BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0012.p (262 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB77.1 B3KB77_9BACI Response regulator receiver 149 2e-34 B3K7P5.1 B3K7P5_9BACI Response regulator receiver 142 4e-32 B1DDD1.1 B1DDD1_9BACL Two component transcriptional regulator, A... 135 3e-30 C2L0L9.1 C2L0L9_9FIRM Response regulator receiver protein 122 3e-26 B1DDM3.1 B1DDM3_9BACL Two component transcriptional regulator, A... 120 1e-25 >B3KB77.1 B3KB77_9BACI Response regulator receiver Length = 524 Score = 149 bits (376), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 81/195 (41%), Positives = 125/195 (64%), Gaps = 9/195 (4%) Query: 1 MYKXXXXXXXXXXXXGLQRFMNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPI 60 MYK G++ F+ WE LGM+V + ++GF A EVLES+ VDI+VTD+RMP Sbjct: 1 MYKVLLADDEILDLEGMKSFIPWEDLGMKVIDSVNNGFAACEVLESEKVDILVTDVRMPN 60 Query: 61 MSGMELARRALELNPKLKIIFVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEEVR 120 M+G+ELA+RAL+L +L+IIFVSGY+DF Y KQAI+++A YVLKP++D ++ +L +VR Sbjct: 61 MTGLELAQRALKLQEELRIIFVSGYQDFGYVKQAIALNACSYVLKPMEDQELIDALTKVR 120 Query: 121 ETLDREQEHLHLERYFSESEPLLRRELFMQLLDGNPDEAKMLPLLQR----VGIYWSDTR 176 LDR E E + + P+L+ + +Q+L P + +L +++R ++W Sbjct: 121 MELDRLHERKETEEAYQQMIPILKNQYLLQILQ-RPYDGAILDIIKREYRLTELHWP--- 176 Query: 177 LYTALLEPDDMS-WK 190 + LLE D++S W+ Sbjct: 177 VCVILLELDNVSTWR 191 >B3K7P5.1 B3K7P5_9BACI Response regulator receiver Length = 525 Score = 142 bits (357), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 84/262 (32%), Positives = 143/262 (54%), Gaps = 7/262 (2%) Query: 1 MYKXXXXXXXXXXXXGLQRFMNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPI 60 MYK G++RF+ W LGMEV + ++ A E++E + +DI+V+D+ MP Sbjct: 1 MYKVLLVDDEELDLEGMKRFIPWSDLGMEVRGSVNNALAACEIMEEEPIDILVSDVNMPY 60 Query: 61 MSGMELARRALELNPKLKIIFVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEEVR 120 MSG+ELAR ALE P ++IIFVSGY++F Y +QA+S+ A YVLKP++D+++ SL +V+ Sbjct: 61 MSGLELARIALERRPNMRIIFVSGYQEFSYVQQAMSLKAYSYVLKPMNDSELVTSLLKVK 120 Query: 121 ETLDREQEHLHLERYFSESEPLLRRELFMQLL--DGNPDEAKMLPLLQRVGIYWSDTRLY 178 LD E + +E + P+++ +L ++LL + D + L G+ + + Sbjct: 121 RDLDDETKQREVEMAYQRMIPIVKSDLLIRLLREEETEDNESLSKLTVSCGLDRMNWPIR 180 Query: 179 TALLEPDDMSWKLNGYSDGAKAEIENMLEAAIERYCAEEQIQA-CRTERFHYALILEEHV 237 ++E D++ W+ G S ++ E+ + I A + I C+ AL+LE+ Sbjct: 181 VVVMELDNLLWRQGG-SFTSQREVSRIFLQQIHDVIARQGIVPYCKLSSQRVALLLEDEA 239 Query: 238 DRGRLHRL---IQQAVAGTPLT 256 +H++ IQQ + T Sbjct: 240 VEPTVHKVYDAIQQLTPASITT 261 >B1DDD1.1 B1DDD1_9BACL Two component transcriptional regulator, AraC family Length = 519 Score = 135 bits (341), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 72/178 (40%), Positives = 118/178 (66%), Gaps = 10/178 (5%) Query: 17 LQRFMNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPIMSGMELARRALELNPK 76 ++R + L ++V ASSGFEAL+++E++ +D+I++DIRMPIMSG E AR+A E NP Sbjct: 17 MRRRVTGSPLPLQVVGTASSGFEALKLMENERIDVILSDIRMPIMSGTEFARKAKERNPH 76 Query: 77 LKIIFVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEEVRETLDREQEHLHLERYF 136 ++++F+SG+EDFQYAK+AI M+ASGY+LKPV D ++ LE V + ++ E++ + Sbjct: 77 VQVVFISGHEDFQYAKEAIQMNASGYLLKPVKDQELHDMLETVYKQVESERKRHSI---V 133 Query: 137 SESEPLLRRELFMQLLDGNPDEAK---MLPLLQRVGIYWSDTRLYTALLEPDDMSWKL 191 +E+ L+ REL ++ L +E + + P L + Y + A++E DD+ WK+ Sbjct: 134 TEALSLVNRELMLKWLGDTAEEHEREHIAPFLNSLLQYGA----AAAVVEIDDVEWKI 187 >C2L0L9.1 C2L0L9_9FIRM Response regulator receiver protein Length = 541 Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 57/139 (41%), Positives = 94/139 (67%), Gaps = 4/139 (2%) Query: 21 MNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPIMSGMELARRALELNPKLKII 80 ++W+ LG + A +G EALE+ E + +D+++TDI+MP M G+ L+ R EL P +KII Sbjct: 23 IDWDRLGYSLAGYAKNGLEALEIAEEKPIDVVLTDIKMPYMDGLTLSHRLKELYPSIKII 82 Query: 81 FVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEEVRETLDR---EQEHLH-LERYF 136 SG+++F+YAK+AI + A Y+LKPVD ++ R ++V E LD+ E++ +H L+ Y+ Sbjct: 83 IFSGFDEFEYAKEAIRLEAEEYMLKPVDAGELSRVFQKVHEALDQEFDEKQSIHRLKNYY 142 Query: 137 SESEPLLRRELFMQLLDGN 155 ES P+L+ L+ L++G Sbjct: 143 LESLPILQESLYTSLIEGT 161 >B1DDM3.1 B1DDM3_9BACL Two component transcriptional regulator, AraC family Length = 267 Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 63/133 (47%), Positives = 88/133 (66%), Gaps = 5/133 (3%) Query: 1 MYKXXXXXXXXXXXXGLQRFMNWEGLGMEVCAAASSGFEALEVLESQAVDIIVTDIRMPI 60 MYK G++ F+ W LG+EV AA ++GF+A EVL+ +DI+VTD+ MP Sbjct: 1 MYKVLIADDEVLDLEGMRLFIPWTELGLEVVAAVNNGFDAYEVLKGGKIDILVTDVHMPS 60 Query: 61 MSGMELARRALELNP--KLKIIFVSGYEDFQYAKQAISMSASGYVLKPVDDADMRRSLEE 118 MSG+ELAR+A E L++IFVSGY+DF Y KQA+S+ A YVLKP+DD+++ +L Sbjct: 61 MSGLELARKAQETESCLGLRVIFVSGYQDFHYVKQALSLRAYSYVLKPMDDSELVDALVH 120 Query: 119 VRETLD---REQE 128 V + LD R+QE Sbjct: 121 VTKELDEVTRKQE 133 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,387,303,941 Number of extensions: 53842114 Number of successful extensions: 210981 Number of sequences better than 1.0e-05: 4063 Number of HSP's gapped: 217913 Number of HSP's successfully gapped: 4063 Length of query: 262 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 129 Effective length of database: 1,807,701,208 Effective search space: 233193455832 Effective search space used: 233193455832 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)