BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0014.p
         (85 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DDD1.1 B1DDD1_9BACL Two component transcriptional regulator, A...   112   1e-23
B3KB77.1 B3KB77_9BACI Response regulator receiver                     102   1e-20
B1DDM3.1 B1DDM3_9BACL Two component transcriptional regulator, A...   101   2e-20
B3K7P5.1 B3K7P5_9BACI Response regulator receiver                      87   5e-16
B1D5E6.1 B1D5E6_9BACL Two component transcriptional regulator, A...    78   3e-13

>B1DDD1.1 B1DDD1_9BACL Two component transcriptional regulator, AraC family
          Length = 519

 Score =  112 bits (280), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/82 (57%), Positives = 67/82 (81%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L++ A HF F+PN+LG +F EETG  FSD++  RR++RV+ LL+DP LKVYE A RVGYK
Sbjct: 434 LKEVAAHFDFTPNYLGTLFKEETGTLFSDWLNERRMDRVRELLADPCLKVYEIAERVGYK 493

Query: 62  NLSHFSKQFKEFYGVSPGDYRR 83
           N+ +F++QFK+F G++PG+YR+
Sbjct: 494 NIIYFNRQFKQFTGMTPGEYRK 515


>B3KB77.1 B3KB77_9BACI Response regulator receiver
          Length = 524

 Score =  102 bits (253), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/82 (59%), Positives = 62/82 (75%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           LRD AN FSFSPN+LG +F EETG  FSDYV   R+ER + LL   KLK+YE A++ GY+
Sbjct: 440 LRDMANRFSFSPNYLGVLFKEETGHNFSDYVIKLRMERARDLLKTTKLKIYEIASQTGYQ 499

Query: 62  NLSHFSKQFKEFYGVSPGDYRR 83
            L +FS+QFKE YG++P +YRR
Sbjct: 500 YLPYFSRQFKEMYGMTPLEYRR 521


>B1DDM3.1 B1DDM3_9BACL Two component transcriptional regulator, AraC family
          Length = 267

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 64/83 (77%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L++ A  F+FSPN+LG +F EE GV FS+YV   R+ER   LL DPK+K+YE A++VGY+
Sbjct: 184 LKEVAERFAFSPNYLGLMFKEEMGVGFSEYVITMRMERAGELLKDPKVKIYEVADQVGYR 243

Query: 62  NLSHFSKQFKEFYGVSPGDYRRH 84
            + +FS+QFKE +G++P D+RRH
Sbjct: 244 YMPYFSRQFKETFGMTPIDFRRH 266


>B3K7P5.1 B3K7P5_9BACI Response regulator receiver
          Length = 525

 Score = 87.0 bits (214), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 37/82 (45%), Positives = 61/82 (74%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           ++D A HFSFSP+H+G +  E++G  F++ +   R+E+ + LL  P LK+YE A++VGY+
Sbjct: 441 IKDIAQHFSFSPSHIGFLIKEKSGSTFNELLVQLRMEKAQELLKQPGLKIYEVADQVGYR 500

Query: 62  NLSHFSKQFKEFYGVSPGDYRR 83
            L +FS+QFKE YG++P ++R+
Sbjct: 501 YLPYFSRQFKERYGMTPLEFRK 522


>B1D5E6.1 B1D5E6_9BACL Two component transcriptional regulator, AraC family
          Length = 513

 Score = 77.8 bits (190), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/84 (42%), Positives = 54/84 (64%)

Query: 2   LRDAANHFSFSPNHLGQIFYEETGVYFSDYVGLRRLERVKVLLSDPKLKVYEAANRVGYK 61
           L+     F   PN+LGQ+F ++TG  F+DY+   R+++ K LL+D +LKV E A +VGY 
Sbjct: 430 LKSLGLQFHIHPNYLGQLFNKQTGDTFTDYLNKYRIDKAKELLADSRLKVNEIARQVGYW 489

Query: 62  NLSHFSKQFKEFYGVSPGDYRRHL 85
              +F KQFK+  G+ PGD++  L
Sbjct: 490 ETGYFYKQFKKHVGMVPGDFKELL 513


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.141    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 523,503,702
Number of extensions: 16971747
Number of successful extensions: 60038
Number of sequences better than 1.0e-05: 1174
Number of HSP's gapped: 60872
Number of HSP's successfully gapped: 1174
Length of query: 85
Length of database: 3,060,696,203
Length adjustment: 55
Effective length of query: 30
Effective length of database: 2,542,540,378
Effective search space: 76276211340
Effective search space used: 76276211340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)