BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0003.p
         (353 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q01U29.1 Q01U29_SOLUE Putative uncharacterized protein                 57   3e-06
A3SDN2.1 A3SDN2_9RHOB Putative uncharacterized protein                 56   5e-06
C2VA17.1 C2VA17_BACCE Glycosyl hydrolase                               55   9e-06
C2TVJ5.1 C2TVJ5_BACCE Glycosyl hydrolase                               55   9e-06
C2UTL9.1 C2UTL9_BACCE Glycosyl hydrolase                               55   9e-06

>Q01U29.1 Q01U29_SOLUE Putative uncharacterized protein
          Length = 1009

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 112/278 (40%), Gaps = 56/278 (20%)

Query: 49  TAVAISRSDPHRYLYGLAGHGRTACIAVCRNAGGKASAVLPLGT--GLFVQALREDGVKN 106
           TAV     +P+ Y  G  G G              +   +P+G+   + V     D V  
Sbjct: 50  TAVTGVPPEPNVYYMGSTGGGVWKTTDAGHTWRPMSDGQIPVGSMGAIEVAPSSTDVVYA 109

Query: 107 GSFYAYVDGPVASGAGIYRSSDDGMTWEQTAFRPPSYMDTLPHHKT-----WIEAELLPV 161
           G+  + +   V+ G GIY+S D G+TW+ +  R    + T+  H T     W+ A   P 
Sbjct: 110 GTGSSKIRSNVSIGRGIYKSIDGGLTWKFSGLRDVGQISTIRVHPTNPDILWVAALGNPF 169

Query: 162 V-------------------VYQVKNACGSNQL---------LAASPFHQGR----ILIG 189
           V                   V  + ++ G+  L         L A  +H  R    I+ G
Sbjct: 170 VDNPERGIYKSTDGGKSWKLVLHISDSAGAADLELQPGSPNVLFACMWHGQRKPWTIISG 229

Query: 190 EWTEGIWESRDGGDTWKSIGEGLPFQRSGPASVLNAIAYSTNHPDRVYAGFISE---GLW 246
               G+++S DGGD W  +  GLP +  G A+V    A S   P+R+YA   ++   GL+
Sbjct: 230 AREGGMYKSTDGGDHWAKLAGGLPSELFGRANV----AISAASPNRIYALIEAKPGSGLY 285

Query: 247 HSSNGGRTWSKLYPLIEG------EVFNVSALAVGTDD 278
            S + G TW+    LI G        F    LAV  +D
Sbjct: 286 RSEDAGATWA----LINGSGNLITRPFYYDTLAVDPND 319


>A3SDN2.1 A3SDN2_9RHOB Putative uncharacterized protein
          Length = 307

 Score = 56.2 bits (134), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 176 LAASPFHQGRILIGEWTEGIWESRDGGDTWKSIGEGLPFQRSGPASVLNAIAYSTNHPDR 235
           +A+ P   G +       G+  SRDGG TW   G GLP  R      + A+ +S   PD 
Sbjct: 72  IASHPETPGTMFAAIDPVGLMRSRDGGSTWADAGAGLPATR------VTALTHSALEPDM 125

Query: 236 VYAGFISEGLWHSSNGGRTWSKLY--PLIEGEVFNVSALAVGTDDEGEDXXXXASEPMVV 293
           +YA    +GLW S + G +W  +   P + G    V  LA   +  G           + 
Sbjct: 126 LYAALAEDGLWRSIDAGESWEFVMDRPYLNGAEREVLTLASVGNPTGMGGI------WLY 179

Query: 294 NGTDSQVVYSRDGGCSWQ 311
            GTD+ +    D  C WQ
Sbjct: 180 AGTDAGLTRVPDCFCRWQ 197


>C2VA17.1 C2VA17_BACCE Glycosyl hydrolase
          Length = 350

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 176 LAASPFHQGRILIGEWTEGIWESRDGGDTWKSIGEG-----LPFQRSGPASVLNAIAYST 230
           +A  PF Q RI  G +  G+W S DGGD+W+ IG+       P +     S + +I  S 
Sbjct: 29  IAVDPFQQNRIYCGTFGRGLWLSDDGGDSWRPIGDSYRYFDFPKEDGILHSSITSITISP 88

Query: 231 NHPDR----VYAGFISEGLWHSSNGGRTWSKL 258
           N        VY G     L+ S NGG TW++L
Sbjct: 89  NEQVNEYGVVYVGTEPSALFRSENGGETWTEL 120


>C2TVJ5.1 C2TVJ5_BACCE Glycosyl hydrolase
          Length = 350

 Score = 55.5 bits (132), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 176 LAASPFHQGRILIGEWTEGIWESRDGGDTWKSIGEG-----LPFQRSGPASVLNAIAYST 230
           +A  PF Q RI  G +  G+W S DGGD+W+ IG+       P +     S + +I  S 
Sbjct: 29  IAVDPFQQNRIYCGTFGRGLWLSDDGGDSWRPIGDSYRYFDFPKEDGILHSSITSITISP 88

Query: 231 NHPDR----VYAGFISEGLWHSSNGGRTWSKL 258
           N        VY G     L+ S NGG TW++L
Sbjct: 89  NEQVNEYGVVYVGTEPSALFRSENGGETWTEL 120


>C2UTL9.1 C2UTL9_BACCE Glycosyl hydrolase
          Length = 350

 Score = 55.1 bits (131), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 45/92 (48%), Gaps = 9/92 (9%)

Query: 176 LAASPFHQGRILIGEWTEGIWESRDGGDTWKSIGEG-----LPFQRSGPASVLNAIAYST 230
           +A  PF Q RI  G +  G+W S DGGD+W+ IG+       P +     S + +I  S 
Sbjct: 29  IAVDPFQQNRIYCGTFGRGLWLSDDGGDSWRPIGDSYRYFDFPKEDGILHSSITSITISP 88

Query: 231 NHPDR----VYAGFISEGLWHSSNGGRTWSKL 258
           N        VY G     L+ S NGG TW++L
Sbjct: 89  NEQVNRYGVVYVGTEPSALFRSENGGETWTEL 120


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.136    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 2,497,310,612
Number of extensions: 113556139
Number of successful extensions: 233057
Number of sequences better than 1.0e-05: 41
Number of HSP's gapped: 233355
Number of HSP's successfully gapped: 41
Length of query: 353
Length of database: 3,060,696,203
Length adjustment: 137
Effective length of query: 216
Effective length of database: 1,770,017,148
Effective search space: 382323703968
Effective search space used: 382323703968
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)