BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0009.p
         (211 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DDM4.1 B1DDM4_9BACL Extracellular solute-binding protein family 1   176   9e-43
B3KBE5.1 B3KBE5_9BACI Extracellular solute-binding protein family 1   172   1e-41
B3KB76.1 B3KB76_9BACI Extracellular solute-binding protein family 1   151   3e-35
B3K7P6.1 B3K7P6_9BACI Extracellular solute-binding protein family 1   113   9e-24
A9U612.1 A9U612_PHYPA Predicted protein                                70   1e-10

>B1DDM4.1 B1DDM4_9BACL Extracellular solute-binding protein family 1
          Length = 564

 Score =  176 bits (447), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 78/122 (63%), Positives = 95/122 (77%)

Query: 67  KPVSFTYYSNYDWDTTEEWGRDSTTKWIADTLKVKMTPVQSSGAAETKFSTMIASGSLPD 126
           +P+ F++Y +YDW +   WG D  TKWI D +KV +TPVQS G A  K +TMIASG LPD
Sbjct: 68  EPLKFSFYGHYDWYSMPAWGGDEATKWIKDNMKVDITPVQSGGNAAQKLNTMIASGDLPD 127

Query: 127 VIMMDRGANVERLRQPGLLVPLDDYLDRYPNLKKNAGEATLNMLRSEDGKLYQFPNWYTS 186
           VI MDRGA+VE+LR+ G+LVP DDYLD+YPN KK  GE  +NMLRS+DGK+YQFPNWYTS
Sbjct: 128 VIWMDRGADVEKLREAGMLVPYDDYLDKYPNFKKWVGEEAINMLRSKDGKIYQFPNWYTS 187

Query: 187 SP 188
            P
Sbjct: 188 QP 189


>B3KBE5.1 B3KBE5_9BACI Extracellular solute-binding protein family 1
          Length = 555

 Score =  172 bits (437), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/122 (63%), Positives = 94/122 (77%)

Query: 67  KPVSFTYYSNYDWDTTEEWGRDSTTKWIADTLKVKMTPVQSSGAAETKFSTMIASGSLPD 126
           KP+ F++Y +YDW T  +WG D  TKWI +  KV + PV S G A+ K STMI SG LPD
Sbjct: 59  KPLEFSFYGHYDWYTMPDWGADLATKWIQENKKVNVVPVSSGGVAKNKLSTMIVSGELPD 118

Query: 127 VIMMDRGANVERLRQPGLLVPLDDYLDRYPNLKKNAGEATLNMLRSEDGKLYQFPNWYTS 186
           VI M+RGA VE+LR  G+LVP DDYLD+YPNLKK AGE+TL++LRS DGKLYQFPNWYT+
Sbjct: 119 VIWMERGAEVEKLRAEGMLVPFDDYLDKYPNLKKWAGESTLDLLRSPDGKLYQFPNWYTT 178

Query: 187 SP 188
            P
Sbjct: 179 QP 180


>B3KB76.1 B3KB76_9BACI Extracellular solute-binding protein family 1
          Length = 556

 Score =  151 bits (382), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 90/121 (74%)

Query: 68  PVSFTYYSNYDWDTTEEWGRDSTTKWIADTLKVKMTPVQSSGAAETKFSTMIASGSLPDV 127
           P+ F++Y +Y+  T   WG+D ++KWI +  KV +  + S G A+ KF+TMIAS  LPDV
Sbjct: 61  PLEFSFYGHYNEYTMPPWGQDESSKWIKENKKVTVNAIHSQGNAQQKFNTMIASTELPDV 120

Query: 128 IMMDRGANVERLRQPGLLVPLDDYLDRYPNLKKNAGEATLNMLRSEDGKLYQFPNWYTSS 187
           + MDRG +VE+LRQ  +LVP D+YLD+YPNLK+  G+  LNMLRS DGKLYQFPNWYT+ 
Sbjct: 121 MWMDRGPDVEKLRQADMLVPFDEYLDKYPNLKEWMGDEGLNMLRSPDGKLYQFPNWYTNQ 180

Query: 188 P 188
           P
Sbjct: 181 P 181


>B3K7P6.1 B3K7P6_9BACI Extracellular solute-binding protein family 1
          Length = 565

 Score =  113 bits (283), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 79/123 (64%), Gaps = 2/123 (1%)

Query: 67  KPVSFTYYSNYDWDTTEEWGRDSTTKWIADTLKVKMTPVQSSGAAETKFSTMIASGSLPD 126
           KP+ FT Y++Y+      W      KW+++   VK++ + ++GA   K S ++AS  LPD
Sbjct: 68  KPLEFTAYAHYENTNFPAWESTPAGKWLSENKGVKISMIAAAGAHTQKLSALMASDQLPD 127

Query: 127 VIMMDRGA-NVERLRQPGLLVPLDDYLDRYPNLKKNAGEATLNMLRSEDGKLYQFPNWYT 185
           +I  DR   ++ERLR+ G LV  DDYLD+YPNLK    +  LNMLR +DGKLY FPNWYT
Sbjct: 128 MIWTDRNHPDLERLREAGKLVAFDDYLDKYPNLKTWMSD-NLNMLRHDDGKLYMFPNWYT 186

Query: 186 SSP 188
           S P
Sbjct: 187 SRP 189


>A9U612.1 A9U612_PHYPA Predicted protein
          Length = 763

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 72/119 (60%), Gaps = 7/119 (5%)

Query: 68  PVSFTYYSNYDWDTTEEWGRDSTTKWIADTLKVKMTPVQSSGAAETKFSTMIASGSLPDV 127
           P++ T++   D +T + +  +   K I +   V +   Q +G    K + M+ASG LPDV
Sbjct: 265 PITLTWF---DKNTGDAF-NNPVAKAITEKTGVTVEIQQPTGNPVEKLNLMLASGDLPDV 320

Query: 128 IMMDRGANV-ERLRQPGLLVPLDDYLDRY-PNLKKNAGEATLNMLRSEDGKLYQFPNWY 184
           +M+DRG+++  +    G ++PL+D +D+Y P++K+  G+ TL   +++DGK Y F NWY
Sbjct: 321 VMLDRGSDIMNKYISSGAIIPLNDLIDKYGPHIKEMYGD-TLAKTKNDDGKNYYFANWY 378


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.130    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 844,495,626
Number of extensions: 29520708
Number of successful extensions: 54842
Number of sequences better than 1.0e-05: 26
Number of HSP's gapped: 54897
Number of HSP's successfully gapped: 26
Length of query: 211
Length of database: 3,060,696,203
Length adjustment: 130
Effective length of query: 81
Effective length of database: 1,835,964,253
Effective search space: 148713104493
Effective search space used: 148713104493
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 128 (53.9 bits)