BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0043.p (648 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DH17.1 B1DH17_9BACL Threonyl-tRNA synthetase EC=6.1.1.3 947 0.0 B3K5Z4.1 B3K5Z4_9BACI Threonyl-tRNA synthetase EC=6.1.1.3 936 0.0 C0Z9B1.1 C0Z9B1_BREBN Threonyl-tRNA synthetase EC=6.1.1.3 889 0.0 C3B3J3.1 C3B3J3_BACMY Threonyl-tRNA synthetase 857 0.0 C3ALK8.1 C3ALK8_BACMY Threonyl-tRNA synthetase 857 0.0 >B1DH17.1 B1DH17_9BACL Threonyl-tRNA synthetase EC=6.1.1.3 Length = 637 Score = 947 bits (2447), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/637 (69%), Positives = 520/637 (81%), Gaps = 1/637 (0%) Query: 6 MEINVALPDGSIRRYARGTTIAQVAESISTSLKKNAVAGKIDGRLVDFHQRIDHDCHVEI 65 MEI PD SIRR +GTTIAQVAES+ + KK +AG I+G + D + +++ Sbjct: 1 MEIQAVWPDESIRRVLQGTTIAQVAESMDANWKKTIIAGAINGTMADLDETFGDGSRIDM 60 Query: 66 VMADSRDGLFIQRHSTAHLMAQAIQRIYGSSKVKLGIGPVIEDGFYYDIDMDGPLSTDDF 125 + DS +GL+I RHSTAH++AQAI+R+YGS VKLGIGPVIEDGFYYD+D+D LST D Sbjct: 61 IALDSPEGLYISRHSTAHVLAQAIKRLYGSEAVKLGIGPVIEDGFYYDVDLDHSLSTKDL 120 Query: 126 AAIEQEMQKIIGENLPIVRRVVSRTEAIALFAALDQPLKVELIHGLPEDEEISLYEQGEF 185 AIEQEM+ I+ ENLPI RR+VSR EA+ LF +PLK+ELI LP+ E I +YEQGEF Sbjct: 121 EAIEQEMRSIVKENLPIKRRIVSREEALVLFGERGEPLKLELILNLPDGEVIRIYEQGEF 180 Query: 186 TDLCRGPHVASTGQIKAFKLLSIAGAYWRGDSNNPMLQRIYGTAFYKKAQLEEHLHMLEE 245 DLCRGPH+ STG+IKAFKLL +AGAYWRGDS+N MLQRIYGTAF K +L ++L+ LEE Sbjct: 181 ADLCRGPHLPSTGRIKAFKLLHVAGAYWRGDSDNKMLQRIYGTAFLNKTELADYLYQLEE 240 Query: 246 AKKRDHRKLGKELGLFMFSEEAPGMPFYLSKGMVLRTELENFLRGLQRARDYDEVRTPLM 305 AKKRDHRKLGKEL LFMFSEEAPGMPFYL KGM +RT LENF R L DY+EVRTP M Sbjct: 241 AKKRDHRKLGKELELFMFSEEAPGMPFYLPKGMAIRTALENFSRELLNRNDYEEVRTPFM 300 Query: 306 MNNRMWEQSGHWDHYKDNMYFTQVDETKYALKPMNCPGHMLIFKNSLRSYRELPIRMAEF 365 MN RMWEQSGHW+HYKDNMYFT+VDE+++ALKPMNCPGHMLIFKNSLRSYRELP+R+AEF Sbjct: 301 MNKRMWEQSGHWEHYKDNMYFTKVDESEFALKPMNCPGHMLIFKNSLRSYRELPVRLAEF 360 Query: 366 GQVHRHEFSGALNGMMRVRTFCQDDAHLFVLPEQIEEEIASVMDLIGHVYKVFGFEYKVE 425 GQVHRHE SGAL GMMRVRTFCQDDAHLFV P+QIEEEI VM LIG VYKVFGF Y VE Sbjct: 361 GQVHRHELSGALGGMMRVRTFCQDDAHLFVRPDQIEEEIGKVMSLIGEVYKVFGFAYTVE 420 Query: 426 LSTRPDDYMGSEALWDQAEASLQSVLDGRGIDYRVNAGDGAFYGPKIDFHIQDALKRSWQ 485 LSTRP DYMGS+ LWD+AE SL++VLD +G++YR+N GDGAFYGPKIDFHI DALKRSWQ Sbjct: 421 LSTRPADYMGSDELWDEAEQSLKNVLDAQGVNYRINEGDGAFYGPKIDFHIVDALKRSWQ 480 Query: 486 CGTIQLDFQMPEKFDLSYVGEDSQKHRPVVIHRAVYGSIDRFMGILTEHFSGAFPLWLSP 545 CGTIQLDFQMPEKFDLSY+GED++K RPVVIHRA+YGS+DRF+GIL EH+SGAFP+WL+P Sbjct: 481 CGTIQLDFQMPEKFDLSYIGEDNKKQRPVVIHRAIYGSLDRFLGILIEHYSGAFPIWLAP 540 Query: 546 VQVKLLPVSSXXXXDYAFQVKKELQDAGIRVELDLRNEKLGYKIREAQLEKVPYMLVLGE 605 VQ K++PVS DYA QVK +L AGIRVE+D R+EKLG KIR++QLEKVPYMLV+G+ Sbjct: 541 VQAKVIPVSE-HELDYALQVKSQLIQAGIRVEVDARSEKLGNKIRKSQLEKVPYMLVVGK 599 Query: 606 QEQNSGAISVRKRGSGDAGAMSIAEFVRQIVSENAAR 642 E+ SG++SVRKRG + + E IV E R Sbjct: 600 NERLSGSVSVRKRGEAEGSVQQLEEIAGAIVEEFRKR 636 >B3K5Z4.1 B3K5Z4_9BACI Threonyl-tRNA synthetase EC=6.1.1.3 Length = 636 Score = 936 bits (2418), Expect = 0.0, Method: Compositional matrix adjust. Identities = 447/633 (70%), Positives = 528/633 (83%), Gaps = 3/633 (0%) Query: 6 MEINVALPDGSIRRYARGTTIAQVAESISTSLKKNAVAGKIDGRLVDFHQRIDHDCHVEI 65 M I V L DGS + Y TT+ Q+AESI + LKKNAVA K DG+LVD +Q + D V I Sbjct: 1 MSIVVTLQDGSKKEYPAQTTMFQIAESIHSGLKKNAVAAKADGKLVDLNQELREDAEVSI 60 Query: 66 VMADSRDGLFIQRHSTAHLMAQAIQRIYGSSKVKLGIGPVIEDGFYYDIDMDGPLSTDDF 125 + DS DGL++ RHSTAHLMAQA++R+YGS V LG+GPVIEDGFYYD+D+ ++ DD Sbjct: 61 ITLDSEDGLYVYRHSTAHLMAQAVKRLYGSESVHLGVGPVIEDGFYYDMDLGHSITADDL 120 Query: 126 AAIEQEMQKIIGENLPIVRRVVSRTEAIALFAALDQPLKVELIHGLPEDEEISLYEQGEF 185 IE+EMQKI+ E+LPI+R+ V R EA +F D P K+ELI LPEDE IS+YEQGEF Sbjct: 121 ITIEREMQKIVQEDLPILRKEVGRKEAERIFQ--DDPYKMELIRELPEDEVISVYEQGEF 178 Query: 186 TDLCRGPHVASTGQIKAFKLLSIAGAYWRGDSNNPMLQRIYGTAFYKKAQLEEHLHMLEE 245 DLCRGPH+ STG+IKAFKL+S+AGAYWRGDS+N MLQRIYGTAF KK+QL+EHL +LEE Sbjct: 179 VDLCRGPHLPSTGRIKAFKLMSVAGAYWRGDSDNKMLQRIYGTAFPKKSQLDEHLLLLEE 238 Query: 246 AKKRDHRKLGKELGLFMFSEEAPGMPFYLSKGMVLRTELENFLRGLQRARDYDEVRTPLM 305 AKKRDHRKLGKELGLFMFSEEAPGMPF+L GM++R ELE F RGLQ RDYDEVRTPLM Sbjct: 239 AKKRDHRKLGKELGLFMFSEEAPGMPFFLPNGMIIRNELEQFARGLQFHRDYDEVRTPLM 298 Query: 306 MNNRMWEQSGHWDHYKDNMYFTQVDETKYALKPMNCPGHMLIFKNSLRSYRELPIRMAEF 365 MN R+WE SGHWDHYKDNMYFTQVDET+YALKPMNCPGHML++KNSL SYRELPIR++EF Sbjct: 299 MNKRLWEMSGHWDHYKDNMYFTQVDETEYALKPMNCPGHMLVYKNSLHSYRELPIRISEF 358 Query: 366 GQVHRHEFSGALNGMMRVRTFCQDDAHLFVLPEQIEEEIASVMDLIGHVYKVFGFEYKVE 425 GQVHRHEFSGALNGMMRVRTFCQDDAH+FV P+QI+EEI V+D I VY+VFGFEY +E Sbjct: 359 GQVHRHEFSGALNGMMRVRTFCQDDAHIFVRPDQIQEEIKQVIDFISRVYQVFGFEYTIE 418 Query: 426 LSTRPDDYMGSEALWDQAEASLQSVLDGRGIDYRVNAGDGAFYGPKIDFHIQDALKRSWQ 485 LSTRP+D MGSE LW+QAE SLQ VLD G+ YR+N GDGAFYGPKIDFHI D+LKRSWQ Sbjct: 419 LSTRPEDSMGSEELWEQAETSLQQVLDQLGLPYRINEGDGAFYGPKIDFHILDSLKRSWQ 478 Query: 486 CGTIQLDFQMPEKFDLSYVGEDSQKHRPVVIHRAVYGSIDRFMGILTEHFSGAFPLWLSP 545 CGTIQLDFQ PEKFDLSY+GED+QKHRPVVIHRAV+GSI+RF+GILTEH+ GAFP+WL+P Sbjct: 479 CGTIQLDFQFPEKFDLSYIGEDNQKHRPVVIHRAVFGSIERFIGILTEHYGGAFPMWLAP 538 Query: 546 VQVKLLPVSSXXXXDYAFQVKKELQDAGIRVELDLRNEKLGYKIREAQLEKVPYMLVLGE 605 VQV ++PVS DY+ +VKK L++AGIRV +D+RNEKLGYKIREA L K PY LVLGE Sbjct: 539 VQVMIIPVSD-HYIDYSLKVKKRLENAGIRVNVDVRNEKLGYKIREAGLLKTPYTLVLGE 597 Query: 606 QEQNSGAISVRKRGSGDAGAMSIAEFVRQIVSE 638 +E +S +SVRKRG G+ G ++I + + ++ +E Sbjct: 598 KEMDSDHVSVRKRGEGELGEIAIDQVIERLRNE 630 >C0Z9B1.1 C0Z9B1_BREBN Threonyl-tRNA synthetase EC=6.1.1.3 Length = 637 Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust. Identities = 414/634 (65%), Positives = 516/634 (81%), Gaps = 2/634 (0%) Query: 5 IMEINVALPDGSIRRYARGTTIAQVAESISTSLKKNAVAGKIDGRLVDFHQRIDHDCHVE 64 + +I+V PDG++R+Y G TI +A SIS+SLKK AVAGK DG++VD + + D +E Sbjct: 1 MAQIHVTFPDGAVRQYDAGITIEDIAGSISSSLKKKAVAGKKDGKVVDLYTELTDDAAIE 60 Query: 65 IVMADSRDGLFIQRHSTAHLMAQAIQRIYGSSKVKLGIGPVIEDGFYYDIDMDGPLSTDD 124 IV DS DGL + RHSTAHL+AQA++RIYG+ +VK GIGPVIEDGFYYD+D+ LS +D Sbjct: 61 IVTLDSADGLEVYRHSTAHLLAQAVKRIYGA-EVKFGIGPVIEDGFYYDMDIPVSLSPED 119 Query: 125 FAAIEQEMQKIIGENLPIVRRVVSRTEAIALFAALDQPLKVELIHGLPEDEEISLYEQGE 184 IE EM+KI+ E+LPI R+VVSR EA A+F L+ LK+ELI LPED I+LYEQGE Sbjct: 120 LGKIEAEMEKIVKEDLPIRRKVVSREEATAIFQELNDHLKLELIRDLPEDATITLYEQGE 179 Query: 185 FTDLCRGPHVASTGQIKAFKLLSIAGAYWRGDSNNPMLQRIYGTAFYKKAQLEEHLHMLE 244 F DLCRGPH+ STG IKAFKL+S+AGAYWRG + N +LQR+YGTA+ KKA ++E+LH +E Sbjct: 180 FFDLCRGPHLPSTGFIKAFKLMSVAGAYWRGKAENQVLQRVYGTAWPKKADMDEYLHFIE 239 Query: 245 EAKKRDHRKLGKELGLFMFSEEAPGMPFYLSKGMVLRTELENFLRGLQRARDYDEVRTPL 304 EAKKRDHRKLGKELGLFMFSEEAPGMPFYL KG +R ELE F R LQ+ Y EVR+P Sbjct: 240 EAKKRDHRKLGKELGLFMFSEEAPGMPFYLPKGFTVRNELEQFSRRLQQLAQYTEVRSPF 299 Query: 305 MMNNRMWEQSGHWDHYKDNMYFTQVDETKYALKPMNCPGHMLIFKNSLRSYRELPIRMAE 364 +MN R+W++SGHWDHYK+NMYF++VD YALKPMNCPGHMLI+KN + SYR+LPIR +E Sbjct: 300 LMNERLWKESGHWDHYKENMYFSEVDNATYALKPMNCPGHMLIYKNEMHSYRDLPIRYSE 359 Query: 365 FGQVHRHEFSGALNGMMRVRTFCQDDAHLFVLPEQIEEEIASVMDLIGHVYKVFGFEYKV 424 FGQVHRHE+SGALNGM+RVRTFCQDDAH+FV P+QI EI ++ LI +YKVFGFEY V Sbjct: 360 FGQVHRHEYSGALNGMLRVRTFCQDDAHVFVRPDQIASEIKGMITLIDSIYKVFGFEYSV 419 Query: 425 ELSTRPDDYMGSEALWDQAEASLQSVLDGRGIDYRVNAGDGAFYGPKIDFHIQDALKRSW 484 LSTRP+D MGS+ LW+ AE+SL++VL+ G+ Y + GDGAFYGPKIDF I DALKR Sbjct: 420 ALSTRPEDSMGSDELWEAAESSLKTVLEELGMAYEIKDGDGAFYGPKIDFQITDALKRRH 479 Query: 485 QCGTIQLDFQMPEKFDLSYVGEDSQKHRPVVIHRAVYGSIDRFMGILTEHFSGAFPLWLS 544 QCGTIQLDFQMPEKFDL+YVG+D++KHRPVV+HRA+YGS++RF+GIL EH++GAFP+WL+ Sbjct: 480 QCGTIQLDFQMPEKFDLTYVGQDNEKHRPVVLHRAMYGSMERFIGILIEHYAGAFPIWLT 539 Query: 545 PVQVKLLPVSSXXXXDYAFQVKKELQDAGIRVELDLRNEKLGYKIREAQLEKVPYMLVLG 604 P+Q +++ +S YA QV+++LQ AGIRVELD RNEK+GYKIREAQ+EK+PYMLV+G Sbjct: 540 PIQARIMNISEVHMP-YAEQVREKLQQAGIRVELDGRNEKIGYKIREAQVEKIPYMLVIG 598 Query: 605 EQEQNSGAISVRKRGSGDAGAMSIAEFVRQIVSE 638 E+E G +SVRKRG GD GAM++ FV +I +E Sbjct: 599 EKEVADGTLSVRKRGVGDEGAMTVDAFVEKIRAE 632 >C3B3J3.1 C3B3J3_BACMY Threonyl-tRNA synthetase Length = 641 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/631 (61%), Positives = 502/631 (79%), Gaps = 2/631 (0%) Query: 8 INVALPDGSIRRYARGTTIAQVAESISTSLKKNAVAGKIDGRLVDFHQRIDHDCHVEIVM 67 IN+ PDGS + Y +G T+ ++A SIS+SLKK AVAGK++G+L D + I+ D ++I+ Sbjct: 6 INIIFPDGSAKDYVKGITLEEIAASISSSLKKKAVAGKVNGQLFDLRRNIEQDAEIQIIT 65 Query: 68 ADSRDGLFIQRHSTAHLMAQAIQRIYGSSKVKLGIGPVIEDGFYYDIDMDGPLSTDDFAA 127 DS +G+ + RH++AH++AQA++RIYG VKLG+GPVIE+GFYYD+D+ + +D Sbjct: 66 MDSEEGIEVARHTSAHILAQAVKRIYGD--VKLGVGPVIENGFYYDMDLPSSIGIEDLPK 123 Query: 128 IEQEMQKIIGENLPIVRRVVSRTEAIALFAALDQPLKVELIHGLPEDEEISLYEQGEFTD 187 +E+EM+ I+ ENL I R ++R EA LF ++ LK+EL+ +PE+E +++Y+QGEF D Sbjct: 124 LEKEMKNIVNENLKIERVEITRKEAEKLFQDVNDHLKLELLEAIPENEIVTIYKQGEFVD 183 Query: 188 LCRGPHVASTGQIKAFKLLSIAGAYWRGDSNNPMLQRIYGTAFYKKAQLEEHLHMLEEAK 247 LCRGPH+ STG +KAF+L ++GAYWRGDSNN +LQRIYG AF + +LE +LH +EEA Sbjct: 184 LCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELESYLHFVEEAA 243 Query: 248 KRDHRKLGKELGLFMFSEEAPGMPFYLSKGMVLRTELENFLRGLQRARDYDEVRTPLMMN 307 KR+HRKLG EL LFMFSEEAPGMPFYL KG ++R ELE+FLR +Q+ DY EVRTP+MMN Sbjct: 244 KRNHRKLGNELELFMFSEEAPGMPFYLPKGQIVRNELESFLREIQQNYDYQEVRTPIMMN 303 Query: 308 NRMWEQSGHWDHYKDNMYFTQVDETKYALKPMNCPGHMLIFKNSLRSYRELPIRMAEFGQ 367 +WE+SGHWDHYKDNMYF++VD +ALKPMNCPGHMLIFKN L SYR+LPIRM EFGQ Sbjct: 304 QGLWEESGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLIFKNKLHSYRDLPIRMCEFGQ 363 Query: 368 VHRHEFSGALNGMMRVRTFCQDDAHLFVLPEQIEEEIASVMDLIGHVYKVFGFEYKVELS 427 VHRHEFSGALNG++RVRTFCQDDAHLFV PEQIE EI SV+ I +VY+ FGFEY+VELS Sbjct: 364 VHRHEFSGALNGLLRVRTFCQDDAHLFVTPEQIESEIKSVLKQIDYVYRTFGFEYEVELS 423 Query: 428 TRPDDYMGSEALWDQAEASLQSVLDGRGIDYRVNAGDGAFYGPKIDFHIQDALKRSWQCG 487 TRP+D MG + LW+QAE SL++VL +YRVN GDGAFYGPKIDFHI+DAL+RS QCG Sbjct: 424 TRPEDSMGDDELWNQAELSLENVLKSLNYNYRVNEGDGAFYGPKIDFHIKDALQRSHQCG 483 Query: 488 TIQLDFQMPEKFDLSYVGEDSQKHRPVVIHRAVYGSIDRFMGILTEHFSGAFPLWLSPVQ 547 T+QLDFQMPEKFDL+Y+ E ++K RPVVIHRAV GS DRF+GIL EHF GAFP WL+PVQ Sbjct: 484 TVQLDFQMPEKFDLNYIDERNEKRRPVVIHRAVLGSFDRFLGILIEHFGGAFPTWLAPVQ 543 Query: 548 VKLLPVSSXXXXDYAFQVKKELQDAGIRVELDLRNEKLGYKIREAQLEKVPYMLVLGEQE 607 +K++PVS+ Y +++++L+ G+R E D R+EKLGYKIREAQL+K+PY+LV+G++E Sbjct: 544 IKVIPVSNQVHEQYTKEIEEKLKSVGLRAERDARSEKLGYKIREAQLQKIPYILVIGDKE 603 Query: 608 QNSGAISVRKRGSGDAGAMSIAEFVRQIVSE 638 +G+++VRK G + +S++ F+ I E Sbjct: 604 MENGSVNVRKYGEEKSEVVSLSAFMESIRKE 634 >C3ALK8.1 C3ALK8_BACMY Threonyl-tRNA synthetase Length = 641 Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/631 (61%), Positives = 502/631 (79%), Gaps = 2/631 (0%) Query: 8 INVALPDGSIRRYARGTTIAQVAESISTSLKKNAVAGKIDGRLVDFHQRIDHDCHVEIVM 67 IN+ PDGS + Y +G T+ ++A SIS+SLKK AVAGK++G+L D + I+ D ++I+ Sbjct: 6 INIIFPDGSAKDYVKGITLEEIAASISSSLKKKAVAGKVNGQLFDLRRNIEQDAEIQIIT 65 Query: 68 ADSRDGLFIQRHSTAHLMAQAIQRIYGSSKVKLGIGPVIEDGFYYDIDMDGPLSTDDFAA 127 DS +G+ + RH++AH++AQA++RIYG VKLG+GPVIE+GFYYD+D+ + +D Sbjct: 66 MDSEEGIEVARHTSAHILAQAVKRIYGD--VKLGVGPVIENGFYYDMDLPSSIGIEDLPK 123 Query: 128 IEQEMQKIIGENLPIVRRVVSRTEAIALFAALDQPLKVELIHGLPEDEEISLYEQGEFTD 187 +E+EM+ I+ ENL I R ++R EA LF ++ LK+EL+ +PE+E +++Y+QGEF D Sbjct: 124 LEKEMKNIVNENLKIERVEITRKEAEKLFQDVNDHLKLELLEAIPENEIVTIYKQGEFVD 183 Query: 188 LCRGPHVASTGQIKAFKLLSIAGAYWRGDSNNPMLQRIYGTAFYKKAQLEEHLHMLEEAK 247 LCRGPH+ STG +KAF+L ++GAYWRGDSNN +LQRIYG AF + +LE +LH +EEA Sbjct: 184 LCRGPHLPSTGYLKAFQLTHVSGAYWRGDSNNQVLQRIYGVAFSSQKELESYLHFVEEAA 243 Query: 248 KRDHRKLGKELGLFMFSEEAPGMPFYLSKGMVLRTELENFLRGLQRARDYDEVRTPLMMN 307 KR+HRKLG EL LFMFSEEAPGMPFYL KG ++R ELE+FLR +Q+ DY EVRTP+MMN Sbjct: 244 KRNHRKLGNELELFMFSEEAPGMPFYLPKGQIVRNELESFLREIQQNYDYQEVRTPIMMN 303 Query: 308 NRMWEQSGHWDHYKDNMYFTQVDETKYALKPMNCPGHMLIFKNSLRSYRELPIRMAEFGQ 367 +WE+SGHWDHYKDNMYF++VD +ALKPMNCPGHMLIFKN L SYR+LPIRM EFGQ Sbjct: 304 QGLWEESGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLIFKNKLHSYRDLPIRMCEFGQ 363 Query: 368 VHRHEFSGALNGMMRVRTFCQDDAHLFVLPEQIEEEIASVMDLIGHVYKVFGFEYKVELS 427 VHRHEFSGALNG++RVRTFCQDDAHLFV PEQIE EI SV+ I +VY+ FGFEY+VELS Sbjct: 364 VHRHEFSGALNGLLRVRTFCQDDAHLFVTPEQIESEIKSVLKQIDYVYRTFGFEYEVELS 423 Query: 428 TRPDDYMGSEALWDQAEASLQSVLDGRGIDYRVNAGDGAFYGPKIDFHIQDALKRSWQCG 487 TRP+D MG + LW+QAE SL++VL +YRVN GDGAFYGPKIDFHI+DAL+RS QCG Sbjct: 424 TRPEDSMGDDELWNQAELSLENVLKSLNYNYRVNEGDGAFYGPKIDFHIKDALQRSHQCG 483 Query: 488 TIQLDFQMPEKFDLSYVGEDSQKHRPVVIHRAVYGSIDRFMGILTEHFSGAFPLWLSPVQ 547 T+QLDFQMPEKFDL+Y+ E ++K RPVVIHRAV GS DRF+GIL EHF GAFP WL+PVQ Sbjct: 484 TVQLDFQMPEKFDLNYIDERNEKRRPVVIHRAVLGSFDRFLGILIEHFGGAFPTWLAPVQ 543 Query: 548 VKLLPVSSXXXXDYAFQVKKELQDAGIRVELDLRNEKLGYKIREAQLEKVPYMLVLGEQE 607 +K++PVS+ Y +++++L+ G+R E D R+EKLGYKIREAQL+K+PY+LV+G++E Sbjct: 544 IKVIPVSNQVHEQYTKEIEEKLKSVGLRAERDARSEKLGYKIREAQLQKIPYILVIGDKE 603 Query: 608 QNSGAISVRKRGSGDAGAMSIAEFVRQIVSE 638 +G+++VRK G + +S++ F+ I E Sbjct: 604 MENGSVNVRKYGEEKSEVVSLSAFMESIRKE 634 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,825,575,346 Number of extensions: 163285636 Number of successful extensions: 375288 Number of sequences better than 1.0e-05: 2362 Number of HSP's gapped: 367755 Number of HSP's successfully gapped: 2443 Length of query: 648 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 506 Effective length of database: 1,722,912,073 Effective search space: 871793508938 Effective search space used: 871793508938 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 135 (56.6 bits)