BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0011.p (283 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB76.1 B3KB76_9BACI Extracellular solute-binding protein family 1 304 8e-81 B1DDM4.1 B1DDM4_9BACL Extracellular solute-binding protein family 1 290 1e-76 B3KBE5.1 B3KBE5_9BACI Extracellular solute-binding protein family 1 288 4e-76 B3K7P6.1 B3K7P6_9BACI Extracellular solute-binding protein family 1 258 3e-67 B3K494.1 B3K494_9BACI Extracellular solute-binding protein family 1 88 1e-15 >B3KB76.1 B3KB76_9BACI Extracellular solute-binding protein family 1 Length = 556 Score = 304 bits (778), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 153/285 (53%), Positives = 194/285 (68%), Gaps = 2/285 (0%) Query: 1 VFIENMQYASKLFREKLITQDMFTQTGDQISEKLKTGRVAVYVDGDVVNPGRGADTALRT 60 +F E+MQY++KLFREKLI+QD TQT DQ+ EK+ TGRVAVY A L Sbjct: 270 IFRESMQYSAKLFREKLISQDAMTQTADQVKEKVNTGRVAVYAASSPTENAMNAHAELTA 329 Query: 61 TDPDAGYDIIWPIHKAGLDATKITPNNYNSLGWNVLVITKNAKDPEAIFSYLDWVTSEEG 120 DP+AGY +IWPIHK GLD KI P Y LGWNV VITK+AKDPEAIF++LDW T EG Sbjct: 330 KDPEAGYFMIWPIHKEGLDKNKIFPGTYTQLGWNVSVITKSAKDPEAIFAFLDWYTGPEG 389 Query: 121 QRILNFGRQGLYWDEYDADGV-PILNEAGLNTPQGDKDKERI-GRFNWVGNTTFIDQTKA 178 Q +L +G G YWD ++ DGV P E + G + I +W GNT F+D KA Sbjct: 390 QSVLMWGPPGGYWDGFEEDGVTPKFTEKYVTDAAGLGKLQAITTNLHWNGNTVFVDTAKA 449 Query: 179 KMDAQLPADKQNWTTLAQQKVTWKTSKNFTEFVNLDPLPDSEEGTIATAVNDIYQEAFAK 238 K ++ LP +++NW+T Q +VTWKT N TE++NLDP PDSEEG I V DI+ E+ AK Sbjct: 450 KYESTLPEEQRNWSTRWQYEVTWKTQANATEYINLDPAPDSEEGIIRQRVEDIFTESRAK 509 Query: 239 TLYAKSDDEVLSLLNKANEDAKKAGYEKLLKYQTEKWQDNLSKMK 283 LYAK D EVL++L+KA DA+ AGY+KLL ++T KWQ+N++KMK Sbjct: 510 ALYAKDDAEVLAILDKAEADAQAAGYDKLLAFKTTKWQENVAKMK 554 >B1DDM4.1 B1DDM4_9BACL Extracellular solute-binding protein family 1 Length = 564 Score = 290 bits (742), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 145/284 (51%), Positives = 190/284 (66%), Gaps = 1/284 (0%) Query: 1 VFIENMQYASKLFREKLITQDMFTQTGDQISEKLKTGRVAVYVDGDVVNPGRGADTALRT 60 VF E+MQ+ASKLFREKL++ D TQT DQ+ E+ G AV+ G D L+ Sbjct: 279 VFRESMQFASKLFREKLMSPDSLTQTKDQVKEQAYNGTAAVFAGASPTEYGAVGDAELKK 338 Query: 61 TDPDAGYDIIWPIHKAGLDATKITPNNYNSLGWNVLVITKNAKDPEAIFSYLDWVTSEEG 120 DP++GY ++WPIHKAGLD KI Y LGWNV VITK+AKDPE IF++LD++T EG Sbjct: 339 KDPNSGYMMVWPIHKAGLDKNKIWAGTYTQLGWNVSVITKSAKDPEKIFAFLDYLTGPEG 398 Query: 121 QRILNFGRQGLYWDEYDADGVPILNEAGLNTPQG-DKDKERIGRFNWVGNTTFIDQTKAK 179 R L +G +G+YW DADG PI +A + +G K + F W GNT FID +K K Sbjct: 399 TRTLFWGPEGIYWKGTDADGSPIFTDAYTSDVEGRTKMMDATVNFQWNGNTVFIDTSKMK 458 Query: 180 MDAQLPADKQNWTTLAQQKVTWKTSKNFTEFVNLDPLPDSEEGTIATAVNDIYQEAFAKT 239 + LP ++Q+W Q +TWKT KN TEF+NL P PDSEEG IA ++Y+EA AK Sbjct: 459 FELTLPEEQQSWEARWQNAITWKTQKNATEFINLAPAPDSEEGIIAQTFEELYKEARAKA 518 Query: 240 LYAKSDDEVLSLLNKANEDAKKAGYEKLLKYQTEKWQDNLSKMK 283 LYAKSD+EVL++L+KA +DA+ GY+KLL Y+T +WQ+N+ MK Sbjct: 519 LYAKSDEEVLAILDKAQKDAEAIGYDKLLAYKTARWQENVKSMK 562 >B3KBE5.1 B3KBE5_9BACI Extracellular solute-binding protein family 1 Length = 555 Score = 288 bits (737), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 147/285 (51%), Positives = 195/285 (68%), Gaps = 2/285 (0%) Query: 1 VFIENMQYASKLFREKLITQDMFTQTGDQISEKLKTGRVAVYVDGDVVNPGRGADTALRT 60 V+ E +QY S+L+REKLITQD FTQ +Q+ +K+ +G VAVYV G + L+ Sbjct: 268 VYRELLQYMSRLYREKLITQDAFTQKLEQVEQKILSGNVAVYVASSPTEFGSKGNNLLKA 327 Query: 61 TDPDAGYDIIWPIHKAGLDATKITPNNYNSLGWNVLVITKNAKDPEAIFSYLDWVTSEEG 120 DPDAGY +IWP+HK GLD KI P +Y LGWNV VIT+ AKDPEAIF++LDW T EG Sbjct: 328 QDPDAGYIMIWPVHKEGLDRDKIFPGDYKQLGWNVSVITQAAKDPEAIFAFLDWFTGPEG 387 Query: 121 QRILNFGRQGLYWDEYDADGVPILNEAGLNTPQG-DKDKERIGRFNWVGNTTFIDQTKAK 179 QR + +G +GLYWD D + +P+ + + +G D+ F W GNT ++D +K K Sbjct: 388 QRTIMWGPEGLYWDGTDEEDMPLFTDKFTSDAKGRDELMNATVNFQWNGNTVYVDNSKMK 447 Query: 180 MDAQLPADKQNWTTLAQQKVTWKTSKNFTEFVNLDPLPDSEEGTIATAVNDIYQEAFAKT 239 ++ LP +K+N+ T Q ++TWKT N TE+VNLDP DSEEG IA V +IY++A AK Sbjct: 448 FESTLPPEKRNFETYWQSEITWKTQMNTTEYVNLDPAGDSEEGIIAQRVFEIYEQARAKA 507 Query: 240 L-YAKSDDEVLSLLNKANEDAKKAGYEKLLKYQTEKWQDNLSKMK 283 + A SD EVLSLL+KA DA+KAGY+KLL+Y+T KWQ+N KMK Sbjct: 508 ISSASSDQEVLSLLDKAEADAQKAGYDKLLQYKTAKWQENKQKMK 552 >B3K7P6.1 B3K7P6_9BACI Extracellular solute-binding protein family 1 Length = 565 Score = 258 bits (660), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 133/282 (47%), Positives = 180/282 (63%), Gaps = 1/282 (0%) Query: 1 VFIENMQYASKLFREKLITQDMFTQTGDQISEKLKTGRVAVYVDGDVVNPGRGADTALRT 60 VF E +Y +KL+REKLI+QD FTQT DQ+ EK+ TGRVAV+ A L Sbjct: 282 VFREAQKYIAKLYREKLISQDAFTQTEDQVLEKVMTGRVAVFAGSSPTTMAGDAQPELIK 341 Query: 61 TDPDAGYDIIWPIHKAGLDATKITPNNYNSLGWNVLVITKNAKDPEAIFSYLDWVTSEEG 120 DPD GY +IWPIHK GLD KI P Y S GWN IT AKDPEAIF++LDW T EG Sbjct: 342 EDPDGGYFMIWPIHKPGLDKNKIYPGTYTSFGWNAAYITTAAKDPEAIFAFLDWYTGPEG 401 Query: 121 QRILNFGRQGLYWDEYDADGVPILNEAGLNTPQGDKDKERIGRFNWVGNTTFIDQTKAKM 180 + FG +G W+ +D +G P A + + + + +VGNT++ID K K Sbjct: 402 MNLQFFGPEGDNWEGFDEEGKPNFT-ADYDPAEVADIQTKNEPIMFVGNTSYIDPAKYKY 460 Query: 181 DAQLPADKQNWTTLAQQKVTWKTSKNFTEFVNLDPLPDSEEGTIATAVNDIYQEAFAKTL 240 A+LP ++Q+W T QQ +TW T N TEFVNL+P P+SEEG I T+V++++ E +A ++ Sbjct: 461 MAELPFEEQDWRTKYQQTITWPTQYNVTEFVNLNPPPESEEGIIQTSVDELFLEIYANSV 520 Query: 241 YAKSDDEVLSLLNKANEDAKKAGYEKLLKYQTEKWQDNLSKM 282 AKSD++V +L++ NED GY KLL+++T +WQ+NL KM Sbjct: 521 MAKSDEDVDKILDQGNEDLMAIGYGKLLEWRTARWQENLKKM 562 >B3K494.1 B3K494_9BACI Extracellular solute-binding protein family 1 Length = 554 Score = 87.8 bits (216), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 132/273 (48%), Gaps = 22/273 (8%) Query: 17 LITQDMFTQTGDQISEKLKTGR--VAVYVDGDVVNPGRGADTALRTTDPDAGYDIIWPIH 74 L+++D+F Q+ EK+ GR +Y D+ N AL DP++ Y + Sbjct: 294 LMSKDIFVDKRPQMEEKIAQGRYFAMLYQRSDMAN----QQNALYANDPNSVYIAVDGPA 349 Query: 75 KAGLDATKITPNNYNSLGWNVLVITKNAKDPEAIFSYLDWVTSEEGQRILNFGRQGLYWD 134 + LD ++ + + GW V +I+KN KD +LD++ SEEGQR G +G+ WD Sbjct: 350 NSNLDQPTLSGPSIS--GWTVTLISKNVKDKARAIRFLDYLISEEGQRDTYLGEKGVTWD 407 Query: 135 EYDADG--VPILNEAGLNTPQGDKDKERIGRFNWVGNTTFIDQTKAKMDAQLPADKQ--N 190 D +P + E LN+ +G DK + G + + T+ M A + KQ + Sbjct: 408 TIDGKDQFLPEVAEL-LNSDRGAFDK-KYGASHTFWMMMDNNVTQPWMPAAVEPFKQMED 465 Query: 191 WTTLAQQKVTWKTSKNFTEFVNLDPLPDSEEGTIATAVNDIYQEAFAKTLYAKSDDEVLS 250 WT Q +F++F LDP SEEG I V + + K ++AK+D E Sbjct: 466 WTRGKTQ--------SFSQFDQLDPDAGSEEGIINDKVMSEWGKILPKLIFAKTDAEFDQ 517 Query: 251 LLNKANEDAKKAGYEKLLKYQTEKWQDNLSKMK 283 + N + G+ K+ +Y+ +++++N+ K++ Sbjct: 518 IWNDYQAKRESLGFAKVQEYRQKEYEENVKKLE 550 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.313 0.131 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,801,772,238 Number of extensions: 79514098 Number of successful extensions: 146518 Number of sequences better than 1.0e-05: 30 Number of HSP's gapped: 146514 Number of HSP's successfully gapped: 30 Length of query: 283 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 149 Effective length of database: 1,798,280,193 Effective search space: 267943748757 Effective search space used: 267943748757 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)