BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0017.p (130 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K7P4.1 B3K7P4_9BACI Histidine kinase internal region 141 2e-32 B3KB78.1 B3KB78_9BACI Histidine kinase internal region 137 2e-31 B1DDM2.1 B1DDM2_9BACL Integral membrane sensor signal transducti... 124 4e-27 B1DDD2.1 B1DDD2_9BACL Histidine kinase internal region 115 2e-24 B3KH16.1 B3KH16_9BACI Histidine kinase internal region 112 7e-24 >B3K7P4.1 B3K7P4_9BACI Histidine kinase internal region Length = 606 Score = 141 bits (356), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 65/128 (50%), Positives = 91/128 (71%), Gaps = 1/128 (0%) Query: 3 IQCIKYGERLSVYYDIDPEVLEYATVKLILQPLIENALEHAWFGTTLGIRLVVEKREAEI 62 IQ +KYG+R+ V +DID + Y T+KLILQP IEN L+HAW G + IR+ V K +I Sbjct: 468 IQKVKYGQRMEVTFDIDTNIWPYETIKLILQPFIENVLKHAWSGDRIHIRISVHKEGDDI 527 Query: 63 VFKVIDNGVGMNADTIRQILAP-EGPRIGYGIRNVDSRIKLHHGSGYGVTIASRSGIGTC 121 ++++ID+G+GM + I++I P + G GIRN+D R+KLH+GS YGV+I S+ GIGT Sbjct: 528 LYRIIDDGLGMKQERIQEIFDPRDNSHTGCGIRNIDQRVKLHYGSEYGVSIFSKVGIGTS 587 Query: 122 IQITIPCR 129 +QI IP R Sbjct: 588 VQIRIPAR 595 >B3KB78.1 B3KB78_9BACI Histidine kinase internal region Length = 578 Score = 137 bits (346), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/132 (54%), Positives = 87/132 (65%), Gaps = 7/132 (5%) Query: 1 VAIQCIKYGERLSVYYDIDPEVLEYATVKLILQPLIENALEHAWFGTTLGIRLVVEKREA 60 V IQ IKY +R+ V YD +PEV+ Y TVKLILQP IEN LEHAW G + IR+ E Sbjct: 436 VDIQKIKYDDRMQVTYDFEPEVVRYETVKLILQPFIENVLEHAWTGDYIHIRITARLLED 495 Query: 61 EIVFKVIDNGVGMNADTIRQILAPEG----PRIGYGIRNVDSRIKLHHGSGYGVTIASRS 116 + FK+IDNGVG ++L G GYGIRNVD RIKLH+GS YGVT+ SR+ Sbjct: 496 ALEFKIIDNGVGFPPG---RVLDNTGGQDLTNAGYGIRNVDQRIKLHYGSEYGVTLFSRA 552 Query: 117 GIGTCIQITIPC 128 GIGT ++I IP Sbjct: 553 GIGTTVRIVIPL 564 >B1DDM2.1 B1DDM2_9BACL Integral membrane sensor signal transduction histidine kinase Length = 588 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 66/128 (51%), Positives = 86/128 (67%), Gaps = 3/128 (2%) Query: 3 IQCIKYGERLSVYYDIDPEVLEYATVKLILQPLIENALEHAWFGTTLGIRLVVEKREAEI 62 IQ IKYG+R+ + Y+I PE+++ ATVKLI+QP +EN LEHAW G + I+ V E E+ Sbjct: 459 IQQIKYGDRVQIDYNISPEIVDLATVKLIVQPFVENVLEHAWRGDQIDIQ-VSGYLEGEV 517 Query: 63 V-FKVIDNGVGMNADTIRQILAPEG-PRIGYGIRNVDSRIKLHHGSGYGVTIASRSGIGT 120 V V DNG GM +TI I + EG R+GYGIRNV RI+L++G +GV I S G GT Sbjct: 518 VHLLVADNGNGMPQETIFHIFSGEGVERVGYGIRNVHERIQLYYGKDFGVAIESAEGEGT 577 Query: 121 CIQITIPC 128 C+ I IP Sbjct: 578 CVHIRIPA 585 >B1DDD2.1 B1DDD2_9BACL Histidine kinase internal region Length = 592 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 55/125 (44%), Positives = 79/125 (63%) Query: 3 IQCIKYGERLSVYYDIDPEVLEYATVKLILQPLIENALEHAWFGTTLGIRLVVEKREAEI 62 IQ IKY + V+ D++ E+ + +KLILQP +EN +HAWFG+ + IR+ ++ Sbjct: 451 IQRIKYAGKFDVHIDMERELADCKVIKLILQPFVENIFKHAWFGSHIAIRISGRAIGNKV 510 Query: 63 VFKVIDNGVGMNADTIRQILAPEGPRIGYGIRNVDSRIKLHHGSGYGVTIASRSGIGTCI 122 KVID G+GM D ++ ++A G GYGIRNVD RIKL +G YG+ I S G GT + Sbjct: 511 ELKVIDTGIGMKPDALKAVMAQPGQSGGYGIRNVDDRIKLRYGDEYGIEIGSVFGGGTTV 570 Query: 123 QITIP 127 +I +P Sbjct: 571 RILLP 575 >B3KH16.1 B3KH16_9BACI Histidine kinase internal region Length = 611 Score = 112 bits (281), Expect = 7e-24, Method: Composition-based stats. Identities = 58/129 (44%), Positives = 84/129 (65%), Gaps = 3/129 (2%) Query: 1 VAIQCIKYGERLSVYYDIDPEVLEYATVKLILQPLIENALEHAWFGTTLGIRLVVEKREA 60 VAIQ I++ ++L ++YD+D ++ T+KLILQP IEN + HA G GI + V+ R+ Sbjct: 466 VAIQKIRFRDKLHMHYDLDEQLFGNTTIKLILQPFIENCINHA-IGDESGININVKLRQE 524 Query: 61 --EIVFKVIDNGVGMNADTIRQILAPEGPRIGYGIRNVDSRIKLHHGSGYGVTIASRSGI 118 +I+ +VID+G+GM + + L GYG++NVD RIKL +G YGV+I SR GI Sbjct: 525 GDDILLQVIDDGIGMTPEQLDHALNKSDNLSGYGVKNVDDRIKLTYGEEYGVSIFSRLGI 584 Query: 119 GTCIQITIP 127 GT + I IP Sbjct: 585 GTAVTIRIP 593 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.143 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 765,361,112 Number of extensions: 29639807 Number of successful extensions: 81913 Number of sequences better than 1.0e-05: 867 Number of HSP's gapped: 81586 Number of HSP's successfully gapped: 867 Length of query: 130 Length of database: 3,060,696,203 Length adjustment: 95 Effective length of query: 35 Effective length of database: 2,165,699,778 Effective search space: 75799492230 Effective search space used: 75799492230 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)