BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0066.p
         (122 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K3T3.1 B3K3T3_9BACI Putative uncharacterized protein                 53   9e-06

>B3K3T3.1 B3K3T3_9BACI Putative uncharacterized protein
          Length = 158

 Score = 52.8 bits (125), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 44/128 (34%), Positives = 62/128 (48%), Gaps = 11/128 (8%)

Query: 1   LGDIGLQVAAVLATPNAADVRVELAGTIGV-----AGVAANTVTITIERXXXXXXXXXXX 55
           +GDIGLQ    L T N  DVRV L+GT+ +        A +++T+ IER           
Sbjct: 32  IGDIGLQTIPALGTVNVTDVRVWLSGTVSLLRPATTEAAPSSMTLLIERDGSGTPGSGTI 91

Query: 56  XXXXXXD---LYTGRNLISFNAADFHP-PVPLTGEIRYSMYAFNSGTPEPVITITGPVVF 111
                 D   L      IS    DF P  V   G IRY++Y  ++G  E  + ++GPV F
Sbjct: 92  IYEQVVDPGNLSFNMFPISLTTGDFPPTAVVNQGLIRYTLYIVSAG--ENSLLLSGPVSF 149

Query: 112 NGVAQAGT 119
           +G+A AG+
Sbjct: 150 SGIAVAGS 157


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.134    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 599,330,616
Number of extensions: 18671739
Number of successful extensions: 42688
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 42689
Number of HSP's successfully gapped: 1
Length of query: 122
Length of database: 3,060,696,203
Length adjustment: 88
Effective length of query: 34
Effective length of database: 2,231,646,883
Effective search space: 75875994022
Effective search space used: 75875994022
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)