIPDLDFLLRKLDQISN 496 Query: 481 RLSFSIVLLAFSIIMAGLIIASSLRGEPSMLWDFPIVEIGSVIALLMILWLLYSIFKSGR 540 RLSFSIVLL+FSIIM G+II SS+ + ++LW P +EIG +A LM WLLYSIF+SGR Sbjct: 497 RLSFSIVLLSFSIIMVGIIIGSSMGRQSTLLWKIPAIEIGFCVATLMFCWLLYSIFRSGR 556 Query: 541 F 541 F Sbjct: 557 F 557 >Q72YX2.1 Q72YX2_BACC1 ABC1 family protein Length = 558 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 263/544 (48%), Positives = 384/544 (70%), Gaps = 4/544 (0%) Query: 1 MALMRHGFGYMVEELGLYHLLSLPRRMIT---QEVHESLTLGERIRRVLEDLGPTFVKLG 57 MA R+GFG +V+ELGL LLS P+R QE+H T ERIR LE+LGPTF+K+G Sbjct: 16 MAFSRNGFGLIVKELGLQDLLSFPKRFNKVEQQEIHLK-TKAERIRSFLEELGPTFIKIG 74 Query: 58 QLASTRSDLLPDSIIQELVKLQDSVPPFSAETARNILEQELDQPIDEMFSYFENAPLAAA 117 Q+ASTR DL+P II EL +LQD V FS + + I+E+ELD I+++F F+ PLAAA Sbjct: 75 QIASTRPDLIPADIIHELEQLQDKVSSFSYQEVKQIIEEELDCAIEDIFEEFQENPLAAA 134 Query: 118 SIGQVHRAVLHGGQSVAVKIQRPGVMRTMTRDLEILQDLSALAERKLDWAKQYGLTRMVE 177 SIGQVH +L G+ VA+KIQRP + + + DLEILQ L+ LAE +L+WA +Y L ++E Sbjct: 135 SIGQVHYGLLKSGERVAIKIQRPNIEKIIETDLEILQHLAELAEIRLEWAARYQLRDIIE 194 Query: 178 EFSRALLAELDYGQEGRNAERIAGQLTEHDQVYIPAIFWDYSSTRVLTMEYVEGITLNHR 237 E S++L AEL+Y EG+NAE++A Q + + +P ++WDY++++VLTMEY+EGI LN Sbjct: 195 ELSKSLRAELNYTIEGQNAEKVAHQFKYNPNICVPKVYWDYTTSKVLTMEYIEGIKLNEL 254 Query: 238 EELLLKGVKLKTLAQQLVEMMLNQIFIHGFFHADPHPGNVMLLDDGKLALIDFGMVGRLS 297 +++ +G+ K LA+++V+ +L+QI I GFFH DPHPGN++ L + +DFGMVG LS Sbjct: 255 KKMDNQGLNRKVLAERVVQSILHQILIEGFFHGDPHPGNIIFLPGEVIVFMDFGMVGSLS 314 Query: 298 EEMKDSLSALVIALMRKNTDSMVRAILRLGVIPEEADRMALHDDMDRLREAYYDIPFKQV 357 E+K L++LVI++MR+NT +++AI ++G++P++ + L D++ L++ YYD+P Q+ Sbjct: 315 PELKQHLASLVISMMRQNTRGVIKAITQMGLVPDDVNMKQLTADVEYLKQNYYDVPLSQL 374 Query: 358 SIGKALNDLFGIARKHRLVIPPDLAMLGKTMLTLEGVVGNLDPSFSIVQMAEPFGRRLVR 417 S+GKA+ +LF IA KH + IP D+ +LGKT+LT+EG+V LDP SI+++AEPFGR+L++ Sbjct: 375 SLGKAVQELFNIAYKHHIQIPSDITLLGKTLLTIEGLVEKLDPELSILKVAEPFGRQLLK 434 Query: 418 QRFSGSRLQRKILGGVADLAESLVELPAQARQLSAXXXXXXXXXXXXXXXXXXIEHKVSR 477 +R+ ++ +L V + E L++LP Q ++L+A K+ R Sbjct: 435 ERYHPRKVTEDVLDYVIENGEILIQLPKQLKELTAVMQKGNMRIAITIPELNLFLTKLDR 494 Query: 478 VGNRLSFSIVLLAFSIIMAGLIIASSLRGEPSMLWDFPIVEIGSVIALLMILWLLYSIFK 537 + NRLSFSIVLL+FSIIM GLII SSL + ++LW+ P +EIG +A+LM LWLLYSIFK Sbjct: 495 ISNRLSFSIVLLSFSIIMVGLIIGSSLSRKSTLLWNLPAIEIGFGVAILMFLWLLYSIFK 554 Query: 538 SGRF 541 SG+F Sbjct: 555 SGKF 558 >Q5KZ47.1 Q5KZ47_GEOKA ABC transporter Length = 558 Score = 543 bits (1399), Expect = e-152, Method: Compositional matrix adjust. Identities = 274/541 (50%), Positives = 362/541 (66%), Gaps = 1/541 (0%) Query: 2 ALMRHGFGYMVEELGLYHLLSLPRRMITQE-VHESLTLGERIRRVLEDLGPTFVKLGQLA 60 +L+RHGFG +V+ELG LSLP R ++ E T+GER+R VLE+LGPTFVKLGQ+A Sbjct: 18 SLLRHGFGMIVDELGFSSFLSLPPRWKAEQGKKEGKTVGERLRLVLEELGPTFVKLGQIA 77 Query: 61 STRSDLLPDSIIQELVKLQDSVPPFSAETARNILEQELDQPIDEMFSYFENAPLAAASIG 120 STR DL+P II EL KLQD VPPF R I+E E ++ +F FE PLAAAS+G Sbjct: 78 STRPDLIPAPIISELEKLQDQVPPFPFADVRRIVEAEFGSSLETLFRSFEEMPLAAASLG 137 Query: 121 QVHRAVLHGGQSVAVKIQRPGVMRTMTRDLEILQDLSALAERKLDWAKQYGLTRMVEEFS 180 QVHRAVL GQ+VAVK+QRP + + DLEILQDL+ LAER+LDWA Y L+ +V+E + Sbjct: 138 QVHRAVLPSGQAVAVKVQRPHIAARVETDLEILQDLAVLAERRLDWAATYQLSEIVDELA 197 Query: 181 RALLAELDYGQEGRNAERIAGQLTEHDQVYIPAIFWDYSSTRVLTMEYVEGITLNHREEL 240 R+L ELDY E R+AER A Q VY+P +FWDY++ VLTMEYVEGI L E L Sbjct: 198 RSLRQELDYTVEARHAERFARQFAGDSSVYVPKVFWDYTTKTVLTMEYVEGIKLGEIERL 257 Query: 241 LLKGVKLKTLAQQLVEMMLNQIFIHGFFHADPHPGNVMLLDDGKLALIDFGMVGRLSEEM 300 G LKT+A++L E Q+F HGFFH DPHPGNV +LDDG L+ IDFG++GRL + Sbjct: 258 KANGHSLKTIAERLAEATFQQMFEHGFFHGDPHPGNVFVLDDGTLSFIDFGLMGRLRPHV 317 Query: 301 KDSLSALVIALMRKNTDSMVRAILRLGVIPEEADRMALHDDMDRLREAYYDIPFKQVSIG 360 K LS+L+IALMR+NTD ++ AI LG++P+ D L DD+D LRE YY +P ++S+G Sbjct: 318 KHHLSSLIIALMRQNTDGVLGAIYGLGIVPDGVDEGKLRDDIDELREKYYRVPLGEISLG 377 Query: 361 KALNDLFGIARKHRLVIPPDLAMLGKTMLTLEGVVGNLDPSFSIVQMAEPFGRRLVRQRF 420 +A+ DL +A +H + IP DL +LGK +LT+EGVV LDP F I+ +AEPFGR+L+++R Sbjct: 378 EAVEDLLSVAFRHGIRIPSDLTLLGKALLTVEGVVETLDPQFRIMDVAEPFGRKLMKERL 437 Query: 421 SGSRLQRKILGGVADLAESLVELPAQARQLSAXXXXXXXXXXXXXXXXXXIEHKVSRVGN 480 R+ + D E L+ LP ++ + + K+ ++ N Sbjct: 438 RPDRVAETAWKRIFDYGEWLLRLPDSVKEWTKMMRHGKLRLEITAPDLETLLKKLDQITN 497 Query: 481 RLSFSIVLLAFSIIMAGLIIASSLRGEPSMLWDFPIVEIGSVIALLMILWLLYSIFKSGR 540 RLSFSIVLL+ SI++AGL+IASSL ++LW P VEIG + + WLLYSIF+SG+ Sbjct: 498 RLSFSIVLLSLSIVLAGLMIASSLGRPSTLLWKIPAVEIGLGASAFLFGWLLYSIFRSGK 557 Query: 541 F 541 F Sbjct: 558 F 558 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.139 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,816,711,082 Number of extensions: 107608342 Number of successful extensions: 343637 Number of sequences better than 1.0e-05: 2335 Number of HSP's gapped: 338375 Number of HSP's successfully gapped: 2380 Length of query: 541 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 400 Effective length of database: 1,732,333,088 Effective search space: 692933235200 Effective search space used: 692933235200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 134 (56.2 bits)