BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0033.p (158 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B8HC64.1 B8HC64_ARTCA Oxidoreductase domain protein 127 2e-28 A4QGU9.1 A4QGU9_CORGB Putative uncharacterized protein 122 1e-26 C4C724.1 C4C724_9FUSO Predicted dehydrogenase 108 2e-22 B6F7Z8.1 B6F7Z8_9ENTR Putative uncharacterized protein 104 2e-21 A8U725.1 A8U725_9LACT Putative lipopolysaccharide biosynthesis p... 103 6e-21 >B8HC64.1 B8HC64_ARTCA Oxidoreductase domain protein Length = 335 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 89/151 (58%), Gaps = 1/151 (0%) Query: 1 VLINQTIHTLDLLQWFGGEIASVTGSVTTDVLNEVIEVEDTAHACIIFKNNVRGLFYGTN 60 +++NQ IHT+DLLQW G++A V G + L +IEVEDTA N R +FY T Sbjct: 175 LMMNQAIHTVDLLQWLVGDVAKVEGHASVRALAGIIEVEDTAEFAAEHANGARSVFYATL 234 Query: 61 AYCVNSPVEMEFVFEQGTLLLRRDCLYLWKDGHETLLTEPVSTAGEGKSYWGTSHQRLIL 120 VN+PV ++ E+ L LR D + DG +++EPV +G +SYWG SH+ LI Sbjct: 235 GNAVNAPVTLDITTEKALLSLRGDLTVTYGDGAVEVVSEPVPESGR-RSYWGASHELLIR 293 Query: 121 DFYKHVREGRKFWIDAGEGIKALEVIAGIYS 151 DFY + E FWI+ E K+L+V+ IY+ Sbjct: 294 DFYAKLEEPGPFWINPAEAGKSLQVVKDIYA 324 >A4QGU9.1 A4QGU9_CORGB Putative uncharacterized protein Length = 344 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 66/156 (42%), Positives = 91/156 (58%), Gaps = 1/156 (0%) Query: 1 VLINQTIHTLDLLQWFGGEIASVTGSVTTDVLNEVIEVEDTAHACIIFKNNVRGLFYGTN 60 +L+NQ IHTLDLLQWF GE V G+V+TD +VI+VEDTAHA I ++ V FYGT Sbjct: 189 LLMNQAIHTLDLLQWFLGEATEVKGTVSTDKYADVIDVEDTAHAYIRHESGVHTSFYGTL 248 Query: 61 AYCVNSPVEMEFVFEQGTLLLRRDCLYLWKDGHETLLTEPVSTAGEGKSYWGTSHQRLIL 120 + VE+E E + LR + W DG E + EG+SYWG SH+ LI Sbjct: 249 TNSRHRHVEIELDCENALVELRDGLVVNWTDGRVERFEER-NQESEGRSYWGVSHELLIR 307 Query: 121 DFYKHVREGRKFWIDAGEGIKALEVIAGIYSTAVNS 156 DFY+ + + FWI E + +L++ IYS++ + Sbjct: 308 DFYEKLGDQEPFWIGPREAMSSLDIAKSIYSSSAET 343 >C4C724.1 C4C724_9FUSO Predicted dehydrogenase Length = 334 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 90/151 (59%), Gaps = 1/151 (0%) Query: 1 VLINQTIHTLDLLQWFGGEIASVTGSVTTDVLNEVIEVEDTAHACIIFKNNVRGLFYGTN 60 VLINQ IHTLDL+ WF G+I + GSV IEVEDT A +IF+N +G+FY TN Sbjct: 177 VLINQAIHTLDLMLWFAGDIKILNGSVHKHRTTNEIEVEDTVEAYMIFENGAKGVFYATN 236 Query: 61 AYCVNSPVEMEFVFEQGTLLLRRDCLYLWKDGHETLLTEPVSTAGE-GKSYWGTSHQRLI 119 Y +S E+E E+G L ++ + L L+ + E LL E T E K +G SH+ LI Sbjct: 237 NYSYDSGAELEVHCEKGILNIKNNKLRLFLEDDEVLLEEESFTKNEFNKKCYGNSHEILI 296 Query: 120 LDFYKHVREGRKFWIDAGEGIKALEVIAGIY 150 +FY+ + +I+ EGIKAL++I IY Sbjct: 297 KNFYESILNKTDNYINIKEGIKALKIIEKIY 327 >B6F7Z8.1 B6F7Z8_9ENTR Putative uncharacterized protein Length = 340 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/123 (43%), Positives = 69/123 (56%) Query: 1 VLINQTIHTLDLLQWFGGEIASVTGSVTTDVLNEVIEVEDTAHACIIFKNNVRGLFYGTN 60 +LINQ IHTLDL+QWF G + + G V + L +V E ED+A A + F N RGLFY +N Sbjct: 177 LLINQAIHTLDLMQWFAGGVTRLKGVVDSGELADVTEGEDSAMATLHFANGARGLFYASN 236 Query: 61 AYCVNSPVEMEFVFEQGTLLLRRDCLYLWKDGHETLLTEPVSTAGEGKSYWGTSHQRLIL 120 +SP+ +E E GTL L + L+ G L + G KSYWG HQ+ I Sbjct: 237 CNTTDSPLLLEIHCEHGTLQLNDNTLWRIASGERIRLASDAAPDGTAKSYWGLGHQQAIR 296 Query: 121 DFY 123 FY Sbjct: 297 RFY 299 >A8U725.1 A8U725_9LACT Putative lipopolysaccharide biosynthesis protein Length = 343 Score = 103 bits (256), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 57/158 (36%), Positives = 93/158 (58%), Gaps = 3/158 (1%) Query: 2 LINQTIHTLDLLQWFGGEIASVTGSVTTDVLNEVIEVEDTAHACIIFKNNVRGLFYGTNA 61 +INQ+IHTLDL+Q GGE+ S S++ ++ + IEVEDTA A F+ V+ F+GTNA Sbjct: 173 IINQSIHTLDLIQLIGGELKSCKASLS-NLTDYAIEVEDTASATFTFQTGVKAFFHGTNA 231 Query: 62 YCVNSPVEMEFVFEQGTLLLRRDCLYLW-KDGHETLLTEPVSTAGEGKSYWGTSHQRLIL 120 Y NS VE++ + E+ ++ LY ++G + ++ E G K Y+G H+ L+ Sbjct: 232 YTENSSVELQVITEKEKFTIKDSRLYFTNENGRKEVIVEDDRIPG-SKFYYGMGHRILVE 290 Query: 121 DFYKHVREGRKFWIDAGEGIKALEVIAGIYSTAVNSSN 158 FYK + E + ++ E I A+E+I + ++ N+ N Sbjct: 291 RFYKSIIENTEDYVHVREAIPAMEMIEMMDRSSKNTGN 328 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 977,540,738 Number of extensions: 39706072 Number of successful extensions: 81056 Number of sequences better than 1.0e-05: 75 Number of HSP's gapped: 81044 Number of HSP's successfully gapped: 75 Length of query: 158 Length of database: 3,060,696,203 Length adjustment: 119 Effective length of query: 39 Effective length of database: 1,939,595,418 Effective search space: 75644221302 Effective search space used: 75644221302 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)