BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0548.0001.p
         (41 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A5KLI9.1 A5KLI9_9FIRM Putative uncharacterized protein                 87   7e-16
B5CLQ2.1 B5CLQ2_9FIRM Putative uncharacterized protein                 86   9e-16
C2E8R8.1 C2E8R8_9LACO Possible transcriptional regulator               86   1e-15
C0FZR4.1 C0FZR4_9FIRM Putative uncharacterized protein                 86   1e-15
C0EYU6.1 C0EYU6_9FIRM Putative uncharacterized protein                 86   1e-15

>A5KLI9.1 A5KLI9_9FIRM Putative uncharacterized protein
          Length = 68

 Score = 86.7 bits (213), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 40/41 (97%), Positives = 41/41 (100%)

Query: 1  MVGVSRNTISSIETGQFNPTAKLALIICIALDKKFEEMFYF 41
          MVGVSRNTISSIETGQFNPTAKLALIICIALDKKFEE+FYF
Sbjct: 28 MVGVSRNTISSIETGQFNPTAKLALIICIALDKKFEELFYF 68


>B5CLQ2.1 B5CLQ2_9FIRM Putative uncharacterized protein
          Length = 68

 Score = 86.3 bits (212), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 39/41 (95%), Positives = 41/41 (100%)

Query: 1  MVGVSRNTISSIETGQFNPTAKLALIICIALDKKFEEMFYF 41
          MVGVSRNTISSIETGQFNPTAKLALI+CIALDKKFEE+FYF
Sbjct: 28 MVGVSRNTISSIETGQFNPTAKLALILCIALDKKFEELFYF 68


>C2E8R8.1 C2E8R8_9LACO Possible transcriptional regulator
          Length = 68

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/41 (95%), Positives = 41/41 (100%)

Query: 1  MVGVSRNTISSIETGQFNPTAKLALIICIALDKKFEEMFYF 41
          MVGVSRNTISSIETGQFNPTAKLALI+CIALDKKFEE+FYF
Sbjct: 28 MVGVSRNTISSIETGQFNPTAKLALILCIALDKKFEELFYF 68


>C0FZR4.1 C0FZR4_9FIRM Putative uncharacterized protein
          Length = 68

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/41 (95%), Positives = 41/41 (100%)

Query: 1  MVGVSRNTISSIETGQFNPTAKLALIICIALDKKFEEMFYF 41
          MVGVSRNTISSIETGQFNPTAKLALI+CIALDKKFEE+FYF
Sbjct: 28 MVGVSRNTISSIETGQFNPTAKLALILCIALDKKFEELFYF 68


>C0EYU6.1 C0EYU6_9FIRM Putative uncharacterized protein
          Length = 68

 Score = 85.9 bits (211), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 39/41 (95%), Positives = 41/41 (100%)

Query: 1  MVGVSRNTISSIETGQFNPTAKLALIICIALDKKFEEMFYF 41
          MVGVSRNTISSIETGQFNPTAKLALI+CIALDKKFEE+FYF
Sbjct: 28 MVGVSRNTISSIETGQFNPTAKLALILCIALDKKFEELFYF 68


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.326    0.139    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 201,889,460
Number of extensions: 3834216
Number of successful extensions: 13795
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 13795
Number of HSP's successfully gapped: 39
Length of query: 41
Length of database: 3,060,696,203
Length adjustment: 15
Effective length of query: 26
Effective length of database: 2,919,380,978
Effective search space: 75903905428
Effective search space used: 75903905428
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 125 (52.8 bits)