BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0054.p
         (183 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGH4.1 B3KGH4_9BACI Putative uncharacterized protein                236   6e-61
B1DHT5.1 B1DHT5_9BACL Putative uncharacterized protein                170   6e-41

>B3KGH4.1 B3KGH4_9BACI Putative uncharacterized protein
          Length = 184

 Score =  236 bits (602), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 113/185 (61%), Positives = 145/185 (78%), Gaps = 3/185 (1%)

Query: 1   MRWKKIAVCVVVFSLMGGS-LLFADAVNQKIRVWSNGKEVADGGYLIDGKAYIPAREAGG 59
           M+WKK+  C++V SLMGGS LLFAD+VN+++RVW NG+E+ DGGYLIDGK Y+P RE  G
Sbjct: 1   MKWKKVMACMLVLSLMGGSTLLFADSVNERVRVWLNGRELKDGGYLIDGKTYVPVREFDG 60

Query: 60  VVSWD-GSGKLSILRPNVHIVLFKGDNVFGNVNVGKLKIKVLTQVDSLTEEVAAVKVAIT 118
            V W+  +G++ +++PNVHI LFKGD VFGNVN GKLK  V +QVDSL   + AVKVAI 
Sbjct: 61  AVDWNSANGQVQVVKPNVHIFLFKGDTVFGNVNKGKLKFNVFSQVDSLNNNIHAVKVAIE 120

Query: 119 DPSGNVKDIQSQDLGSSKKEDFWFPTSEFTYDFKDAGKYRVGFYIKPSKGADYILVSEKV 178
           DPSGN+KDIQSQ++   +K++FWF T +FTYDFK AGKY VGFY+K      ++ V+EKV
Sbjct: 121 DPSGNIKDIQSQEV-KDRKDNFWFRTYDFTYDFKTAGKYSVGFYVKVKSDDGFVKVAEKV 179

Query: 179 ITALD 183
           ITAL+
Sbjct: 180 ITALN 184


>B1DHT5.1 B1DHT5_9BACL Putative uncharacterized protein
          Length = 189

 Score =  170 bits (430), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 86/187 (45%), Positives = 131/187 (70%), Gaps = 7/187 (3%)

Query: 1   MRWKKIAVCVVVFSLMGGSLLFADAVNQKIRVWSNGKEVADGGYLIDGKAYIPAREA--- 57
           +R+KK+A+ + + S+ GG+L+FAD+ +QK+RV  NG E+ DGG ++DGK Y+P R+    
Sbjct: 3   VRFKKVAILLAILSVFGGTLIFADSASQKVRVIVNGSELDDGGIIVDGKTYLPLRQMVNS 62

Query: 58  -GGVVSWDG-SGKLSILRPNVHIVLFKGDNVFGNVNVG-KLKIKVLTQVDSLTEEVAAVK 114
              +V WD  S K +I +PNVH++LF+   +FGNV+ G K    V +Q+D+L  +++AVK
Sbjct: 63  LNALVDWDNQSKKATINKPNVHMILFQDKVIFGNVDKGNKYTFNVFSQIDNLKTDISAVK 122

Query: 115 VAITDPSGNVKDIQSQDLGSSKKEDFWFPTSEFTYDFKDAGKYRVGFYIKPSKGADYILV 174
           V+ITDP G  K IQSQ++ S  K++FW+ T +  Y+F+ AGKY V FY+K S   D+ +V
Sbjct: 123 VSITDPYGTEKVIQSQNV-SITKDNFWYRTEDIKYNFEYAGKYAVRFYLKTSPSDDWTVV 181

Query: 175 SEKVITA 181
           SEK+IT+
Sbjct: 182 SEKLITS 188


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 1,138,237,131
Number of extensions: 48376644
Number of successful extensions: 118210
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 118204
Number of HSP's successfully gapped: 2
Length of query: 183
Length of database: 3,060,696,203
Length adjustment: 127
Effective length of query: 56
Effective length of database: 1,864,227,298
Effective search space: 104396728688
Effective search space used: 104396728688
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)