BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0025.p (155 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DE37.1 B1DE37_9BACL Sensor protein EC=2.7.13.3 117 4e-25 B1IDH0.1 B1IDH0_CLOBK Sensor protein EC=2.7.13.3 112 1e-23 A7FR19.1 A7FR19_CLOB1 Sensor protein EC=2.7.13.3 112 1e-23 A5HYR0.1 A5HYR0_CLOBH Sensor protein EC=2.7.13.3 112 1e-23 B1Q5G6.1 B1Q5G6_CLOBO Sensor protein EC=2.7.13.3 112 1e-23 >B1DE37.1 B1DE37_9BACL Sensor protein EC=2.7.13.3 Length = 344 Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 88/143 (61%) Query: 3 EMLRQLLVEMEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPGVI 62 E++ Q+L E P+A+EN V + +L IDP+ + R +DNLL+NALK+S P I Sbjct: 199 ELVEQVLFEFIPIAEENHVFVRPHLNIHEAAVHIDPEQVARILDNLLMNALKYSKTPKDI 258 Query: 63 QVSLRLQKDTARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIARSI 122 V L + + + V N+G+ IT+EQ+ +LF+RFY+ H +S HI GAGLGL+IAR + Sbjct: 259 DVYLMSDETSVYLTVANEGEQITKEQEGKLFDRFYKKEHVESNAHIQVGAGLGLAIARQL 318 Query: 123 ANLHHGELECEHSGGHFTFQLSL 145 A G L ++ GH+ F L L Sbjct: 319 AEHQDGCLTLDYEDGHYAFTLKL 341 >B1IDH0.1 B1IDH0_CLOBK Sensor protein EC=2.7.13.3 Length = 504 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 95/146 (65%), Gaps = 2/146 (1%) Query: 1 LGEMLRQLLVEMEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPG 60 L E+L QL+ E+ P+ +EN+V + + +++EID D + R +NL++NA+++S+KPG Sbjct: 356 LAELLDQLIEELVPICEENKVSINKYAWDSEIVSEIDADKMVRVFENLIMNAIRYSIKPG 415 Query: 61 VIQVSLRLQKDTARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIAR 120 I+++L ++ + + + N + I+++ R+LF+RFYR S++ G+GLGL+IA+ Sbjct: 416 EIKINLYKERVFSMVSISNKSEEISKDNLRKLFDRFYRLDKSRTAS--TGGSGLGLAIAK 473 Query: 121 SIANLHHGELECEHSGGHFTFQLSLL 146 SI LH G + E+ G+ TF + L+ Sbjct: 474 SIVELHKGSIWAEYQKGYITFYIKLI 499 >A7FR19.1 A7FR19_CLOB1 Sensor protein EC=2.7.13.3 Length = 504 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 95/146 (65%), Gaps = 2/146 (1%) Query: 1 LGEMLRQLLVEMEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPG 60 L E+L QL+ E+ P+ +EN+V + + +++EID D + R +NL++NA+++S+KPG Sbjct: 356 LAELLDQLIEELVPICEENKVSINKYAWDSEIVSEIDADKMVRVFENLIMNAIRYSIKPG 415 Query: 61 VIQVSLRLQKDTARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIAR 120 I+++L ++ + + + N + I+++ R+LF+RFYR S++ G+GLGL+IA+ Sbjct: 416 EIKINLYKERVFSMVSISNKSEEISKDNLRKLFDRFYRLDKSRTAS--TGGSGLGLAIAK 473 Query: 121 SIANLHHGELECEHSGGHFTFQLSLL 146 SI LH G + E+ G+ TF + L+ Sbjct: 474 SIVELHKGSIWAEYQKGYITFYIKLI 499 >A5HYR0.1 A5HYR0_CLOBH Sensor protein EC=2.7.13.3 Length = 492 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 95/146 (65%), Gaps = 2/146 (1%) Query: 1 LGEMLRQLLVEMEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPG 60 L E+L QL+ E+ P+ +EN+V + + +++EID D + R +NL++NA+++S+KPG Sbjct: 344 LAELLDQLIEELVPICEENKVSINKYAWDSEIVSEIDADKMVRVFENLIMNAIRYSIKPG 403 Query: 61 VIQVSLRLQKDTARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIAR 120 I+++L ++ + + + N + I+++ R+LF+RFYR S++ G+GLGL+IA+ Sbjct: 404 EIKINLYKERVFSMVSISNKSEEISKDNLRKLFDRFYRLDKSRTAS--TGGSGLGLAIAK 461 Query: 121 SIANLHHGELECEHSGGHFTFQLSLL 146 SI LH G + E+ G+ TF + L+ Sbjct: 462 SIVELHKGSIWAEYQKGYITFYIKLI 487 >B1Q5G6.1 B1Q5G6_CLOBO Sensor protein EC=2.7.13.3 Length = 504 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 52/146 (35%), Positives = 95/146 (65%), Gaps = 2/146 (1%) Query: 1 LGEMLRQLLVEMEPLAKENQVQLEANLPTTPLLTEIDPDMIKRAIDNLLINALKFSLKPG 60 L E+L QL+ E+ P+ +EN+V + + +++EID D + R +NL++NA+++S+KPG Sbjct: 356 LAELLDQLIEELVPICEENKVSINKYAWDSEIVSEIDADKMVRVFENLIMNAIRYSIKPG 415 Query: 61 VIQVSLRLQKDTARICVENDGDPITEEQQRQLFERFYRAGHSQSLDHIPAGAGLGLSIAR 120 I+++L ++ + + + N + I+++ R+LF+RFYR S++ G+GLGL+IA+ Sbjct: 416 EIKINLYKERVFSMVSISNKSEEISKDNLRKLFDRFYRLDKSRTAS--TGGSGLGLAIAK 473 Query: 121 SIANLHHGELECEHSGGHFTFQLSLL 146 SI LH G + E+ G+ TF + L+ Sbjct: 474 SIVELHKGSIWAEYQKGYITFYIKLI 499 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 898,607,373 Number of extensions: 33797556 Number of successful extensions: 161393 Number of sequences better than 1.0e-05: 11625 Number of HSP's gapped: 160901 Number of HSP's successfully gapped: 11648 Length of query: 155 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 39 Effective length of database: 1,967,858,463 Effective search space: 76746480057 Effective search space used: 76746480057 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 126 (53.1 bits)