BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0057.p
         (49 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C5DAP9.1 C5DAP9_9BACI Putative uncharacterized protein                 65   3e-09
B3KGH2.1 B3KGH2_9BACI Uncharacterized protein                          61   4e-08
B1DHT8.1 B1DHT8_9BACL Putative uncharacterized protein                 58   3e-07

>C5DAP9.1 C5DAP9_9BACI Putative uncharacterized protein
          Length = 77

 Score = 64.7 bits (156), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 29/49 (59%), Positives = 36/49 (73%)

Query: 1  VLDYQQALQEVQAGAIAGVNVFKGRDGEMYIRGDADGDPTNNLDQLPQF 49
          VL Y++AL EV+ GAI GV++    DGE YIR + DGD +NNLDQLP F
Sbjct: 28 VLSYRKALMEVENGAITGVHIVTEHDGEQYIRSNPDGDASNNLDQLPTF 76


>B3KGH2.1 B3KGH2_9BACI Uncharacterized protein
          Length = 76

 Score = 60.8 bits (146), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 36/49 (73%)

Query: 1  VLDYQQALQEVQAGAIAGVNVFKGRDGEMYIRGDADGDPTNNLDQLPQF 49
          V+DY+ A Q  +   I  +NVF+GRDG+ ++R +ADGDP+NNLD LP F
Sbjct: 28 VVDYKTAQQMAKNKEIKNLNVFRGRDGDEHLRSNADGDPSNNLDNLPTF 76


>B1DHT8.1 B1DHT8_9BACL Putative uncharacterized protein
          Length = 77

 Score = 57.8 bits (138), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 34/49 (69%)

Query: 1  VLDYQQALQEVQAGAIAGVNVFKGRDGEMYIRGDADGDPTNNLDQLPQF 49
          V+DY+ A   V+   IAG+NVFKGRD E ++R +ADG   NNLD LP F
Sbjct: 29 VVDYKTAQSMVKNNEIAGLNVFKGRDHEDHLRSNADGRKDNNLDNLPTF 77


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.139    0.400 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 325,321,023
Number of extensions: 9569388
Number of successful extensions: 21909
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 21982
Number of HSP's successfully gapped: 3
Length of query: 49
Length of database: 3,060,696,203
Length adjustment: 22
Effective length of query: 27
Effective length of database: 2,853,433,873
Effective search space: 77042714571
Effective search space used: 77042714571
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)