BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0551.0002.p
         (120 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C3J323.1 C3J323_9BACI Transcriptional regulator, MarR family          140   3e-32
B7YDA7.1 B7YDA7_9BACI Transcriptional regulator, MarR family          140   3e-32
A3I4W7.1 A3I4W7_9BACI Transcriptional regulator, MarR family pro...   139   8e-32
B1HP47.1 B1HP47_LYSSC Transcriptional regulator, MarR family          139   9e-32
C5D7V4.1 C5D7V4_9BACI Transcriptional regulator, MarR family          138   2e-31

>C3J323.1 C3J323_9BACI Transcriptional regulator, MarR family
          Length = 149

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 82/118 (69%)

Query: 2   DHAVKDMKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLKR 61
           D   K ++S G+   EF VLE+LYH+   PLQQIGEKIL+ SGSITY IDKLE +GL+ R
Sbjct: 27  DQVNKSIQSFGVNPTEFAVLELLYHKGDQPLQQIGEKILLASGSITYVIDKLENKGLIIR 86

Query: 62  VPCSEDRRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLGKG 119
             C  DRRVTYA ITD+GR+    +FP+H  +IH  +  L  EEK QAI LLKKLG G
Sbjct: 87  RACERDRRVTYASITDSGRQFIQRVFPEHAETIHETVAALTPEEKEQAIVLLKKLGYG 144


>B7YDA7.1 B7YDA7_9BACI Transcriptional regulator, MarR family
          Length = 149

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/118 (57%), Positives = 82/118 (69%)

Query: 2   DHAVKDMKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLKR 61
           D   K ++S G+   EF VLE+LYH+   PLQQIGEKIL+ SGSITY IDKLE +GL+ R
Sbjct: 27  DQVNKSIQSFGVNPTEFAVLELLYHKGDQPLQQIGEKILLASGSITYVIDKLENKGLIIR 86

Query: 62  VPCSEDRRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLGKG 119
             C  DRRVTYA ITD+GR+    +FP+H  +IH  +  L  EEK QAI LLKKLG G
Sbjct: 87  RACERDRRVTYASITDSGRQFIQRVFPEHAETIHETVAALTPEEKEQAIVLLKKLGYG 144


>A3I4W7.1 A3I4W7_9BACI Transcriptional regulator, MarR family protein
          Length = 148

 Score =  139 bits (350), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 80/113 (70%)

Query: 8   MKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLKRVPCSED 67
            + +GL   EF VLE+LYH+ R PLQQIG KIL+ SGSITY IDKLEKRG L RV C  D
Sbjct: 31  FQDNGLNPTEFAVLELLYHKGRQPLQQIGNKILLASGSITYVIDKLEKRGYLLRVSCPSD 90

Query: 68  RRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLGKGV 120
           RRVTYAEITD G     ++FPKH   +H +M  L+ EEK QAI LLKK+G  +
Sbjct: 91  RRVTYAEITDEGEAFMGELFPKHEQHLHEIMSVLSSEEKEQAITLLKKMGLSI 143


>B1HP47.1 B1HP47_LYSSC Transcriptional regulator, MarR family
          Length = 148

 Score =  139 bits (350), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 80/113 (70%)

Query: 8   MKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLKRVPCSED 67
            + +GL   EF VLE+LYH+ R PLQQIG KIL+ SGSITY IDKLEKRG L RV C  D
Sbjct: 31  FQDNGLNPTEFAVLELLYHKGRQPLQQIGNKILLASGSITYVIDKLEKRGYLLRVSCPSD 90

Query: 68  RRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLGKGV 120
           RRVTYAEITD G     ++FPKH   +H +M  L+ EEK QAI LLKK+G  +
Sbjct: 91  RRVTYAEITDEGEAFMGELFPKHEQHLHEIMSVLSSEEKEQAITLLKKMGLSI 143


>C5D7V4.1 C5D7V4_9BACI Transcriptional regulator, MarR family
          Length = 147

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/118 (56%), Positives = 82/118 (69%)

Query: 2   DHAVKDMKSHGLASAEFMVLEVLYHRTRIPLQQIGEKILVTSGSITYNIDKLEKRGLLKR 61
           D   K ++S G+   EF VLE+LYH+   PLQQIG KIL+ SGSITY IDKLE++GL+ R
Sbjct: 26  DQVNKSIQSFGVNPTEFAVLELLYHKGDQPLQQIGGKILLASGSITYVIDKLEQKGLIVR 85

Query: 62  VPCSEDRRVTYAEITDAGRELFDDIFPKHVSSIHSLMGGLNQEEKSQAIQLLKKLGKG 119
             C  DRRVTYA IT+ GR   + +FP+H  +IH  + GL  EEK QAI LLKKLG G
Sbjct: 86  KACETDRRVTYASITEKGRAFIEKVFPEHAQTIHETVSGLTPEEKEQAIALLKKLGYG 143


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 636,852,581
Number of extensions: 22516566
Number of successful extensions: 73507
Number of sequences better than 1.0e-05: 949
Number of HSP's gapped: 74100
Number of HSP's successfully gapped: 949
Length of query: 120
Length of database: 3,060,696,203
Length adjustment: 86
Effective length of query: 34
Effective length of database: 2,250,488,913
Effective search space: 76516623042
Effective search space used: 76516623042
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)