BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0029.p
         (59 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B9MMV4.1 B9MMV4_ANATD Xylose isomerase domain protein TIM barrel       59   1e-07
A4XH41.1 A4XH41_CALS8 Xylose isomerase domain protein TIM barrel       56   1e-06
C0A747.1 C0A747_9BACT Xylose isomerase domain-containing protein       54   3e-06

>B9MMV4.1 B9MMV4_ANATD Xylose isomerase domain protein TIM barrel
          Length = 255

 Score = 58.9 bits (141), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 38/53 (71%)

Query: 1  MKTSTIAAQMYTLREFTQTPEGLRESFLKVKDIGYQAVQVSGIGPIDPQLVKQ 53
          M    IAAQ+YT+REF +T E +  S  K+ +IG++A+Q+SGIG I P+ +K+
Sbjct: 1  MNKDKIAAQLYTVREFFKTEEEIYHSLKKISEIGFKAIQISGIGKIHPKRLKE 53


>A4XH41.1 A4XH41_CALS8 Xylose isomerase domain protein TIM barrel
          Length = 255

 Score = 55.8 bits (133), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 34/47 (72%)

Query: 1  MKTSTIAAQMYTLREFTQTPEGLRESFLKVKDIGYQAVQVSGIGPID 47
          MK   IAAQ+YTLREF +T E +  +  KV +IG++AVQ+SG+  ID
Sbjct: 1  MKQEQIAAQLYTLREFLKTEEDIYNTLKKVSEIGFRAVQISGMAKID 47


>C0A747.1 C0A747_9BACT Xylose isomerase domain-containing protein
          Length = 259

 Score = 54.3 bits (129), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 36/53 (67%)

Query: 1  MKTSTIAAQMYTLREFTQTPEGLRESFLKVKDIGYQAVQVSGIGPIDPQLVKQ 53
          MK S +A Q+YTLRE  +T   L E+  KV+ IGY+AVQ SG+GPI  + + +
Sbjct: 1  MKISQVAIQLYTLREHCKTAADLAETCKKVRAIGYEAVQASGVGPIPEEQIAK 53


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.133    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 277,758,961
Number of extensions: 7112309
Number of successful extensions: 17371
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 17372
Number of HSP's successfully gapped: 3
Length of query: 59
Length of database: 3,060,696,203
Length adjustment: 31
Effective length of query: 28
Effective length of database: 2,768,644,738
Effective search space: 77522052664
Effective search space used: 77522052664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)