BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0063.p
         (154 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1BDX1.1 B1BDX1_CLOBO Putative rubrerythrin subfamily                 127   3e-28
A0PZV1.1 A0PZV1_CLONN Putative uncharacterized protein                125   1e-27
C1I6R3.1 C1I6R3_9CLOT Rubrerythrin                                    122   7e-27
A6LYF6.1 A6LYF6_CLOB8 Rubrerythrin                                    107   4e-22
A4J4M3.1 A4J4M3_DESRM Putative uncharacterized protein                101   2e-20

>B1BDX1.1 B1BDX1_CLOBO Putative rubrerythrin subfamily
          Length = 283

 Score =  127 bits (319), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 58/110 (52%), Positives = 80/110 (72%)

Query: 23  DALELMRNSVQGERNDELFYDQLIQLAPNPEQAEVITSIRNDERGHNQMFRQMYRELTGH 82
           +AL L+++SV GE+ DE+FYD LI LAPN +Q ++I +IRNDER HN+MF+ +Y+++TG 
Sbjct: 20  EALSLIKSSVSGEKEDEMFYDYLITLAPNDKQKDIIITIRNDERKHNKMFKNIYKDITGK 79

Query: 83  EVTGVSNEAPEQVTSYTAGLQKAFQGELSAVEKYRKIWFGLPYGVYKDTL 132
           +V     E   +  SY  G++KA  GELSAVEKYRKI   LPY +Y+D L
Sbjct: 80  DVVIEKEEKFVEPKSYIKGIEKALFGELSAVEKYRKIMAALPYTMYRDML 129


>A0PZV1.1 A0PZV1_CLONN Putative uncharacterized protein
          Length = 281

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/110 (51%), Positives = 80/110 (72%)

Query: 23  DALELMRNSVQGERNDELFYDQLIQLAPNPEQAEVITSIRNDERGHNQMFRQMYRELTGH 82
           +AL L+++SV GE+ DE+FYD LI LAP  +Q ++I +IR+DER HN+MFR +Y+++TG 
Sbjct: 20  EALSLIKSSVSGEKEDEMFYDYLISLAPTDKQKDIIITIRDDERKHNKMFRNIYKDITGK 79

Query: 83  EVTGVSNEAPEQVTSYTAGLQKAFQGELSAVEKYRKIWFGLPYGVYKDTL 132
           +V     E   +  SY AG++KA  GELSAVEKYRKI   LPY +Y+D +
Sbjct: 80  DVVIEKEEKFVEPKSYIAGVEKALFGELSAVEKYRKIMADLPYTIYRDMV 129


>C1I6R3.1 C1I6R3_9CLOT Rubrerythrin
          Length = 239

 Score =  122 bits (307), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 56/109 (51%), Positives = 79/109 (72%)

Query: 24  ALELMRNSVQGERNDELFYDQLIQLAPNPEQAEVITSIRNDERGHNQMFRQMYRELTGHE 83
           AL+ +R +VQGER DELFYD LI LAP  ++ E+I SIRNDER HNQ+FR++Y++ TG+E
Sbjct: 17  ALDEIRKAVQGEREDELFYDYLISLAPTKDEKEIIESIRNDERKHNQLFRKIYKDFTGNE 76

Query: 84  VTGVSNEAPEQVTSYTAGLQKAFQGELSAVEKYRKIWFGLPYGVYKDTL 132
           +  ++ E  ++ +S+  G++ A  GEL AV+KY+ I   LP G YKD L
Sbjct: 77  INTMNEENLKKPSSFMDGIRTALFGELKAVDKYKAIRRALPIGAYKDML 125


>A6LYF6.1 A6LYF6_CLOB8 Rubrerythrin
          Length = 263

 Score =  107 bits (267), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 55/111 (49%), Positives = 74/111 (66%), Gaps = 2/111 (1%)

Query: 24  ALELMRNSVQGERNDELFYDQLIQLAPNPEQAEVITSIRNDERGHNQMFRQMYRELTGHE 83
           A++ ++ ++QGER DELFYD LI  AP  E+ E+I+SIR+DER HN +FR +Y + TG  
Sbjct: 23  AIQGVKKAIQGEREDELFYDYLISEAPTNEEKEIISSIRDDERRHNMLFRGIYEDFTGDM 82

Query: 84  VTGVSNEAP--EQVTSYTAGLQKAFQGELSAVEKYRKIWFGLPYGVYKDTL 132
              +  E    E   SY  G++KA  GEL+AVE+YR I  GLP GVY+D L
Sbjct: 83  DATMEGEEENFEVPESYLEGIKKALFGELAAVERYRVIRRGLPEGVYRDVL 133


>A4J4M3.1 A4J4M3_DESRM Putative uncharacterized protein
          Length = 201

 Score =  101 bits (252), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/126 (39%), Positives = 79/126 (62%), Gaps = 1/126 (0%)

Query: 7   YWFRSQFVPIWATSTPDALELMRNSVQGERNDELFYDQLIQLAPNPEQAEVITSIRNDER 66
           Y +   ++ +   + P++L L+  SV GER DELFY+ ++ +AP   Q +++ SIR+DE 
Sbjct: 48  YKYHPTYMYVAQYAYPESLRLIVESVSGEREDELFYNYMVSIAPA-GQKDIVASIRDDEI 106

Query: 67  GHNQMFRQMYRELTGHEVTGVSNEAPEQVTSYTAGLQKAFQGELSAVEKYRKIWFGLPYG 126
            HN+M R++Y ELTG E+    N   +   SY  G+  A  GEL+AVE+YRKI +GL + 
Sbjct: 107 KHNKMLRELYWELTGQEIPPAQNNTFQPPQSYCEGITSALFGELAAVERYRKILYGLEFL 166

Query: 127 VYKDTL 132
            Y++ +
Sbjct: 167 PYRNMI 172


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.134    0.408 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 850,990,546
Number of extensions: 30189296
Number of successful extensions: 79199
Number of sequences better than 1.0e-05: 16
Number of HSP's gapped: 79199
Number of HSP's successfully gapped: 16
Length of query: 154
Length of database: 3,060,696,203
Length adjustment: 116
Effective length of query: 38
Effective length of database: 1,967,858,463
Effective search space: 74778621594
Effective search space used: 74778621594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)