BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0041.p (629 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K9M4.1 B3K9M4_9BACI Sensor protein EC=2.7.13.3 549 e-154 B1DG34.1 B1DG34_9BACL Sensor protein EC=2.7.13.3 512 e-143 C0V055.1 C0V055_9BACT PAS domain S-box 338 1e-90 Q74AN8.1 Q74AN8_GEOSL Sensor protein EC=2.7.13.3 316 5e-84 B3KDJ6.1 B3KDJ6_9BACI Sensor protein EC=2.7.13.3 315 9e-84 >B3K9M4.1 B3K9M4_9BACI Sensor protein EC=2.7.13.3 Length = 642 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 277/620 (44%), Positives = 417/620 (67%), Gaps = 11/620 (1%) Query: 13 QQIYDHASFGIALVSPDGLILTVNPAMEQMLGYTRAEFDGRRVGDFSHPDEAVRDIGSLV 72 + +Y A GIALV+ +G ++VNPA +M GYT E + D+ + E + + L+ Sbjct: 14 EHVYKSAPIGIALVTIEGSWISVNPAACKMFGYTDEELMAQPATDYIY-SECINNKDKLL 72 Query: 73 AGMEIGSNEIQLERRYLKKNGENMWGLLSFKRFHDEAGQL-VYYIGQLIDITRQKESERR 131 ++ S+ I +E++ + K+G +W + D+ Q +++I Q++DIT K +E++ Sbjct: 73 RSLDEASSTIAVEKQLVHKDGNVIWASIHVSLVRDDQDQTPLFFISQIVDITDSKVAEQK 132 Query: 132 LQESVERYNSLKKYNHDAVISFGLDGRIINANNMAEKLTGYHIETELIGAELAKLIGQAN 191 LQES+ERY SLKKYNHDA+ISF L+GRIIN N MAE+LTG+ I ELIG +++ LIG+ N Sbjct: 133 LQESIERYTSLKKYNHDAIISFNLEGRIINGNQMAEQLTGFKI-PELIGTKISNLIGERN 191 Query: 192 VGRILEKAIYDDSVEHDIDILVTKEGSTVEVLTSIAPIYVSGQNIGFYLICKDISEQKQL 251 + R+L A + E I+ + K+G VEVL ++API + G+N+GFY+I KD++EQK+L Sbjct: 192 LARVLSSAADYVAAEKGINCIHHKDGHQVEVLATLAPIVIHGKNVGFYIIAKDMTEQKRL 251 Query: 252 LLXXXXXXXXXXXXSEFLAMMSHEIRTPMNGVVGMTDVLLDMTDLTKEQRSYVEVIQKSG 311 ++ SEFLAMMSHEIRTPMNGV+GMTD++L+ T+L +EQR YV++I+KSG Sbjct: 252 IIEKEAAEKTNKAKSEFLAMMSHEIRTPMNGVIGMTDLILE-TELDEEQREYVQIIKKSG 310 Query: 312 XXXXXXXXXXXXXSKIEAGRSELQEHNFDLRKCIKDSFSVVSKKADEKKIELSYTVNHDV 371 SKIE+GR+EL E F LR + ++ +++ KA +K IE++ +V DV Sbjct: 311 TTLLNIINDILDFSKIESGRTELVEETFSLRTALSETLNMILPKALDKNIEVTTSVASDV 370 Query: 372 PDYIYGDAERLKQVLLNLLGNAVKFTSKGSIAVKVRLLKEEACR--LAFTVTDTGIGIDP 429 P+ +YGD +L+QVL+NLL NA+KFT G++++ V+ ++++A + F+VTDTGIG+ Sbjct: 371 PNQVYGDVTKLRQVLMNLLSNAIKFTPNGAVSISVQCVRDQANSKLIQFSVTDTGIGVPS 430 Query: 430 DRLDDIFEPFAQIDSFMSRSHEGTGLGLAISRRIVDMMGGEIYAESD-GKHGSSFTFTIQ 488 +++ +FEPF Q+D +M+R EGTGLGLAI +++V +MGG+I+ E + + GS FTFT+ Sbjct: 431 EKIAQLFEPFYQVDHYMTRQVEGTGLGLAICKKLVQLMGGDIWYERNPNQQGSVFTFTVD 490 Query: 489 FK---EASQIPREHFFEEMLHNTGKVNILLAEDNAINQLVMTKMLEKLGHRVTTVPNGKK 545 F A +P E + + IL+AEDN +NQLV+ KM+EKLG+ TTV NG + Sbjct: 491 FSFNANAGNMPEAGTVHENHSDGSDLKILIAEDNEVNQLVLKKMIEKLGYNSTTVLNGLE 550 Query: 546 AIEAARNQSFDLIFMDLHMPFLNGLKASQIIKEEL-KDKCPRIIAVTANALKGDREKCLE 604 A+EA + +D++FMD+ MPF++G++A Q+IKE D P I+AVTA+A+KGDREK L Sbjct: 551 AVEAFKRYPYDMVFMDIQMPFMDGMEAVQLIKESAPPDHQPYIVAVTAHAIKGDREKYLG 610 Query: 605 AGMDDYISKPVKRETLIKIL 624 GMD+Y+SKPV + I+ Sbjct: 611 MGMDEYVSKPVSLNVISAII 630 >B1DG34.1 B1DG34_9BACL Sensor protein EC=2.7.13.3 Length = 642 Score = 512 bits (1319), Expect = e-143, Method: Compositional matrix adjust. Identities = 280/636 (44%), Positives = 405/636 (63%), Gaps = 15/636 (2%) Query: 1 MQRVNLDQITFNQQIYDHASFGIALVSPDGLILTVNPAMEQMLGYTRAEF---DGRRVGD 57 M+ VN +Q ++++A GIAL+S D + VNPA Q+LG+ R+E D + Sbjct: 1 MEEVNFNQQNMFAHVFNYAPIGIALISLDRRWIDVNPAACQILGHKRSELMTLDPAELIF 60 Query: 58 FSHPDEAVRDIGSLVAGMEIGSNEIQLERRYLKKNGENMWGLLSFKRFHDEA-GQLVYYI 116 S + R L+ G +I + + LE+RYL K+G +W L D + GQ YYI Sbjct: 61 SSRRENLSRKFKQLLEG-KIPT--LNLEKRYLLKDGAIVWVSLHISLVRDGSDGQPWYYI 117 Query: 117 GQLIDITRQKESERRLQESVERYNSLKKYNHDAVISFGLDGRIINANNMAEKLTGYHIET 176 Q++DIT K SE++LQESVERY SLKKYNHD +ISF L G+II N MAEKLTG + + Sbjct: 118 AQIVDITATKMSEQKLQESVERYTSLKKYNHDTIISFDLQGKIIGGNVMAEKLTG-RLVS 176 Query: 177 ELIGAELAKLIGQANVGRILEKAIYDDSVEHDIDILVTKEGSTVEVLTSIAPIYVSGQNI 236 ELIG +A +IG+ + RIL +E I+ ++ +GS VEVL +IAPI V+ ++I Sbjct: 177 ELIGTSIASVIGEDKLARILADNEPYTEIESSINDVLHVDGSYVEVLVTIAPIIVNNRSI 236 Query: 237 GFYLICKDISEQKQLLLXXXXXXXXXXXXSEFLAMMSHEIRTPMNGVVGMTDVLLDMTDL 296 GFYL+ KDI+EQK+LL+ SEF+AMMSHEIRTPMNGV+GMTD+LLD T L Sbjct: 237 GFYLLIKDITEQKKLLIEKETAVRTNEVKSEFMAMMSHEIRTPMNGVIGMTDLLLD-TPL 295 Query: 297 TKEQRSYVEVIQKSGXXXXXXXXXXXXXSKIEAGRSELQEHNFDLRKCIKDSFSVVSKKA 356 +EQ+ YV +I+KSG SK+E+G +EL E F+L I ++F + KA Sbjct: 296 DEEQKEYVTIIRKSGETLLGIINDILDFSKVESGNAELTEEPFNLNTAIAETFDTLMPKA 355 Query: 357 DEKKIELSYTVNHDVPDYIYGDAERLKQVLLNLLGNAVKFTSKGSIAVKVRLLKEEAC-- 414 EK +E ++ +P I GD+ +++Q++LNL+GNA+KFT +GSI V + + E Sbjct: 356 MEKNLEFKVCISPGIPQNIIGDSLKIRQIMLNLIGNAIKFTPRGSIGVSIDKAEAEGANV 415 Query: 415 RLAFTVTDTGIGIDPDRLDDIFEPFAQIDSFMSRSHEGTGLGLAISRRIVDMMGGEIYAE 474 RL F V DTGIG+ D++ +FEPF Q D FM R GTGLGLAI+R++V +M G+IY E Sbjct: 416 RLHFAVKDTGIGVPEDKVPYLFEPFYQADHFMVRQEGGTGLGLAITRKLVQLMDGQIYCE 475 Query: 475 SDGKHGSSFTF--TIQFKEASQIP-REHFFEEMLHNTGKVNILLAEDNAINQLVMTKMLE 531 + G+ F F IQ + + IP E E+ +++IL+AEDN +N+LV+ +MLE Sbjct: 476 PNPGGGTIFRFHILIQAELLTSIPVHESITEKAPQPEEELSILIAEDNEVNRLVLIRMLE 535 Query: 532 KLGHRVTTVPNGKKAIEAARNQSFDLIFMDLHMPFLNGLKASQIIKEELKD-KCPRIIAV 590 KLG+R V NG + +E R + +D++FMD+ MP +NG++AS+I+++ ++ P I+AV Sbjct: 536 KLGYRPKAVSNGAEVVEEVRRKKYDIVFMDIQMPVMNGMEASKILRKTIEPGNLPYIVAV 595 Query: 591 TANALKGDREKCLEAGMDDYISKPVKRETLIKILHQ 626 TANAL GDRE+ + AGM++YISKP+ ++ ++ + Sbjct: 596 TANALVGDRERYMSAGMNEYISKPLHSSAVLTVIQK 631 >C0V055.1 C0V055_9BACT PAS domain S-box Length = 1363 Score = 338 bits (866), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 212/624 (33%), Positives = 336/624 (53%), Gaps = 28/624 (4%) Query: 16 YDHASFGIALVSPDGLILTVNPAMEQMLGYTRAEFDGRRVGDFSHPDEAVRDIGSLVAGM 75 +DHA G+ALV+ DG L VNP++ +MLGY+ E G D +HPD+ D+ + + Sbjct: 589 FDHAPIGMALVATDGRWLRVNPSLCRMLGYSERELLGMTFQDITHPDDLELDLQHVRQVL 648 Query: 76 EIGSNEIQLERRYLKKNGENMWGLLSFKRFHDEAGQLVYYIGQLIDITRQKESERRLQES 135 + + ++E+RY K+G +W LLS D GQ +Y++ Q+ DIT++KE ER + ES Sbjct: 649 DGEIAQYEMEKRYYHKHGSIVWALLSVSLVRDLDGQPLYFVSQIQDITQRKEIERAITES 708 Query: 136 VERYNSLKKYNHDAVISFGLDGRIINANNMAEKLTGYHIETELIGAELAKLIGQ------ 189 ERY L + D +I+ DGR+ N ++ G EL+G + + + Sbjct: 709 EERYRRLVEAFPD-LIAIVQDGRVAYVNPAGARMLGAKDPQELVGRSVLEFVHPERRGEV 767 Query: 190 -ANVGRILEKAIYDDSVEHDIDILVTKEGSTVEVLTSIAPIYVSGQNIGFYLICKDISEQ 248 A + I E DS+E +T +G + + P + +I +DI+E Sbjct: 768 AAQIDSIGEGGPPPDSIEER---FITLDGREIYAEVKVVPTSHEDRPAS-QIIARDITES 823 Query: 249 K----QLLLXXXXXXXXXXXXSEFLAMMSHEIRTPMNGVVGMTDVLLDMTDLTKEQRSYV 304 + +L SEF+A MSHEIRTP+N ++GMT++L D T L++ QR +V Sbjct: 824 RRVAEELRRARDQAIEASRLKSEFVANMSHEIRTPLNAIIGMTELLQD-TPLSERQREFV 882 Query: 305 EVIQKSGXXXXXXXXXXXXXSKIEAGRSELQEHNFDLRKCIKDSFSVVSKKADEKKIELS 364 + IQ S SKIEAG+ L+E +FDL ++ + +++ A K I L Sbjct: 883 QTIQTSSQSLLSIINDILDFSKIEAGKMVLEEVDFDLVSLVEGTSEMLAGAARGKGISLM 942 Query: 365 YTVNHDVPDYIYGDAERLKQVLLNLLGNAVKFTSKGSIAVKV--RLLKEEACRLAFTVTD 422 V+ +P + GD RL+QVLLNLL NAVKFT +G + ++V + L F V D Sbjct: 943 TFVDPTIPRTLIGDPARLRQVLLNLLSNAVKFTEQGEVLLRVLPHRAADSEVELLFEVRD 1002 Query: 423 TGIGIDPDRLDDIFEPFAQIDSFMSRSHEGTGLGLAISRRIVDMMGGEIYAESDGKHGSS 482 TGIGID L +F+PF Q D+ +R + GTGLGL IS+ +V++MGG I+AES GS+ Sbjct: 1003 TGIGIDSAHLGKLFQPFTQADASTTRRYGGTGLGLTISKTLVELMGGTIWAESQPGVGST 1062 Query: 483 FTFTIQFKEASQIPREHFFEEMLHNTGKVNILLAEDNAINQLVMTKMLEKLGHRVTTVPN 542 F FT +FK A+ E + L +++L+ +D A ++ ++ LE R + Sbjct: 1063 FRFTARFKVAAM---ERSPTQQLVLPPDLHVLVVDDQAAHRQILRSYLESWHMRCEEAAD 1119 Query: 543 GKKAIEAARNQSFDLIFMDLHMPFLNGLKASQIIKEELKDKCP--RIIAVTANALKGDRE 600 G +AIE A+ + FDL +DL +P +G +Q +L+ P +++ +TA+ +G E Sbjct: 1120 GAQAIEKAQREHFDLAILDLLLPDTDGFDLAQ----QLRRLSPSMKLVLLTAHHEQGQGE 1175 Query: 601 KCLEAGMDDYISKPVKRETLIKIL 624 + ++AG Y+ KP+++ L+ +L Sbjct: 1176 RAVDAGFSAYLLKPIRQSQLMDVL 1199 Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 60/117 (51%), Positives = 81/117 (69%), Gaps = 6/117 (5%) Query: 513 ILLAEDNAINQLVMTKMLEKLGHRVTTVPNGKKAIE--AARNQSFDLIFMDLHMPFLNGL 570 ILLAEDN +N+ + T LEKLG+ V TV NG++A+E A R Q + L+ MD MP ++G Sbjct: 1234 ILLAEDNPVNRRLATLQLEKLGYSVRTVDNGREAVEEMARRGQEYCLVLMDCQMPEMDGY 1293 Query: 571 KASQIIKEELKDKCPR---IIAVTANALKGDREKCLEAGMDDYISKPVKRETLIKIL 624 +A++ I+ L+ K R IIA+TANAL+GDRE CL AGMDDY+SKP+ L +L Sbjct: 1294 EATRQIRR-LETKSGRRTPIIALTANALEGDREACLAAGMDDYLSKPLTMGKLKAVL 1349 Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 72/255 (28%), Positives = 124/255 (48%), Gaps = 27/255 (10%) Query: 13 QQIYDHASFGIALVSPDGLILTVNPAMEQMLGYTRAEFDGRRVGD-----FSHPDEAVRD 67 Q I++ S GI S DG +L NPA+ +MLGY E V D ++ P + R Sbjct: 458 QDIFERISEGIFQTSLDGRLLLANPALARMLGYASPEELLSEVQDVARQIYARPADRDRY 517 Query: 68 IGSLVAGMEIGSNEIQLERRYLKKNGENMWGLLSFKRFHDEAGQLVYYIGQLIDITRQKE 127 + ++ E+ E++ ++K+GE++W +S + DEA + G DIT++K Sbjct: 518 LRIMLEEGEVRDFELE----AVRKDGEHIWLSISSRWLLDEARGMRIIEGTCQDITQRKR 573 Query: 128 SERRLQESVERYNSLKKYNHDAVISFGL---DGRIINANNMAEKLTGYHIETELIGAELA 184 +E L+ES+E + S ++H A I L DGR + N ++ GY E EL+G Sbjct: 574 AEEALRESMELFVS--AFDH-APIGMALVATDGRWLRVNPSLCRMLGYS-ERELLGMTFQ 629 Query: 185 KL-------IGQANVGRILEKAIYDDSVEHDIDILVTKEGSTVEVLTSIAPIY-VSGQNI 236 + + +V ++L+ I +E K GS V L S++ + + GQ + Sbjct: 630 DITHPDDLELDLQHVRQVLDGEIAQYEMEKRY---YHKHGSIVWALLSVSLVRDLDGQPL 686 Query: 237 GFYLICKDISEQKQL 251 F +DI+++K++ Sbjct: 687 YFVSQIQDITQRKEI 701 >Q74AN8.1 Q74AN8_GEOSL Sensor protein EC=2.7.13.3 Length = 982 Score = 316 bits (809), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 222/633 (35%), Positives = 344/633 (54%), Gaps = 66/633 (10%) Query: 30 GLILTVNPAMEQMLGYTRAEFDGRRV-GDFSHPDEAVRDIGSLVAGMEIGSNEIQLERRY 88 G++ +N ++ GY R E +G V HPD DIGS++ M +E + R Sbjct: 237 GIVQDMNARFAKLFGYPREELEGINVISLLFHPD----DIGSMIDKMSRAHSE-PYQVRG 291 Query: 89 LKKNGENMWGLLSFKRFHDEAGQLVYYIGQLIDITRQKESERRLQESVERYNSLKKYNHD 148 +KK+G + + ++ + G + + DIT ++ +E L++S + +L + H Sbjct: 292 VKKDGTVF--DVEIEGYNLQHGDKSVRVVSVRDITERRRAEEALRQSEALFRNL--FEHH 347 Query: 149 AVISFGLD---GRIINANNMAEKLTGYHIET---------ELIGAE--LAKLIGQANVGR 194 A + +D G I++ANN A G+ E ++ E +++L N+ R Sbjct: 348 AAVKLIIDPVSGAIVDANNAAVSFYGWSREQLRAMNIRDINMLSPEELVSELENTKNMER 407 Query: 195 I---LEKAIYDDSVEHDIDILVTKEGSTVEVLTSIAPIYVSGQNIGFYLICKDISEQK-- 249 I DDSV D+++ ++ I V G+ + I D++E+K Sbjct: 408 IHFFFRHRRADDSV-RDVEVFSSR-------------IEVKGREY-LHSIVHDVTERKRA 452 Query: 250 --QLLLXXXXXXXXXXXXSEFLAMMSHEIRTPMNGVVGMTDVLLDMTDLTKEQRSYVEVI 307 +LLL SEFLA MSHEIRTPMNGV+GMT +LL+ T L EQR Y E++ Sbjct: 453 EEELLLAKEQAESANRAKSEFLANMSHEIRTPMNGVIGMTGLLLE-TGLADEQRRYAEIV 511 Query: 308 QKSGXXXXXXXXXXXXXSKIEAGRSELQEHNFDLRKCIKDSFSVVSKKADEKKIELSYTV 367 + S SKIEAGR E++ FDLR + D ++ KA+EK + + + Sbjct: 512 RTSAASLLQVIDDILDFSKIEAGRLEMETIGFDLRTLLDDLAESLAFKANEKGLTFTCLL 571 Query: 368 NHDVPDYIYGDAERLKQVLLNLLGNAVKFTSKGSIAVKVRLLKE--EACRLAFTVTDTGI 425 +VP ++ GD RLKQVL+NL GNA+KFT +G I+V+V L + ++ +L F V DTGI Sbjct: 572 RPEVPRFLMGDPVRLKQVLVNLAGNALKFTHQGEISVEVGSLTKTGDSVKLRFAVRDTGI 631 Query: 426 GIDPDRLDDIFEPFAQIDSFMSRSHEGTGLGLAISRRIVDMMGGEIYAESDGKHGSSFTF 485 GI P++ + +FE F Q D+ ++R + GTGLGLAI +R+V MMGGEI S GS F F Sbjct: 632 GIPPEKTELLFEKFTQADASITRKYGGTGLGLAICKRLVQMMGGEIGVTSRPGVGSEFWF 691 Query: 486 TIQFKEASQIPREHFFE--------EMLHNTGK--VNILLAEDNAINQLVMTKMLEKLGH 535 T F +Q R+ E ++L + G V ILL EDNA N+ V ++++LG Sbjct: 692 TASF--GTQNLRDSSPEPDGGDGPLQLLSDLGHDDVRILLVEDNATNRQVALGIIKRLGL 749 Query: 536 RVTTVPNGKKAIEAARNQSFDLIFMDLHMPFLNGLKASQIIKE----ELKDKCPRIIAVT 591 R NG +A++ +DL+ MD+ MP ++G +A++ I++ L + P +IA+T Sbjct: 750 RGDAAANGAEALDLLATTPYDLVLMDVQMPVMDGFEATRHIRDVRSPVLNHEIP-VIALT 808 Query: 592 ANALKGDREKCLEAGMDDYISKPVKRETLIKIL 624 A+A+KGDR KCL+AGM+DY++KP+ + L ++L Sbjct: 809 AHAMKGDRRKCLDAGMNDYLAKPIFPDALAEML 841 >B3KDJ6.1 B3KDJ6_9BACI Sensor protein EC=2.7.13.3 Length = 559 Score = 315 bits (807), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 164/377 (43%), Positives = 249/377 (66%), Gaps = 10/377 (2%) Query: 249 KQLLLXXXXXXXXXXXXSEFLAMMSHEIRTPMNGVVGMTDVLLDMTDLTKEQRSYVEVIQ 308 ++L+L +EFLAMMSHEIRTPMNGV+GM D+L+D ++L EQR Y +I+ Sbjct: 153 QELVLAKEEAEIAAKAKTEFLAMMSHEIRTPMNGVIGMIDLLMD-SELQDEQREYATIIR 211 Query: 309 KSGXXXXXXXXXXXXXSKIEAGRSELQEHNFDLRKCIKDSFSVVSKKADEKKIELSYTVN 368 S SK+E+G+ EL+E+ FDL+ C+++ F + S +A +K +EL+Y + Sbjct: 212 NSADALVNIINDILDFSKMESGKMELEEYPFDLKSCVQEVFGLFSGEASKKNLELTYYIE 271 Query: 369 HDVPDYIYGDAERLKQVLLNLLGNAVKFTSKGSIAVKVRLLKEEACRLA--FTVTDTGIG 426 +P ++GD RL+QVL+NL+ NAVKFT++G + + V L K E RL FTV DTGIG Sbjct: 272 DQIPSMVFGDMGRLRQVLVNLVSNAVKFTNEGGVYLVVSLAKAEENRLTLEFTVKDTGIG 331 Query: 427 IDPDRLDDIFEPFAQIDSFMSRSHEGTGLGLAISRRIVDMMGGEIYAESDGKHGSSFTFT 486 I +LD +F+PF+Q+DS M+R + GTGLGLAI + +V MMGGEI +S G++F FT Sbjct: 332 ISSKKLDRLFKPFSQLDSSMTRRYGGTGLGLAICKSLVQMMGGEIEVDSKEGEGATFVFT 391 Query: 487 IQF-KEASQIPR----EHFFEEMLHNTGKVNILLAEDNAINQLVMTKMLEKLGHRVTTVP 541 I + PR EH + +H + NIL+ +D+ IN+ +M MLEK+G Sbjct: 392 ICVHTHEEEHPRLREEEHSDKYRVHGGRQPNILIVDDHPINRKLMESMLEKMGMIADMAE 451 Query: 542 NGKKAIE-AARNQSFDLIFMDLHMPFLNGLKASQIIKE-ELKDKCPRIIAVTANALKGDR 599 +G++A+E AA +++D+IFMDL MP ++GL+A+++I++ + + P +IA+TAN + G + Sbjct: 452 DGRQAVEMAAGPKAYDMIFMDLQMPVMDGLEAARLIRQMKPEADAPVLIAMTANVMDGIQ 511 Query: 600 EKCLEAGMDDYISKPVK 616 ++C +AGM++YISKPVK Sbjct: 512 KRCFDAGMNEYISKPVK 528 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.136 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,373,410,573 Number of extensions: 135791554 Number of successful extensions: 566091 Number of sequences better than 1.0e-05: 30856 Number of HSP's gapped: 528266 Number of HSP's successfully gapped: 34125 Length of query: 629 Length of database: 3,060,696,203 Length adjustment: 142 Effective length of query: 487 Effective length of database: 1,722,912,073 Effective search space: 839058179551 Effective search space used: 839058179551 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)