BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0053.p
         (107 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KGH5.1 B3KGH5_9BACI Putative uncharacterized protein                125   1e-27
B1DHT4.1 B1DHT4_9BACL Putative uncharacterized protein                 73   8e-12
C1PSV3.1 C1PSV3_ALIAC Putative uncharacterized protein                 53   7e-06
B7DRM7.1 B7DRM7_9BACL Putative uncharacterized protein                 53   7e-06

>B3KGH5.1 B3KGH5_9BACI Putative uncharacterized protein
          Length = 107

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 71/76 (93%)

Query: 29  FVLTLTNEQGEDVEMVLVETFDVGEKLYALLLERENPEADGIILRMEEEDEEMVLYNIED 88
           FVLTLT+E+G++VEMVLVETFDVGEKLYALLLERENPEADG+ILRMEEE+EEMVLYNIED
Sbjct: 27  FVLTLTDEEGKEVEMVLVETFDVGEKLYALLLERENPEADGVILRMEEENEEMVLYNIED 86

Query: 89  EAEWKAVEEAYNELLA 104
           E EW  VE  YNEL+A
Sbjct: 87  EDEWNEVEAVYNELVA 102


>B1DHT4.1 B1DHT4_9BACL Putative uncharacterized protein
          Length = 106

 Score = 73.2 bits (178), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 53/74 (71%)

Query: 29  FVLTLTNEQGEDVEMVLVETFDVGEKLYALLLERENPEADGIILRMEEEDEEMVLYNIED 88
            V  +T+++G++ EMV+V TF+    +YA+LL+R +PEADG+I R+EEE++E  L  IED
Sbjct: 23  HVFIVTDDEGQEREMVMVYTFESENNVYAVLLDRNDPEADGVIFRIEEENDEAFLVGIED 82

Query: 89  EAEWKAVEEAYNEL 102
           +AEW  V   Y E+
Sbjct: 83  DAEWDRVTAIYEEI 96


>C1PSV3.1 C1PSV3_ALIAC Putative uncharacterized protein
          Length = 98

 Score = 53.1 bits (126), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 30  VLTLTNEQGEDVEMVLVETFDVGEKLYALLLERENPEADGIILRMEEED-EEMVLYNIED 88
           V+ L +E GE+ + VL E   V  K YA+LL  ++   +G+I R++ ED E+MVL  IED
Sbjct: 13  VIVLEDENGEEHQFVLGEVLTVDNKDYAVLLPLDDSMEEGVIFRIDGEDGEQMVLSEIED 72

Query: 89  EAEWKAVEEAYN 100
           + EW+ V +AYN
Sbjct: 73  DEEWQRVVDAYN 84


>B7DRM7.1 B7DRM7_9BACL Putative uncharacterized protein
          Length = 98

 Score = 53.1 bits (126), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 1/72 (1%)

Query: 30  VLTLTNEQGEDVEMVLVETFDVGEKLYALLLERENPEADGIILRMEEED-EEMVLYNIED 88
           V+ L +E GE+ + VL E   V  K YA+LL  ++   +G+I R++ ED E+MVL  IED
Sbjct: 13  VIVLEDENGEEHQFVLGEVLTVDNKDYAVLLPLDDSMEEGVIFRIDGEDGEQMVLSEIED 72

Query: 89  EAEWKAVEEAYN 100
           + EW+ V +AYN
Sbjct: 73  DEEWQRVVDAYN 84


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.309    0.131    0.345 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 465,317,844
Number of extensions: 16919940
Number of successful extensions: 52823
Number of sequences better than 1.0e-05: 14
Number of HSP's gapped: 52879
Number of HSP's successfully gapped: 14
Length of query: 107
Length of database: 3,060,696,203
Length adjustment: 75
Effective length of query: 32
Effective length of database: 2,354,120,078
Effective search space: 75331842496
Effective search space used: 75331842496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 125 (52.8 bits)