BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0037.p (441 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DLL4.1 B1DLL4_9BACL S-layer domain protein 88 1e-15 B6FR26.1 B6FR26_9CLOT Putative uncharacterized protein 79 1e-12 Q24QP9.1 Q24QP9_DESHY Putative uncharacterized protein 75 1e-11 C0E8V4.1 C0E8V4_9CLOT Putative uncharacterized protein 72 1e-10 C1UAF2.1 C1UAF2_9ACTN Putative uncharacterized protein 64 4e-08 >B1DLL4.1 B1DLL4_9BACL S-layer domain protein Length = 1517 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 110/227 (48%), Gaps = 18/227 (7%) Query: 21 GFAKNGASLPKGYLEQ----TADKILAQRGKF--AKVTDLTRTALAYSAAGGSINNIAGI 74 G A++G +P Y + + + GK K T+ R LA +A G I+N+AG Sbjct: 1241 GLARSGMPVPDSYFAKYYSNVEQAVKEKEGKLHSVKYTEYDRVILALTAIGRDIHNVAGY 1300 Query: 75 DLYPFLMNHSGIDTEGXXXXXXXYVTSDNS-YSESLE---RTNRYPDMLFYQLLKMQLAD 130 DL L ++ + +G + D+ YS + +T ++L +L ++A Sbjct: 1301 DLTKPLADYETVIKQGINGPIFALIALDSKGYSIPADPSVKTQTTKELLIDFILNREIAG 1360 Query: 131 GSWPLAGQ-TQGDPSATAWVLTALAPQLGSEQTA-GPVQSALLWLKGKQQPDGGFDG--- 185 G W L + T+ DP TA VL ALAP + T V+ ++ WL QQ DGG+ Sbjct: 1361 GGWALGEKPTEADPDITAMVLQALAPYYNANPTVKAAVERSITWLSKAQQADGGYASGGA 1420 Query: 186 -KTTTTAQVVVALSSLGIDAADFA--AEGGTSVLDHLLSRKLPDGGF 229 + ++AQVVVAL++LGID + + G +VLD LL GGF Sbjct: 1421 VNSESSAQVVVALTALGIDPQTDSRFVKNGRNVLDALLGYSASGGGF 1467 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/261 (25%), Positives = 102/261 (39%), Gaps = 22/261 (8%) Query: 22 FAKNGASLPKGYLEQTADKILAQRGKFAKV------TDLTRTALAYSAAGGSINNIAGID 75 A+ +P GY + +K++A V T+ +R LA ++ G + N+ G + Sbjct: 372 LARGNYQVPDGYYDTYYNKVVAAVQDKQNVLDPNKYTEHSRVILALTSIGKDVTNVGGFN 431 Query: 76 LYPFLMNHSGIDTEGXXXXXXXYVTSDN---------SYSESLERTNRYPDMLFYQLLKM 126 L + + + +G + D+ + + R N M+ ++ K Sbjct: 432 QLEKLADFNKVIAQGINGPTFALLALDSHNYDIPAVAAVAVQSTRANLIQYMVDMEIKKG 491 Query: 127 QLADGSWPLAGQTQGDPSATAWVLTALAPQLGSE-QTAGPVQSALLWL-KGKQQPDGGFD 184 G W D TA L ALAP S A+ WL K + DGG+ Sbjct: 492 TENAGGWGFGSFV--DVDLTAMALQALAPYYNSNPDVKSAADRAVAWLSKSQSSVDGGY- 548 Query: 185 GKTTTTAQVVVALSSLGIDAAD--FAAEGGTSVLDHLLSRKLPDGGFXXXXXXXXXXXXX 242 + + AQV+VALS+LGID+ + G S++D L LPDGGF Sbjct: 549 SSSESIAQVIVALSALGIDSNSDPRFVKNGHSLIDAFLLYALPDGGFRHTKTGGVNGLAT 608 Query: 243 XXXXXXLTSYKLLSKQAGLLY 263 L +Y KQ LY Sbjct: 609 DQGTYALVAYDRFLKQKKSLY 629 >B6FR26.1 B6FR26_9CLOT Putative uncharacterized protein Length = 887 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 70/201 (34%), Positives = 101/201 (50%), Gaps = 27/201 (13%) Query: 50 KVTDLTRTALAYSAAGGSINNIAGID-LYPFLMNHSGIDTEGXXXXXXXYVTSDNSYSE- 107 K T+ +R LA +A G +++ G + LYP L N ++ +G + D+ E Sbjct: 139 KYTEYSRVVLALTAIGVDPSDVNGYNMLYP-LANFKQVNWQGVNGTIYALLALDSKNYEI 197 Query: 108 ----------SLERTNRYPDMLFYQLLKMQLADGSWPLAGQTQGDPSATAWVLTALAPQL 157 LE+T R + L Q+L QL+DG W L+G T+ DP TA + ALAP Sbjct: 198 PKLTEEDLGKGLEQTTR--EKLIQQILDKQLSDGGWALSG-TKSDPDMTAMAIQALAPYY 254 Query: 158 GSEQTAG---PVQSALLWLKGKQQPDGGFDGKTT----TTAQVVVALSSLGIDAADFAA- 209 E+ +G V+ AL L Q +GGF T + AQ V+ALS+L ++ A Sbjct: 255 --EKNSGVETAVEKALQTLSTMQDENGGFASFGTENLESAAQTVIALSTLNVELLSDEAF 312 Query: 210 -EGGTSVLDHLLSRKLPDGGF 229 + G SVLD+LLS +L DG F Sbjct: 313 IKNGKSVLDYLLSYQLSDGAF 333 >Q24QP9.1 Q24QP9_DESHY Putative uncharacterized protein Length = 650 Score = 75.1 bits (183), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 69/190 (36%), Positives = 88/190 (46%), Gaps = 12/190 (6%) Query: 50 KVTDLTRTALAYSAAGGSINNIAGIDLYPFLMNHSGIDTEGXXXXXXXYVTSDN-SYSES 108 KVTDL R ALA AA G N AG DL + N I +G + D+ +Y + Sbjct: 118 KVTDLERIALAIGAAQGDPRNFAGKDLIAEIYNFPNIQAQGLNGPIFALLALDSGNYLVA 177 Query: 109 LERTNRYPDMLFYQLLKMQLADGSWPLAGQTQGDPSATAWVLTALAP--QLGSEQTAGPV 166 E D+L +L QL DG + L DP TA L ALAP + G + V Sbjct: 178 AEAKWSREDLLAI-ILSKQLPDGGFNLRSTGSSDPDITAMALQALAPYYREGRAEVRTVV 236 Query: 167 QSALLWLKGKQQPDGGF----DGKTTTTAQVVVALSSLGIDA---ADFAAEGGTSVLDHL 219 AL L Q DG + D + +TAQV++AL SLGID F G T + +L Sbjct: 237 DEALATLSKLQDQDGHYISWGDVNSESTAQVIIALCSLGIDPDTDPRFIKNGRTLPV-NL 295 Query: 220 LSRKLPDGGF 229 L + DGGF Sbjct: 296 LQFRAEDGGF 305 >C0E8V4.1 C0E8V4_9CLOT Putative uncharacterized protein Length = 552 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 95/194 (48%), Gaps = 5/194 (2%) Query: 41 ILAQRGKFAKVTDLTRTALAYSAAGGSINNIAGIDLYPFLMNHSGIDTEGXXXXXXXYVT 100 ILAQ+G++ T L++ L+ +G + + G +L L N + ++ + Sbjct: 261 ILAQKGQYTSATKLSQDILSLIFSGLNPEDFEGYNLLQELYNFPDLTSQRLYAVSYALMV 320 Query: 101 SDNSYSESLERTNRYPDMLFYQLLKMQLADGSWPLAGQTQGDPSATAWVLTALAPQLGSE 160 D++ E + N + L LL Q DG + L+ + + + S TA + AL+ L + Sbjct: 321 YDSNAYEIPVKANNSREKLVDSLLTYQNQDGGFALSPRQESEISTTATAVIALSNYLDQD 380 Query: 161 QTAGPVQSALLWLKGKQQPDGGF----DGKTTTTAQVVVALSSLGIDAADFA-AEGGTSV 215 V+ AL +L+ Q DG F + + + V+VALSSLGI A D + G + Sbjct: 381 NVKSSVRGALSFLQEHQNDDGSFSISGEPNSQELSTVIVALSSLGISAEDERFVKNGVNT 440 Query: 216 LDHLLSRKLPDGGF 229 ++ LL+ +L DGGF Sbjct: 441 VNSLLTFQLADGGF 454 >C1UAF2.1 C1UAF2_9ACTN Putative uncharacterized protein Length = 683 Score = 63.5 bits (153), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/173 (35%), Positives = 77/173 (44%), Gaps = 15/173 (8%) Query: 119 LFYQLLKMQLADGSWPLAGQTQGD-PSATAWVLTALAPQLGSEQTAGPVQSALLWLKGKQ 177 L +LL Q A G W G +GD P TA V+TALA ++ V L L+ Q Sbjct: 452 LVAKLLSAQQASGGWTWKGAAEGDDPDTTAMVITALASRVSDASVKAAVDKGLEALRAMQ 511 Query: 178 QPDGGF-------DG--KTTTTAQVVVALSSLGID-AADFAAEGGTSVLDHLLSRKLPD- 226 DGGF DG ++T+ VVVAL +LG D AA E G + L LLS+ D Sbjct: 512 HEDGGFRASGDAADGPINVSSTSCVVVALCALGADPAASMVTESGATPLSALLSQATSDL 571 Query: 227 GGFXXXXXXXXXXXXXXXXXXXLTSYKLLSKQAGLLYSGLHQADKGQAAIYIE 279 GF L +Y+ L K G Y+ QA GQAA+ E Sbjct: 572 SGF--VYNGAANDLATEQGFRALVAYQGL-KNTGAAYNVYTQAKLGQAALPAE 621 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.314 0.133 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,527,033,054 Number of extensions: 103416673 Number of successful extensions: 166462 Number of sequences better than 1.0e-05: 23 Number of HSP's gapped: 166475 Number of HSP's successfully gapped: 24 Length of query: 441 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 302 Effective length of database: 1,751,175,118 Effective search space: 528854885636 Effective search space used: 528854885636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 133 (55.8 bits)