BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0035.p (157 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D6A9.1 B1D6A9_9BACL Peptide methionine sulfoxide reductase EC=... 257 2e-67 C5D629.1 C5D629_9BACI Peptide methionine sulfoxide reductase 256 3e-67 B7GGW6.1 B7GGW6_ANOFW Peptide methionine sulfoxide reductase 254 2e-66 C4L2M1.1 C4L2M1_EXISA Peptide methionine sulfoxide reductase EC=... 251 2e-65 C3IXV2.1 C3IXV2_9BACI Peptide methionine sulfoxide reductase EC=... 249 4e-65 >B1D6A9.1 B1D6A9_9BACL Peptide methionine sulfoxide reductase EC=1.8.4.11 Length = 173 Score = 257 bits (657), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 120/157 (76%), Positives = 136/157 (86%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MVTPFEELPGIHGIVSGY GG + NPTYE+VK GTTGH EVVQIT++PAVFPY RLLELF Sbjct: 16 MVTPFEELPGIHGIVSGYMGGHLANPTYEEVKKGTTGHLEVVQITFDPAVFPYERLLELF 75 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 WPQIDPTDD GQFQDRG+QYRTA+FYYNEEQ+ ALAS++++A S RF+ P+ TEI A Sbjct: 76 WPQIDPTDDEGQFQDRGSQYRTAIFYYNEEQKELALASKQELALSERFDKPIATEIREAE 135 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 FY AE+YHQDYHKKNPKHYKEDR QSGRD FI ++W Sbjct: 136 TFYPAEDYHQDYHKKNPKHYKEDRAQSGRDEFIEQNW 172 >C5D629.1 C5D629_9BACI Peptide methionine sulfoxide reductase Length = 175 Score = 256 bits (655), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 121/157 (77%), Positives = 134/157 (85%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MVTPFEEL GI+GIVSGY GG VENPTYEQVKTGTTGHYE VQIT++P VFPY RLLEL+ Sbjct: 14 MVTPFEELDGIYGIVSGYTGGHVENPTYEQVKTGTTGHYEAVQITFDPNVFPYERLLELY 73 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 W QIDPTDDGGQF DRG QYRTA+FY+NEEQR A AS+ + SG+F P+VT+ILPA Sbjct: 74 WCQIDPTDDGGQFHDRGPQYRTAIFYHNEEQRQKAEASKRALEESGKFSKPIVTKILPAT 133 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 +FY AEEYHQ+YHKKNPKHYKEDR SGRD FIAKHW Sbjct: 134 KFYPAEEYHQNYHKKNPKHYKEDRAASGRDEFIAKHW 170 >B7GGW6.1 B7GGW6_ANOFW Peptide methionine sulfoxide reductase Length = 186 Score = 254 bits (649), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 119/157 (75%), Positives = 133/157 (84%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MVTPFEEL GI+GIVSGY GG VENPTYEQVKTGTTGHYE VQIT++P VFPY +LLEL+ Sbjct: 26 MVTPFEELDGIYGIVSGYTGGHVENPTYEQVKTGTTGHYEAVQITFDPDVFPYEKLLELY 85 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 W QIDPTDDGGQF DRG QYRTA+FY+NE Q+ A S++Q+ SGRF P+VTEILPA Sbjct: 86 WCQIDPTDDGGQFHDRGPQYRTAIFYHNERQKTLAEQSKKQLEESGRFSKPIVTEILPAT 145 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 FY AE+YHQ+YHKKNPKHYKEDR SGRD FIAKHW Sbjct: 146 TFYPAEDYHQNYHKKNPKHYKEDRAASGRDEFIAKHW 182 >C4L2M1.1 C4L2M1_EXISA Peptide methionine sulfoxide reductase EC=1.8.4.11 Length = 174 Score = 251 bits (641), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 118/157 (75%), Positives = 134/157 (85%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MVTPFEELPGI GIVSGY GG V+NPTYEQVKTGTTGH EVVQITY+PA+F Y RLLEL+ Sbjct: 14 MVTPFEELPGIEGIVSGYMGGQVDNPTYEQVKTGTTGHLEVVQITYDPALFSYERLLELY 73 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 W Q DPTDDGGQFQDRG QY A+FY+ EEQR+AA ASR+ +AASGRF P+VT+I+PA Sbjct: 74 WIQTDPTDDGGQFQDRGPQYAPAIFYHTEEQRVAADASRDVLAASGRFTAPIVTKIIPAT 133 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 F+ AE+YHQDYHKKNPKHYKEDR SGRD FI ++W Sbjct: 134 TFFAAEDYHQDYHKKNPKHYKEDRAISGRDEFIEENW 170 >C3IXV2.1 C3IXV2_9BACI Peptide methionine sulfoxide reductase EC=1.8.4.11 Length = 174 Score = 249 bits (637), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 118/157 (75%), Positives = 132/157 (84%) Query: 1 MVTPFEELPGIHGIVSGYAGGTVENPTYEQVKTGTTGHYEVVQITYNPAVFPYSRLLELF 60 MVTPFEEL GI+GIVSGY GG VENPTYEQVKTGTTGHYE VQIT++P VFPY RLLEL+ Sbjct: 14 MVTPFEELDGIYGIVSGYTGGHVENPTYEQVKTGTTGHYEAVQITFDPDVFPYERLLELY 73 Query: 61 WPQIDPTDDGGQFQDRGAQYRTAVFYYNEEQRLAALASREQVAASGRFEGPVVTEILPAP 120 W QIDPTDDGGQF DRG QYRTA+FY+NE+QR A S+ + SGRF P+VT+ILPA Sbjct: 74 WCQIDPTDDGGQFHDRGPQYRTAIFYHNEKQRQLAEQSKRALEESGRFSKPIVTKILPAT 133 Query: 121 RFYRAEEYHQDYHKKNPKHYKEDREQSGRDTFIAKHW 157 FY AEEYHQ+YHKKNP+HYK+DR SGRD FIAKHW Sbjct: 134 TFYPAEEYHQNYHKKNPEHYKQDRAASGRDEFIAKHW 170 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,067,529,686 Number of extensions: 43725228 Number of successful extensions: 104440 Number of sequences better than 1.0e-05: 2220 Number of HSP's gapped: 102558 Number of HSP's successfully gapped: 2220 Length of query: 157 Length of database: 3,060,696,203 Length adjustment: 118 Effective length of query: 39 Effective length of database: 1,949,016,433 Effective search space: 76011640887 Effective search space used: 76011640887 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 125 (52.8 bits)