BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0548.0002.p (402 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5WV38.1 B5WV38_9BURK Glycosyl hydrolase BNR repeat-containing p... 95 1e-17 A2VY56.1 A2VY56_9BURK Putative uncharacterized protein 86 6e-15 B1YYN0.1 B1YYN0_BURA4 Glycosyl hydrolase BNR repeat-containing p... 86 9e-15 A0LP13.1 A0LP13_SYNFM Putative uncharacterized protein 82 6e-14 Q8PLM5.1 Q8PLM5_XANAC Cellulase 78 2e-12 >B5WV38.1 B5WV38_9BURK Glycosyl hydrolase BNR repeat-containing protein Length = 771 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 78/155 (50%), Gaps = 4/155 (2%) Query: 12 WSPASLGGGGYITGLIQHPAQSGVLYARCDVAGGGXXXXXXXXXXXXXXXLG----KAYH 67 W+ GGGGY+TGLI HP + +LY R DV G LG + + Sbjct: 53 WTSVKWGGGGYVTGLIYHPTNASLLYVRTDVGGAYRWDTTTSSWIPLTDGLGFGAGEGRY 112 Query: 68 HQVQSFAISPHRPEVLFRCSGEVRGRTFCGSVHKSADGGHTWREVCTGMGFYGNGPTRMY 127 H V+S A+ P+ ++++ +G+ G+ G ++ S+D G+TW GN R Y Sbjct: 113 HGVESIALDPNNDQLVYMMTGDTVGQDAHGRIYISSDRGNTWTHYDLPFAVGGNDNARGY 172 Query: 128 GEVIAVDPHHPEIVAAGGYTGGLWISRDEGESWMR 162 GE ++VDP +P + G G+W S D G++W + Sbjct: 173 GERLSVDPQNPSTLMFGSRKAGIWKSTDSGQTWSQ 207 >A2VY56.1 A2VY56_9BURK Putative uncharacterized protein Length = 812 Score = 85.9 bits (211), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 4/155 (2%) Query: 12 WSPASLGGGGYITGLIQHPAQSGVLYARCDVAGGGXXXXXXXXXXXXXXXLG----KAYH 67 W+ GGGGY+TGLI HP + +LYAR DV G +G + Sbjct: 93 WTSVKWGGGGYVTGLIYHPTNASLLYARTDVGGAYRWNAASSTWTPITDGIGFGAGEGDF 152 Query: 68 HQVQSFAISPHRPEVLFRCSGEVRGRTFCGSVHKSADGGHTWREVCTGMGFYGNGPTRMY 127 H V+S A+ P+ ++++ +G + G ++ S+D G+TW GN R Sbjct: 153 HGVESLALDPNDDQLVYMMTGITVTQGHNGRIYISSDRGNTWTHYDLPFPVGGNDNGRAT 212 Query: 128 GEVIAVDPHHPEIVAAGGYTGGLWISRDEGESWMR 162 GE + VDP++P + G T GLW S D G +W + Sbjct: 213 GERLQVDPNNPSTLFYGSRTAGLWKSADSGRTWSQ 247 >B1YYN0.1 B1YYN0_BURA4 Glycosyl hydrolase BNR repeat-containing protein Length = 778 Score = 85.5 bits (210), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 50/155 (32%), Positives = 75/155 (48%), Gaps = 4/155 (2%) Query: 12 WSPASLGGGGYITGLIQHPAQSGVLYARCDVAGGGXXXXXXXXXXXXXXXLG----KAYH 67 W+ GGGGY+TGLI HPA + +LYAR DV G +G + Sbjct: 59 WTSVKWGGGGYVTGLIYHPANASLLYARTDVGGAYRWNATNSTWTPITDGIGFGSGEGDF 118 Query: 68 HQVQSFAISPHRPEVLFRCSGEVRGRTFCGSVHKSADGGHTWREVCTGMGFYGNGPTRMY 127 H V+S A+ P+ ++++ +G + G ++ S++ G TW GN R Sbjct: 119 HGVESLALDPNNDQLVYIMTGITVTQGHNGRIYISSNRGDTWTHYDLPFPVGGNDNGRAT 178 Query: 128 GEVIAVDPHHPEIVAAGGYTGGLWISRDEGESWMR 162 GE + VDP++P + G T GLW S D G +W + Sbjct: 179 GERLQVDPNNPSTLFYGSRTAGLWKSADSGRTWTQ 213 >A0LP13.1 A0LP13_SYNFM Putative uncharacterized protein Length = 681 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 81/319 (25%), Positives = 126/319 (39%), Gaps = 79/319 (24%) Query: 2 AGIPPETGQVWSPASLGGGGYITGLIQHPAQSGVLYARCDVAGGGXXXXXXXXXXXXXXX 61 AGI PE GGYI + +P+ V+YA D GGG Sbjct: 53 AGIGPE------------GGYIGAVAVNPSNPNVVYAGSD--GGGVFKSTNGGGSWNQKN 98 Query: 62 LGKAYHHQVQSFAISPHRPEVLFRCSGEVRGRTFCGSVHKSADGGHTWREVCTGMGFYGN 121 G +V A++P P V++ T G V KS +GG +W + +G+ Sbjct: 99 SGLT-STKVHCLAVNPSNPNVVYA-------GTMGGGVFKSTNGGGSWTQKSSGLTV--- 147 Query: 122 GPTRMYGEVIAVDPHHPEIVAAGGYTGGLWISRDEGESWMR--TPLPEDRYGCVAFHPGI 179 + +Y +AV+P +P ++ AG Y GG++ S D G SW R + L E +A +P Sbjct: 148 --SSIYS--LAVNPSNPNVIYAGTYGGGVFKSTDGGGSWTRKNSGLTETFIYALAVNPSN 203 Query: 180 PGMLYAGTISDEDLNMDYAETGEGGVLGLLQDLPRGNAGRLYASSDLGDTWMLLHEGPSF 239 P ++YAGT G ++ S++ G +W + G + Sbjct: 204 PNVIYAGTW----------------------------GGGVFKSTNGGGSWTQKNSGLTA 235 Query: 240 AE---LAFDSRDPQRLMAACIWNGICSSPDGGRNWQTNMAGLPE---------------- 280 + LA + +P + A G+ S DGG +W +GL Sbjct: 236 TKIYCLAVNPSNPSIIYAGTYGEGVFKSTDGGGSWTQKNSGLTATYVYCLAIDPSHGNII 295 Query: 281 -AGQRYGSVVQDSHQPQRW 298 AG YG V + ++Q W Sbjct: 296 YAGAWYGGVFKSTNQGGSW 314 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 35/234 (14%) Query: 69 QVQSFAISPHRPEVLFRCSGEVRGRTFCGSVHKSADGGHTWREVCTGMGFYGNGPTRMYG 128 ++ A++P P +++ T+ V KS DGG +W + +G+ T Y Sbjct: 237 KIYCLAVNPSNPSIIYA-------GTYGEGVFKSTDGGGSWTQKNSGL-------TATYV 282 Query: 129 EVIAVDPHHPEIVAAGGYTGGLWISRDEGESWMR--TPLPEDRYGCVAFHPGIPGMLYAG 186 +A+DP H I+ AG + GG++ S ++G SW + + + +A P P ++YAG Sbjct: 283 YCLAIDPSHGNIIYAGAWYGGVFKSTNQGGSWTQKISGFTANSANLLAVSPSSPNIIYAG 342 Query: 187 T-----ISDEDLNMDYAETGEG----GVLGLLQD------LPRGNAGR-LYASSDLGDTW 230 + + D ++ G GV ++ D L G G ++ S++ G +W Sbjct: 343 SDSGGVLKSTDRAGSWSRKNSGLTATGVASIVVDPLTPATLYAGTWGEGVFKSTNGGGSW 402 Query: 231 MLLHEGPSFA---ELAFDSRDPQRLMAACIWNGICSSPDGGRNWQTNMAGLPEA 281 + G + LA + +P + A G+ S DGG +W +GL E+ Sbjct: 403 TRKNSGLAVGYIYALAVNPSNPNVIYAGTSGGGVFKSTDGGGSWTQKNSGLTES 456 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/252 (26%), Positives = 104/252 (41%), Gaps = 37/252 (14%) Query: 69 QVQSFAISPHRPEVLFRCSGEVRGRTFCGSVHKSADGGHTWREVCTGMGFYGNGPTRMYG 128 + S A++P P V++ T+ G V KS DGG +W +G+ T + Sbjct: 149 SIYSLAVNPSNPNVIYA-------GTYGGGVFKSTDGGGSWTRKNSGL-------TETFI 194 Query: 129 EVIAVDPHHPEIVAAGGYTGGLWISRDEGESWMR--TPLPEDRYGCVAFHPGIPGMLYAG 186 +AV+P +P ++ AG + GG++ S + G SW + + L + C+A +P P ++YAG Sbjct: 195 YALAVNPSNPNVIYAGTWGGGVFKSTNGGGSWTQKNSGLTATKIYCLAVNPSNPSIIYAG 254 Query: 187 T-----ISDEDLNMDYAETGEG----GVLGLLQDLPRGNA-------GRLYASSDLGDTW 230 T D + + G V L D GN G ++ S++ G +W Sbjct: 255 TYGEGVFKSTDGGGSWTQKNSGLTATYVYCLAIDPSHGNIIYAGAWYGGVFKSTNQGGSW 314 Query: 231 MLLHEG---PSFAELAFDSRDPQRLMAACIWNGICSSPDGGRNWQTNMAGLPEAGQRYGS 287 G S LA P + A G+ S D +W +GL G S Sbjct: 315 TQKISGFTANSANLLAVSPSSPNIIYAGSDSGGVLKSTDRAGSWSRKNSGLTATGVA--S 372 Query: 288 VVQDSHQPQRWY 299 +V D P Y Sbjct: 373 IVVDPLTPATLY 384 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 63/263 (23%), Positives = 102/263 (38%), Gaps = 50/263 (19%) Query: 21 GYITGLIQHPAQSGVLYARCDVAGGGXXXXXXXXXXXXXXXLGKAYHHQVQSFAISPHRP 80 GYI L +P+ V+YA +GGG G + + A++P P Sbjct: 412 GYIYALAVNPSNPNVIYA--GTSGGGVFKSTDGGGSWTQKNSGLT-ESFINALAVNPSNP 468 Query: 81 EVLFRCSGEVRGRTFCGSVHKSADGGHTWREVCTGMGFYGNGPTRMYGEVIAVDPHHPEI 140 V++ T V KS +GG +W + +G+ T +AV+P +P + Sbjct: 469 NVIYA-------GTDGAGVFKSTNGGGSWTQKNSGL-------TESCISALAVNPSNPNV 514 Query: 141 VAAGGYTGGLWISRDEGESWMR--TPLPEDRYGCVAFHPGIPGMLYAGTISDEDLNMDYA 198 + AG GG++ S + G SW + + L C+ +P P ++YAG Sbjct: 515 IYAGTAGGGVFKSANGGGSWTQKNSGLSAPLISCLVVNPSNPNVIYAGAY---------- 564 Query: 199 ETGEGGVLGLLQDLPRGNAGRLYASSDLGDTWMLLHEGPS---FAELAFDSRDPQRLMAA 255 G ++ S++ G W L G + LA D +P + A Sbjct: 565 ------------------YGGIFKSTNAGGNWALKDSGLTTNDIYSLAVDPSNPNVIYAG 606 Query: 256 CIWNGICSSPDGGRNWQTNMAGL 278 G+ S +GG NW +GL Sbjct: 607 TGDRGVFKSTNGGGNWTPANSGL 629 Score = 59.7 bits (143), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/233 (24%), Positives = 91/233 (39%), Gaps = 35/233 (15%) Query: 70 VQSFAISPHRPEVLFRCSGEVRGRTFCGSVHKSADGGHTWREVCTGMGFYGNGPTRMYGE 129 V AI P +++ + + G V KS + G +W + +G T Sbjct: 282 VYCLAIDPSHGNIIYAGA-------WYGGVFKSTNQGGSWTQKISGF-------TANSAN 327 Query: 130 VIAVDPHHPEIVAAGGYTGGLWISRDEGESWMR--TPLPEDRYGCVAFHPGIPGMLYAGT 187 ++AV P P I+ AG +GG+ S D SW R + L + P P LYAGT Sbjct: 328 LLAVSPSSPNIIYAGSDSGGVLKSTDRAGSWSRKNSGLTATGVASIVVDPLTPATLYAGT 387 Query: 188 -----ISDEDLNMDYAETGEGGVLGLLQDLPRG-----------NAGRLYASSDLGDTWM 231 + + G +G + L + G ++ S+D G +W Sbjct: 388 WGEGVFKSTNGGGSWTRKNSGLAVGYIYALAVNPSNPNVIYAGTSGGGVFKSTDGGGSWT 447 Query: 232 LLHEG--PSFAE-LAFDSRDPQRLMAACIWNGICSSPDGGRNWQTNMAGLPEA 281 + G SF LA + +P + A G+ S +GG +W +GL E+ Sbjct: 448 QKNSGLTESFINALAVNPSNPNVIYAGTDGAGVFKSTNGGGSWTQKNSGLTES 500 >Q8PLM5.1 Q8PLM5_XANAC Cellulase Length = 751 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/245 (26%), Positives = 95/245 (38%), Gaps = 35/245 (14%) Query: 12 WSPASLGGGGYITGLIQHPAQSGVLYARCDVAGGGXXXXXXXXXXXXXXXLGKAYHHQ-- 69 W ++GGGG++TG++ HPA+ + YAR DV G LG + Sbjct: 49 WHSVAIGGGGFVTGVLFHPAERDLAYARTDVGGAYRWDAQAQQWVALTDWLGADDWNLMG 108 Query: 70 VQSFAISPHRPEVLFRCSGE-VRGRTFCGSVHKSADGGHTWREVCTGMGFYGNGPTRMYG 128 + +FA+ P P L+ +G + R +V +S D G + GN R G Sbjct: 109 IDAFAVDPADPNALYLAAGTYMHERAGNAAVLRSFDRGKQFERADLPFKLGGNQLGRANG 168 Query: 129 EVIAVDPHHPEIVAAGGYTGGLWISRDEGESWMRTPLPEDRYGCVAFHPGIPGMLYAGTI 188 E +AVDPH ++ G GLW S D G W R G P AG Sbjct: 169 ERLAVDPHDGRVLLLGSRDAGLWRSDDRGAHWARV-------------EGFPADALAGAT 215 Query: 189 SDEDLNMDYAETGEGGVLGLLQDLPRGNAG---------------RLYASSDLGDTWMLL 233 + + + A G+ ++ D G+AG LY S D G TW + Sbjct: 216 ARNHVGSEQAV----GIAFVVFDAASGHAGAATPRIYVGVSTAQTSLYVSEDAGRTWSAV 271 Query: 234 HEGPS 238 P Sbjct: 272 AGQPK 276 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.139 0.457 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,739,721,518 Number of extensions: 130083581 Number of successful extensions: 214297 Number of sequences better than 1.0e-05: 101 Number of HSP's gapped: 214189 Number of HSP's successfully gapped: 115 Length of query: 402 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 264 Effective length of database: 1,760,596,133 Effective search space: 464797379112 Effective search space used: 464797379112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)