BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0007.p (231 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KB74.1 B3KB74_9BACI Binding-protein-dependent transport system... 362 1e-98 B1DDM6.1 B1DDM6_9BACL Binding-protein-dependent transport system... 354 4e-96 B3KBE3.1 B3KBE3_9BACI Binding-protein-dependent transport system... 343 8e-93 B3K7P8.1 B3K7P8_9BACI Binding-protein-dependent transport system... 333 6e-90 B3K492.1 B3K492_9BACI Binding-protein-dependent transport system... 255 2e-66 >B3KB74.1 B3KB74_9BACI Binding-protein-dependent transport systems inner membrane component Length = 318 Score = 362 bits (930), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 172/231 (74%), Positives = 203/231 (87%) Query: 1 MRNTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSM 60 MRNTIVISLLK IGFPAPILLALMLNEVR M FKR++QTVSYLPHFLSWVIV GF S+ Sbjct: 88 MRNTIVISLLKFLIGFPAPILLALMLNEVRHMFFKRLVQTVSYLPHFLSWVIVSGFAISL 147 Query: 61 LSTDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDP 120 LSTDNGSVN+LL L+L EPI+FLS+PEYFWGILV TG+WKE+GF++IVYLAA+AG+DP Sbjct: 148 LSTDNGSVNILLQKLNLIEEPINFLSLPEYFWGILVTTGVWKEIGFSSIVYLAAVAGVDP 207 Query: 121 HLYEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDV 180 H+YEAA +DGA +F+QI ITLP I PV++IF+ILA+GN+L AGFEDIL+LA NP+LR+V Sbjct: 208 HMYEAADMDGASKFRQIFTITLPSIMPVVVIFMILAIGNLLTAGFEDILLLAKNPVLREV 267 Query: 181 SDVIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGSSLW 231 SDVIDTYVYR+GI N+RFSYA A GLFKAV+S+ LL +AN ARK G+SLW Sbjct: 268 SDVIDTYVYRIGIENSRFSYATAVGLFKAVISVMLLTIANLIARKSGNSLW 318 >B1DDM6.1 B1DDM6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 319 Score = 354 bits (908), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 166/231 (71%), Positives = 201/231 (87%) Query: 1 MRNTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSM 60 MRNTI+IS+LKL GFPAPI+LALMLNEV+ M FKR++QTVSYLPHFLSWVIV GF S+ Sbjct: 89 MRNTIIISVLKLLFGFPAPIILALMLNEVKNMYFKRVVQTVSYLPHFLSWVIVSGFAMSI 148 Query: 61 LSTDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDP 120 LS +NGS+N+LL ++HL EPISFLS+PEYFW I+V TG+WKE+GF++IVYLAAIAGIDP Sbjct: 149 LSVENGSLNILLQSVHLIKEPISFLSIPEYFWTIIVTTGVWKEIGFSSIVYLAAIAGIDP 208 Query: 121 HLYEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDV 180 ++YEAASIDGA RFKQI +IT+P I PV+IIFLILA+GN+L+AGFED+L+L NP+LR+V Sbjct: 209 NMYEAASIDGASRFKQIFMITIPTIMPVVIIFLILAIGNLLSAGFEDLLLLGVNPVLREV 268 Query: 181 SDVIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGSSLW 231 SDV+DTYVYR GI RFSYA A GLFKAV+S+GLL AN AR+ G+SLW Sbjct: 269 SDVLDTYVYRTGITGQRFSYATAVGLFKAVISVGLLTFANLLARRTGNSLW 319 >B3KBE3.1 B3KBE3_9BACI Binding-protein-dependent transport systems inner membrane component Length = 317 Score = 343 bits (879), Expect = 8e-93, Method: Compositional matrix adjust. Identities = 169/231 (73%), Positives = 197/231 (85%) Query: 1 MRNTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSM 60 MRNT+VISLLKLCIGFPAPILLALMLNEV FKRI+QT+SYLPHFLSWVIV GF S+ Sbjct: 87 MRNTLVISLLKLCIGFPAPILLALMLNEVGRRSFKRIVQTISYLPHFLSWVIVSGFAISI 146 Query: 61 LSTDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDP 120 LSTDNGS+N+LL L L EPI+FLS P+YFW IL T +WKE+GF++IVYLAAIAGI+P Sbjct: 147 LSTDNGSLNILLQKLSLIDEPINFLSEPKYFWSILTVTNVWKEIGFSSIVYLAAIAGINP 206 Query: 121 HLYEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDV 180 LYEAASIDGA R KQI IT+P I P+I++F ILA+GN LNAGFEDIL+LA NP+LRDV Sbjct: 207 QLYEAASIDGASRLKQIISITIPSIMPIIVVFSILAIGNFLNAGFEDILLLAGNPVLRDV 266 Query: 181 SDVIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGSSLW 231 SDV+DTYVYR+GI N+RFSYA AAGLFKA++S+ LLA AN AR+ G+SLW Sbjct: 267 SDVLDTYVYRIGIQNSRFSYATAAGLFKAIISVLLLAGANYWARRSGNSLW 317 >B3K7P8.1 B3K7P8_9BACI Binding-protein-dependent transport systems inner membrane component Length = 325 Score = 333 bits (855), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 158/231 (68%), Positives = 195/231 (84%) Query: 1 MRNTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSM 60 +RNTIVISLLK IGFPAPI+LALMLNEVR M FKR++QT++YLPHF+SWVIV G ++ Sbjct: 95 IRNTIVISLLKFLIGFPAPIILALMLNEVRHMFFKRVVQTITYLPHFMSWVIVAGLTTAL 154 Query: 61 LSTDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDP 120 L+T+NGSVNMLL + EPI+FLS+ EYF IL+ +WKE+GF +IVYLAAIA +DP Sbjct: 155 LATENGSVNMLLQKIGTIQEPINFLSLKEYFLSILISANVWKEIGFGSIVYLAAIASVDP 214 Query: 121 HLYEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDV 180 HLYEAA +DGA +FKQI LITLP I PV++IF+ILA+GN+LNAGFEDIL+LATNP+LR V Sbjct: 215 HLYEAADMDGASKFKQIYLITLPSILPVVVIFMILAIGNLLNAGFEDILLLATNPVLRPV 274 Query: 181 SDVIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGSSLW 231 SDVIDTYVYR+GI ++R+SY A GLFKA++SIGLL +AN AR+ G+SLW Sbjct: 275 SDVIDTYVYRVGIGSHRYSYGVAIGLFKAIISIGLLTIANYIARRSGNSLW 325 >B3K492.1 B3K492_9BACI Binding-protein-dependent transport systems inner membrane component Length = 331 Score = 255 bits (651), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 124/229 (54%), Positives = 173/229 (75%), Gaps = 2/229 (0%) Query: 1 MRNTIVISLLKLCIGFPAPILLALMLNEVRLMLFKRIIQTVSYLPHFLSWVIVGGFVGSM 60 MRNT+ ISLLKL IGFP PI+ AL LNE+R + +KR IQT+SYLPHFLSWVI+GG + + Sbjct: 102 MRNTLGISLLKLFIGFPLPIIFALFLNEIRSVRYKRTIQTISYLPHFLSWVILGGILMTW 161 Query: 61 LSTDNGSVNMLLMNLHLTSEPISFLSVPEYFWGILVGTGIWKEMGFAAIVYLAAIAGIDP 120 L+ D G +N +L+ LH+ EPI++L+ P+YFWGI++ + IWKE+G++AI+YLAAIA I P Sbjct: 162 LA-DIGIINNILLALHIIDEPITYLAEPKYFWGIIITSDIWKELGWSAIIYLAAIASISP 220 Query: 121 HLYEAASIDGAGRFKQIQLITLPCIRPVIIIFLILAVGNILNAGFEDILILATNPILRDV 180 +YEA++IDGAGRF+++ ITLP I+ I I ILAVG +LN+ F+ IL+L N + Sbjct: 221 EMYEASTIDGAGRFQKMWYITLPSIKSTISILFILAVGGVLNSNFDQILVL-RNSLNESA 279 Query: 181 SDVIDTYVYRMGILNNRFSYAAAAGLFKAVVSIGLLALANKAARKMGSS 229 S+VID +VY G+ N R+SYA A LFK+V++I LL +AN+ +K+ + Sbjct: 280 SNVIDIFVYHTGMQNGRYSYAQAVALFKSVIAIILLLIANRVTKKLNDT 328 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.144 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,305,243,190 Number of extensions: 54031262 Number of successful extensions: 210178 Number of sequences better than 1.0e-05: 3766 Number of HSP's gapped: 208949 Number of HSP's successfully gapped: 3766 Length of query: 231 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 100 Effective length of database: 1,826,543,238 Effective search space: 182654323800 Effective search space used: 182654323800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)