BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0013.p
         (157 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K7P5.1 B3K7P5_9BACI Response regulator receiver                      97   4e-19
B3KB77.1 B3KB77_9BACI Response regulator receiver                      83   8e-15
B1DDD1.1 B1DDD1_9BACL Two component transcriptional regulator, A...    74   5e-12

>B3K7P5.1 B3K7P5_9BACI Response regulator receiver
          Length = 525

 Score = 97.1 bits (240), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 85/150 (56%), Gaps = 1/150 (0%)

Query: 4   LRELRNSFRQARNAXXXXXXXXXXXXXXHSDARG-PISASVKDLDSILQSLFAAMSSYRL 62
           + EL++S+RQA  A              + D R  P     + LD+ +  L AAM  Y L
Sbjct: 270 MEELQSSYRQAIEAVEGKMFLGKGSLIKYEDVRAEPGMLDSRMLDAHMNKLLAAMEGYEL 329

Query: 63  VDVDDCNEELFVWVGNMETKLEIYQLFLHIVSKLDAYLHTINEDFYELLGLERKHLNILY 122
           V + D  E LF  + N+ ++  ++ +  +I+ +LD YL + NED +ELLG+E  HL+IL 
Sbjct: 330 VRICDEVEGLFGSITNLRSRFSVHNMSNYIIWRLDQYLSSRNEDLFELLGMEIHHLDILM 389

Query: 123 DLETIDDMKSWLRRRMFELSERLQRKRQGK 152
             +TI+D++SW  +R+FE+SERL  K   K
Sbjct: 390 QFDTINDIRSWFVQRIFEISERLYEKNNSK 419


>B3KB77.1 B3KB77_9BACI Response regulator receiver
          Length = 524

 Score = 82.8 bits (203), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 50/152 (32%), Positives = 82/152 (53%)

Query: 1   VSHLRELRNSFRQARNAXXXXXXXXXXXXXXHSDARGPISASVKDLDSILQSLFAAMSSY 60
           V  L +L  S+ +A +A              +S+        VK LD  L +LF AM+ Y
Sbjct: 267 VHQLEQLHTSYMEALDALDYKMFRGKGKWILYSEVPTEDREDVKSLDIRLDALFTAMTEY 326

Query: 61  RLVDVDDCNEELFVWVGNMETKLEIYQLFLHIVSKLDAYLHTINEDFYELLGLERKHLNI 120
            +V + D  E + +   ++ +K  I  L ++I+ KL+ +L  +NE+ Y + GLE K+L+I
Sbjct: 327 DIVRIYDELEAIQLLASSIRSKFTIRNLAVYIMVKLEGHLQAMNEELYRMAGLELKNLDI 386

Query: 121 LYDLETIDDMKSWLRRRMFELSERLQRKRQGK 152
           L   ET+DD+ SWLR +  E+SE L+ ++  K
Sbjct: 387 LLQFETMDDIFSWLRMKAMEISEMLKNRKSTK 418


>B1DDD1.1 B1DDD1_9BACL Two component transcriptional regulator, AraC family
          Length = 519

 Score = 73.9 bits (180), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 73/145 (50%)

Query: 6   ELRNSFRQARNAXXXXXXXXXXXXXXHSDARGPISASVKDLDSILQSLFAAMSSYRLVDV 65
           ELR S+RQA+ A                           +++  ++ + AA+  Y LV +
Sbjct: 266 ELRVSYRQAQAALSAKWLLGKNRLIKDISGTAREDKLEPNVEENVEQMLAAILDYDLVSI 325

Query: 66  DDCNEELFVWVGNMETKLEIYQLFLHIVSKLDAYLHTINEDFYELLGLERKHLNILYDLE 125
           DD   +LF    ++  K   Y L + + SKL A L   NE+ YELL  + +   +L+  E
Sbjct: 326 DDRLLKLFDKNESVSQKQYAYDLIIRVTSKLHADLLQRNENLYELLKWDAQKAAVLFQFE 385

Query: 126 TIDDMKSWLRRRMFELSERLQRKRQ 150
           TIDD+ SWLRRR FELSE L  KRQ
Sbjct: 386 TIDDILSWLRRRFFELSELLYVKRQ 410


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.137    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 744,704,797
Number of extensions: 26170790
Number of successful extensions: 66166
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 66166
Number of HSP's successfully gapped: 3
Length of query: 157
Length of database: 3,060,696,203
Length adjustment: 118
Effective length of query: 39
Effective length of database: 1,949,016,433
Effective search space: 76011640887
Effective search space used: 76011640887
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 125 (52.8 bits)