BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0055.p (192 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGH3.1 B3KGH3_9BACI Beta-lactamase domain protein 201 4e-50 B1DHT7.1 B1DHT7_9BACL Beta-lactamase domain protein 155 1e-36 P72950.1 P72950_SYNY3 Sll0647 protein 79 2e-13 B5VZN4.1 B5VZN4_SPIMA Beta-lactamase domain protein 74 7e-12 B4B1M4.1 B4B1M4_9CHRO Beta-lactamase domain protein 74 9e-12 >B3KGH3.1 B3KGH3_9BACI Beta-lactamase domain protein Length = 245 Score = 201 bits (510), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 98/187 (52%), Positives = 128/187 (68%) Query: 1 MTIYLQMLGTGDAFSTKYYNNNAVLQDHGYTLLIDCGVTAPQAIKALGKSFQEVTETLIT 60 MT+ LQMLGTG AF+ YYNNNA++ D +TLLIDCG+TAP A+ + K+F +V LIT Sbjct: 1 MTLTLQMLGTGSAFAKNYYNNNALIHDGNFTLLIDCGITAPLALHQMNKTFNDVDAVLIT 60 Query: 61 HIHGDHIGGLAELAGTPSQEPHGKMTLLLAETLIEPLWQHPLLEPLHRKGDSRSLADVFN 120 HIH DH+GGL ELA + K+ L +AE L+EP+W+H L L+++G SL DVF+ Sbjct: 61 HIHADHVGGLEELAFIMKMKYDRKLPLYIAEALVEPIWEHTLKGGLYQQGHISSLQDVFD 120 Query: 121 VKPLKPDTPYTLSPSLTLELIRTPHMPGKASYSLLLNECVFYSADLTFQPELLLHLVHNR 180 V PLKP +S +++ELI T H+PGK SYSL LN+ +FYSAD+ F P LL LV+ R Sbjct: 121 VHPLKPGVRAAISSGISVELIHTQHIPGKDSYSLYLNDRIFYSADMVFDPILLKQLVNER 180 Query: 181 GITKILH 187 ILH Sbjct: 181 DCEVILH 187 >B1DHT7.1 B1DHT7_9BACL Beta-lactamase domain protein Length = 249 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 79/192 (41%), Positives = 118/192 (61%), Gaps = 12/192 (6%) Query: 1 MTIYLQMLGTGDAFSTKYYNNNAVLQDHGYTLLIDCGVTAPQAIKALGKSFQEVTETLIT 60 +++ +QMLGTG AF+ KY NNNA++ G+ LL+DCG+T P+++ G SF ++ LI+ Sbjct: 5 LSLQIQMLGTGGAFAKKYSNNNALIAVDGFKLLVDCGITLPRSLHDAGYSFDDLNAVLIS 64 Query: 61 HIHGDHIGGLAELAGTPSQEPHGKMTLLLAETLIEPLWQHPLL-----EPLHRKGDSRSL 115 H+H DH+GGL E A + L +A+TL++PLW+ L EPL+ +L Sbjct: 65 HMHADHVGGLEEYAFQMMFRYGKRPVLYIADTLVDPLWEQTLRGGLTQEPLN------AL 118 Query: 116 ADVFNVKPLKPDTPYTLSPSLTLELIRTPHMPGKASYSLLLNECVFYSADLTFQPELLLH 175 +D F+V+P+K + P + ++LIRT H+ GK SYS L NE FYSAD+ F LL Sbjct: 119 SDFFDVRPIKEGESCEIHPGIHVKLIRTDHIAGKLSYSFLFNETFFYSADMKFDGGLLKE 178 Query: 176 LVHNRGITKILH 187 L+ G+T + H Sbjct: 179 LIAG-GVTTVFH 189 >P72950.1 P72950_SYNY3 Sll0647 protein Length = 256 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/194 (28%), Positives = 93/194 (47%), Gaps = 13/194 (6%) Query: 1 MTIYLQMLGTGDAFST--KYYNNNAVLQ-DHGYTLLIDCGVTAPQAIKALGKSFQEVTET 57 M L LG+G AF+ + +NA+L D+G LIDCG ++ ALG S +++T+ Sbjct: 1 MAANLTFLGSGSAFTVGADNFQSNAILTLDNGKKFLIDCGTDIRFSLYALGLSHRDITDI 60 Query: 58 LITHIHGDHIGGLAELAGTPSQEPH-GKMTLLLAETLIEPLWQHPLLEPLHR-KGDSRSL 115 ++H+H DH+GGL + + +P+ GK L L++ + LW+ L + +G + Sbjct: 61 YVSHLHSDHVGGLEYVGFSTMFDPNCGKPNLYLSQDIAADLWERSLAGGMEAIEGGMTEV 120 Query: 116 ADVFNVKPLKPDTPYTLSPSLTLELIRTPH-------MPGKASYSLLLNECVFYSADLTF 168 F + L P +T ++ +LI+ H MP + + + VF+S D F Sbjct: 121 DSYFQIHALGPGETFTWE-NVNFQLIKLNHVDTGSMLMPAYGLFFTVNHFQVFFSNDTKF 179 Query: 169 QPELLLHLVHNRGI 182 + L H I Sbjct: 180 SYDRLQEYFHRADI 193 >B5VZN4.1 B5VZN4_SPIMA Beta-lactamase domain protein Length = 265 Score = 73.9 bits (180), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 13/181 (7%) Query: 5 LQMLGTGDAFST---KYYNNNAVLQDHGYTLLIDCGVTAPQAIKALGKSFQEVTETLITH 61 L LG+G AF+ + +N ++ ++ LLIDCG ++ LG S+++VT+ I+H Sbjct: 3 LIFLGSGSAFTVGADNFQSNMMLVAENNRKLLIDCGSDLRHSLYQLGWSYRDVTDIYISH 62 Query: 62 IHGDHIGGLAELAGTPSQEPH-GKMTLLLAETLIEPLWQHPLLEPLHR-KGDSRSLADVF 119 IH DH GGL + T +P+ + L L++ L++ +W + L + + D +L F Sbjct: 63 IHADHTGGLEYMGFTTKFDPNCSRPKLYLSQELVDLVWNNCLAGSMTSIEDDLATLETYF 122 Query: 120 NVKPLKPDTPYTLSPSLTLELIRTPHMPGK----ASYSLLLNEC---VFYSADLTFQPEL 172 +++P+ P + +T + L+ T H+ K SY L + VF + D + P+ Sbjct: 123 DIEPISPGSGFTWE-GVDFTLVPTIHIQDKYQDVPSYGLSFSVGGVEVFLTTDTKYCPQK 181 Query: 173 L 173 L Sbjct: 182 L 182 >B4B1M4.1 B4B1M4_9CHRO Beta-lactamase domain protein Length = 257 Score = 73.6 bits (179), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 87/171 (50%), Gaps = 8/171 (4%) Query: 2 TIYLQMLGTGDAF---STKYYNNNAVLQDHGYTLLIDCGVTAPQAIKALGKSFQEVTETL 58 ++ L LG+G AF S + +N ++ + LLIDCG ++ +G S+ +T+ Sbjct: 4 SMKLLFLGSGSAFTVGSNNFQSNMLLITEEDKKLLIDCGSDIRFSLHEVGLSYANITDIY 63 Query: 59 ITHIHGDHIGGLAELAGTPSQEPHG-KMTLLLAETLIEPLWQHPLLEPLHR-KGDSRSLA 116 I+H+H DH+GGL + +P K L L++ + +W L + +GD ++L Sbjct: 64 ISHLHSDHVGGLEYIGLASKFDPRCQKPNLYLSKDIASEIWDRTLAGGMRFVEGDLKTLN 123 Query: 117 DVFNVKPLKPDTPYTLSPSLTLELIRTPHMPGKASYSLLLNECVFYSADLT 167 F + P+KP+ Y + +L L++ H+ ++Y L+ +F+ + T Sbjct: 124 SFFEIYPIKPNG-YFIWENLQFNLVKVLHV--NSNYCLMPTYGLFFEVNQT 171 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,196,467,510 Number of extensions: 48797989 Number of successful extensions: 114236 Number of sequences better than 1.0e-05: 29 Number of HSP's gapped: 114512 Number of HSP's successfully gapped: 29 Length of query: 192 Length of database: 3,060,696,203 Length adjustment: 128 Effective length of query: 64 Effective length of database: 1,854,806,283 Effective search space: 118707602112 Effective search space used: 118707602112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 127 (53.5 bits)