BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0008.p (318 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB75.1 B3KB75_9BACI Binding-protein-dependent transport system... 337 1e-90 B3KBE4.1 B3KBE4_9BACI Binding-protein-dependent transport system... 333 1e-89 B1DDM5.1 B1DDM5_9BACL Binding-protein-dependent transport system... 316 2e-84 B3K7P7.1 B3K7P7_9BACI Binding-protein-dependent transport system... 302 2e-80 B9MLN8.1 B9MLN8_ANATD Binding-protein-dependent transport system... 255 3e-66 >B3KB75.1 B3KB75_9BACI Binding-protein-dependent transport systems inner membrane component Length = 298 Score = 337 bits (863), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 155/254 (61%), Positives = 205/254 (80%), Gaps = 3/254 (1%) Query: 15 MMKLSAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDN 74 M++L+ GDKV+ V+IY L L F+T YPFWN LVISFN GSDTA+GG+TFWPR TL+N Sbjct: 1 MVRLAFGDKVMMVIIYIFLAFLAFVTFYPFWNGLVISFNSGSDTAMGGVTFWPRDFTLEN 60 Query: 75 YEVVXXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIIT 134 Y +V +D+R+ + F IS+LRT++GT S+L T+I AYG+++ EL+GRK YM+ CI+T Sbjct: 61 YGIVF---QDNRLLNGFKISVLRTVIGTISSILVTSIFAYGMTKRELIGRKYYMIMCIVT 117 Query: 135 MYFSGGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGC 194 MYF GGLIPTF+L+R G+MD+FWV +IP ++SV+NMIIFRTFF GLP+GL ESA+IDGC Sbjct: 118 MYFGGGLIPTFMLVRGLGLMDSFWVFIIPSLVSVWNMIIFRTFFNGLPSGLEESAKIDGC 177 Query: 195 NHLGVLTRIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSNI 254 + G+ +IILP+SGPV+ATLSLFTAV HWN+WF SIYIN+ L+PIQT+L+QILNSNI Sbjct: 178 GNWGIFFKIILPLSGPVIATLSLFTAVSHWNEWFLPSIYINNENLLPIQTMLRQILNSNI 237 Query: 255 VTDQLQKAIGSSAA 268 +++Q+ +S A Sbjct: 238 MSEQMSNLDSASQA 251 >B3KBE4.1 B3KBE4_9BACI Binding-protein-dependent transport systems inner membrane component Length = 297 Score = 333 bits (854), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 158/246 (64%), Positives = 198/246 (80%), Gaps = 3/246 (1%) Query: 16 MKLSAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNY 75 M+LS GD+V IY L LL FI LYPFWN+ VISFN G+DT GGITFWPR TL+NY Sbjct: 1 MRLSNGDRVFVGFIYGSLALLAFIALYPFWNAAVISFNSGTDTMQGGITFWPREFTLENY 60 Query: 76 EVVXXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIITM 135 VV +D R+ F+IS+LRT+ GT LS++ TAI AYG+S+ ELMGR YM+ CI+TM Sbjct: 61 RVVF---KDERLIDGFVISVLRTVTGTFLSIVATAIFAYGISKRELMGRNFYMITCIVTM 117 Query: 136 YFSGGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGCN 195 YFSGGLIP +LL+RE G+M++FWV+V+PG+ISV+NMIIFRTFF G+P GL ESA IDG + Sbjct: 118 YFSGGLIPNYLLIRELGLMNSFWVMVVPGIISVWNMIIFRTFFKGIPPGLEESAHIDGSS 177 Query: 196 HLGVLTRIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSNIV 255 + GV RI+LP+SGPV+ATLSLFTAVYHWNDWF+ SIYI++T L+PIQT L+QILN+NI+ Sbjct: 178 NWGVFFRIVLPLSGPVIATLSLFTAVYHWNDWFAPSIYISNTDLLPIQTKLQQILNANIM 237 Query: 256 TDQLQK 261 +Q+Q Sbjct: 238 MEQMQN 243 >B1DDM5.1 B1DDM5_9BACL Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 316 bits (810), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 145/242 (59%), Positives = 190/242 (78%), Gaps = 3/242 (1%) Query: 27 VMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNYEVVXXXXRDSR 86 + +Y L ++ F T YPFWN+ VIS N G DTALGG+TFWPR+ T+DNYE+V +D R Sbjct: 14 IFVYICLTVIAFFTFYPFWNAAVISLNKGMDTALGGVTFWPRAFTVDNYEIVF---QDKR 70 Query: 87 IGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIITMYFSGGLIPTFL 146 I + F IS++RT++GT S+LFTA+ AYG+++ EL+GRK YM+ CI+T+YFSGG+IPTFL Sbjct: 71 IINGFYISVMRTVIGTLCSILFTAVFAYGMTKRELIGRKFYMIACIVTLYFSGGIIPTFL 130 Query: 147 LLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGCNHLGVLTRIILP 206 L+R G+MD F V +IPG+ISV+NMIIFRTFF GLP GL ESA+IDGC + RIILP Sbjct: 131 LIRGLGLMDNFLVFIIPGLISVWNMIIFRTFFQGLPKGLEESAQIDGCGYWATFFRIILP 190 Query: 207 ISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSNIVTDQLQKAIGSS 266 +SGPV+ATL+LFTAV HWNDWF S+YI +LIPIQT+L+QILNSNI+++Q + +S Sbjct: 191 LSGPVIATLALFTAVGHWNDWFYPSLYITKEKLIPIQTMLQQILNSNIMSEQFSQLDSAS 250 Query: 267 AA 268 + Sbjct: 251 QS 252 >B3K7P7.1 B3K7P7_9BACI Binding-protein-dependent transport systems inner membrane component Length = 299 Score = 302 bits (774), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 144/245 (58%), Positives = 189/245 (77%), Gaps = 3/245 (1%) Query: 14 VMMKLSAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLD 73 ++ +LS D+++ V+IY++L LL F YPFWN++V+SFNVG DTA GGITFWPR TL Sbjct: 1 MLKRLSFSDRMMLVIIYSLLSLLAFSAFYPFWNAIVVSFNVGVDTAKGGITFWPREFTLQ 60 Query: 74 NYEVVXXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCII 133 NYE++ DSR+ + F +SI R ++GT S+ TA+LAYG++R L+GR YMVF + Sbjct: 61 NYEIILG---DSRLLNGFAVSISRAVIGTVASIFMTALLAYGMTRTYLIGRGFYMVFFVF 117 Query: 134 TMYFSGGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDG 193 TMYF GGLIPT+LL+R G+MD+F V +IP +ISV+NMIIFRTFF GLP GL ESA IDG Sbjct: 118 TMYFGGGLIPTYLLIRSLGLMDSFLVFIIPSLISVWNMIIFRTFFKGLPNGLEESAHIDG 177 Query: 194 CNHLGVLTRIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSN 253 C+ G+ RIILP+SGPV+ATL+L TAV HWNDWF SIYI + L+PIQT+L++ LN+N Sbjct: 178 CSTWGIFFRIILPLSGPVIATLALLTAVAHWNDWFLPSIYITNGNLMPIQTILRETLNAN 237 Query: 254 IVTDQ 258 IV++Q Sbjct: 238 IVSEQ 242 >B9MLN8.1 B9MLN8_ANATD Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 255 bits (652), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 127/252 (50%), Positives = 170/252 (67%), Gaps = 3/252 (1%) Query: 16 MKLSAGDKVLQVMIYTVLLLLGFITLYPFWNSLVISFNVGSDTALGGITFWPRSPTLDNY 75 +K S GDKV + T++L++ F+TLYP W +V SFN G D LGGI FWPR TLDNY Sbjct: 3 IKSSFGDKVFDIFNITLMLIICFLTLYPIWYIIVYSFNEGKDAMLGGIYFWPRKFTLDNY 62 Query: 76 EVVXXXXRDSRIGHAFLISILRTIVGTTLSVLFTAILAYGLSRHELMGRKVYMVFCIITM 135 + V +S I AF++++ RT++ TTL V FTA++AY R EL+GRK+YM IT+ Sbjct: 63 KTVF---SNSDITTAFMVTVARTVITTTLHVFFTAMVAYAFLRKELLGRKIYMAMGTITL 119 Query: 136 YFSGGLIPTFLLLREFGMMDTFWVLVIPGMISVYNMIIFRTFFLGLPAGLVESARIDGCN 195 +F GGLIP FLL++ G+ +TFWV VIPGM + YN+IIF+ FF LP L ESA+IDG N Sbjct: 120 FFGGGLIPYFLLIKSLGLYNTFWVYVIPGMFNFYNLIIFQAFFRELPIELEESAKIDGAN 179 Query: 196 HLGVLTRIILPISGPVVATLSLFTAVYHWNDWFSASIYINDTRLIPIQTLLKQILNSNIV 255 + TRIILP+S PV+AT++LF VY+WND+F I+IN+ +L PIQT L +++ Sbjct: 180 DFIIFTRIILPLSTPVLATIALFVGVYNWNDYFMGVIFINNPKLQPIQTFLYKVIAQVTS 239 Query: 256 TDQLQKAIGSSA 267 L A G A Sbjct: 240 NQMLAYAPGGIA 251 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,712,168,216 Number of extensions: 66327272 Number of successful extensions: 219940 Number of sequences better than 1.0e-05: 5207 Number of HSP's gapped: 215387 Number of HSP's successfully gapped: 5207 Length of query: 318 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 183 Effective length of database: 1,788,859,178 Effective search space: 327361229574 Effective search space used: 327361229574 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)