BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0550.0001.p (148 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K3U0.1 B3K3U0_9BACI Alkylhydroperoxidase like protein, AhpD fa... 189 6e-47 B1DLC7.1 B1DLC7_9BACL Alkylhydroperoxidase like protein, AhpD fa... 184 2e-45 C0Z642.1 C0Z642_BREBN Putative uncharacterized protein ydfG 163 4e-39 C3HC05.1 C3HC05_BACTU Putative uncharacterized protein 143 6e-33 Q65CN6.1 Q65CN6_BACLD YdfG 142 7e-33 >B3K3U0.1 B3K3U0_9BACI Alkylhydroperoxidase like protein, AhpD family Length = 148 Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 76/148 (51%), Positives = 115/148 (77%) Query: 1 MSLRFNYRAVNEQAFRAMMTLEQYGGGRIKDKVLYELVKIRVSQINGCAFCLDMHAKDLM 60 M LR NYR+ N +AF+ ++ LEQ D LYE++K+R SQINGC+FC+DMH+KDL+ Sbjct: 1 MELRMNYRSANPEAFKTLLALEQAAQKSGLDHKLYEIIKLRASQINGCSFCVDMHSKDLL 60 Query: 61 KLGDYADHILLLSVWREVPLFTDKEKALLELAETVTLISQAGVPAALYDKVMEHISQEEF 120 +G+ D +LLL +WREVP+++D+E+A++EL E VT +S+AGVP +Y++V +H +++F Sbjct: 61 SMGESVDRLLLLPMWREVPIYSDEERAVIELTECVTKLSEAGVPTEIYERVRKHFDEKQF 120 Query: 121 VDWIMVINTINSWNRIAISTGMYPGCFN 148 VD +M I TIN+WNRI ++TG++PGCF+ Sbjct: 121 VDLVMAITTINAWNRIGVATGLFPGCFD 148 >B1DLC7.1 B1DLC7_9BACL Alkylhydroperoxidase like protein, AhpD family Length = 149 Score = 184 bits (468), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 84/147 (57%), Positives = 103/147 (70%) Query: 1 MSLRFNYRAVNEQAFRAMMTLEQYGGGRIKDKVLYELVKIRVSQINGCAFCLDMHAKDLM 60 M +R +YR N AF+A+M LE DK LYEL+KIR SQINGCAFCLDMH D Sbjct: 1 MKIRLDYRTANPAAFQALMKLEGVSKQLNPDKTLYELIKIRASQINGCAFCLDMHTADAR 60 Query: 61 KLGDYADHILLLSVWREVPLFTDKEKALLELAETVTLISQAGVPAALYDKVMEHISQEEF 120 KLG+ I L++VW+E P FT +E+A L L E VTLIS AGVP +YD+V H + EE+ Sbjct: 61 KLGESEQRINLVAVWKEAPQFTARERAALALTEAVTLISNAGVPQDVYDEVRRHFTDEEY 120 Query: 121 VDWIMVINTINSWNRIAISTGMYPGCF 147 V I+ IN INSWNR+AI+TGM+PGCF Sbjct: 121 VGLILAINAINSWNRVAIATGMFPGCF 147 >C0Z642.1 C0Z642_BREBN Putative uncharacterized protein ydfG Length = 148 Score = 163 bits (413), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 77/142 (54%), Positives = 99/142 (69%) Query: 1 MSLRFNYRAVNEQAFRAMMTLEQYGGGRIKDKVLYELVKIRVSQINGCAFCLDMHAKDLM 60 M R N+RAVN +A++ M+ LE++ DK L EL+KIR SQINGCAFC+DMH +D Sbjct: 1 MQARINHRAVNPEAYQTMLKLEKFVNESGLDKKLIELIKIRASQINGCAFCMDMHTQDAR 60 Query: 61 KLGDYADHILLLSVWREVPLFTDKEKALLELAETVTLISQAGVPAALYDKVMEHISQEEF 120 KLG+ I LLSVWRE ++T+ E+A+L L E VT+I+ GV LY +V EH + ++ Sbjct: 61 KLGETEQRIYLLSVWRESAVYTEAERAVLALTEAVTVITANGVSEELYQQVREHFDENQY 120 Query: 121 VDWIMVINTINSWNRIAISTGM 142 V IM INTIN WNRIAISTGM Sbjct: 121 VSLIMAINTINCWNRIAISTGM 142 >C3HC05.1 C3HC05_BACTU Putative uncharacterized protein Length = 147 Score = 143 bits (360), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 66/141 (46%), Positives = 90/141 (63%) Query: 1 MSLRFNYRAVNEQAFRAMMTLEQYGGGRIKDKVLYELVKIRVSQINGCAFCLDMHAKDLM 60 MS R +Y V + MM +EQY +++ EL+KIRVSQINGCAFC+DMH D Sbjct: 1 MSQRISYYDVAPDGMKIMMDMEQYTKKSTINRITRELIKIRVSQINGCAFCMDMHTSDAR 60 Query: 61 KLGDYADHILLLSVWREVPLFTDKEKALLELAETVTLISQAGVPAALYDKVMEHISQEEF 120 K+G+ I L+ W E +T +EK LEL+E +TLI VP LY +V EH ++++ Sbjct: 61 KIGETEQRIYCLNAWNECDFYTPEEKVALELSEHITLIPTKRVPEDLYKRVREHYDEKQY 120 Query: 121 VDWIMVINTINSWNRIAISTG 141 VD ++VIN INSWNRI+I+ G Sbjct: 121 VDLVLVINQINSWNRISIAMG 141 >Q65CN6.1 Q65CN6_BACLD YdfG Length = 147 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 66/146 (45%), Positives = 90/146 (61%) Query: 1 MSLRFNYRAVNEQAFRAMMTLEQYGGGRIKDKVLYELVKIRVSQINGCAFCLDMHAKDLM 60 M RF VN + +R M+ LE+ D +L EL+KIR SQ+NGCAFCL+MH KD Sbjct: 1 METRFLMEKVNPEGYRGMLELEKAQASSGIDPILKELIKIRASQLNGCAFCLNMHTKDAR 60 Query: 61 KLGDYADHILLLSVWREVPLFTDKEKALLELAETVTLISQAGVPAALYDKVMEHISQEEF 120 + G+ I L+ WRE P FT+KE+A+L L E VT I + G+P +Y++V H ++ E Sbjct: 61 QNGETEQRIYALNAWREAPFFTEKERAVLALTEAVTRIGEHGLPDEIYNEVRTHFTEAET 120 Query: 121 VDWIMVINTINSWNRIAISTGMYPGC 146 + IM TIN+WNRIAI+T P Sbjct: 121 AELIMAAVTINAWNRIAIATRKMPAA 146 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.137 0.415 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 826,919,259 Number of extensions: 28031607 Number of successful extensions: 92306 Number of sequences better than 1.0e-05: 652 Number of HSP's gapped: 92086 Number of HSP's successfully gapped: 652 Length of query: 148 Length of database: 3,060,696,203 Length adjustment: 110 Effective length of query: 38 Effective length of database: 2,024,384,553 Effective search space: 76926613014 Effective search space used: 76926613014 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 126 (53.1 bits)