BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0006.p
         (47 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBE3.1 B3KBE3_9BACI Binding-protein-dependent transport system...    68   3e-10
B1DDM6.1 B1DDM6_9BACL Binding-protein-dependent transport system...    65   2e-09
B3KB74.1 B3KB74_9BACI Binding-protein-dependent transport system...    58   3e-07
B1DAG6.1 B1DAG6_9BACL Binding-protein-dependent transport system...    58   4e-07
B4BMD6.1 B4BMD6_9BACI Putative uncharacterized protein                 55   2e-06

>B3KBE3.1 B3KBE3_9BACI Binding-protein-dependent transport systems inner
          membrane component
          Length = 317

 Score = 67.8 bits (164), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 30/38 (78%), Positives = 34/38 (89%)

Query: 1  MVVPAMLFIFVFSYLPMYGVLMAFQDYQLFGGFFHSPW 38
          MV+PAM+FI VFSY+PMYGVLMAFQDY LF GF +SPW
Sbjct: 31 MVLPAMMFILVFSYIPMYGVLMAFQDYSLFKGFLNSPW 68


>B1DDM6.1 B1DDM6_9BACL Binding-protein-dependent transport systems inner
          membrane component
          Length = 319

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 32/38 (84%)

Query: 1  MVVPAMLFIFVFSYLPMYGVLMAFQDYQLFGGFFHSPW 38
          MV+PA+L IFVFSY+PMYGVL AFQDY +F GF  SPW
Sbjct: 33 MVIPALLLIFVFSYIPMYGVLTAFQDYSIFKGFLDSPW 70


>B3KB74.1 B3KB74_9BACI Binding-protein-dependent transport systems inner
          membrane component
          Length = 318

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 31/38 (81%)

Query: 1  MVVPAMLFIFVFSYLPMYGVLMAFQDYQLFGGFFHSPW 38
          MV+PA+  +FVFSY+PMYG+LMAFQD+ +F G   SPW
Sbjct: 32 MVLPALALVFVFSYIPMYGILMAFQDFNIFKGMGDSPW 69


>B1DAG6.1 B1DAG6_9BACL Binding-protein-dependent transport systems inner
          membrane component
          Length = 315

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query: 1  MVVPAMLFIFVFSYLPMYGVLMAFQDYQLFGGFFHSPW 38
          MV+PA+L  FVFSY+PM GV+MAFQDY+   GF HSPW
Sbjct: 31 MVLPAVLLSFVFSYIPMSGVVMAFQDYKARLGFLHSPW 68


>B4BMD6.1 B4BMD6_9BACI Putative uncharacterized protein
          Length = 157

 Score = 55.1 bits (131), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/38 (55%), Positives = 33/38 (86%)

Query: 1  MVVPAMLFIFVFSYLPMYGVLMAFQDYQLFGGFFHSPW 38
          M++PA++ +F+F Y+PM+G++MAFQDY+ + GF HSPW
Sbjct: 31 MLLPALVIVFIFQYIPMFGLVMAFQDYEPWLGFLHSPW 68


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.343    0.153    0.538 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 228,552,086
Number of extensions: 6109296
Number of successful extensions: 21769
Number of sequences better than 1.0e-05: 11
Number of HSP's gapped: 21772
Number of HSP's successfully gapped: 11
Length of query: 47
Length of database: 3,060,696,203
Length adjustment: 20
Effective length of query: 27
Effective length of database: 2,872,275,903
Effective search space: 77551449381
Effective search space used: 77551449381
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (22.0 bits)
S2: 126 (53.1 bits)