BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0049.p (205 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGH8.1 B3KGH8_9BACI Putative uncharacterized protein 290 6e-77 B1DHS2.1 B1DHS2_9BACL Putative uncharacterized protein 240 6e-62 Q9K8U4.1 Q9K8U4_BACHD BH2908 protein 60 2e-07 C0ZGF7.1 C0ZGF7_BREBN Putative uncharacterized protein 59 3e-07 Q5WEW3.1 Q5WEW3_BACSK Putative uncharacterized protein 58 6e-07 >B3KGH8.1 B3KGH8_9BACI Putative uncharacterized protein Length = 198 Score = 290 bits (742), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 141/198 (71%), Positives = 171/198 (86%) Query: 8 VNKNDEVEYCNLELRFDRQHIQDLIKDLIKEGYSLYWSENETVFLISVRTGRKLVKLRFQ 67 +NK++EVEYCNLELRFDR+HIQDLIK+LI+EGYSLYWSENET F+IS+RTGRKLVKLRFQ Sbjct: 1 MNKSEEVEYCNLELRFDRRHIQDLIKELIQEGYSLYWSENETQFVISIRTGRKLVKLRFQ 60 Query: 68 RIKDGFKLVGDYMIRDARLSEWMEKLIGDMRGHAVVKRFRDRQIIIENILFGEVIRLVEI 127 R GFKLVGDYMIRD +L+EWMEKLI + RGHAVVKRF+DRQI+IENILFGEVIRLVEI Sbjct: 61 RTGSGFKLVGDYMIRDPKLAEWMEKLIENTRGHAVVKRFKDRQILIENILFGEVIRLVEI 120 Query: 128 SGYQQRVLYQKGPLLSDQELTKLFYSVEGEERIRDRRLEVDEQLDLLHKAIQSKDDERTA 187 SGY+QRVL+QKG +++QE+ +LF S EGE+R+ RLE D++L+ LH A+Q + ++ A Sbjct: 121 SGYRQRVLFQKGTPMTEQEMVRLFESDEGEQRLLLSRLETDDELEKLHAALQEGNQDKIA 180 Query: 188 ACKARLAELTRELNMLEW 205 ACK RL EL+ EL LEW Sbjct: 181 ACKQRLRELSLELMRLEW 198 >B1DHS2.1 B1DHS2_9BACL Putative uncharacterized protein Length = 198 Score = 240 bits (612), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 118/197 (59%), Positives = 154/197 (78%) Query: 8 VNKNDEVEYCNLELRFDRQHIQDLIKDLIKEGYSLYWSENETVFLISVRTGRKLVKLRFQ 67 +NK+ EVEYCNLELRFDR+ IQ+LI+DLI+EGYSLYWSE E FLIS+RTGRKLVKLRFQ Sbjct: 1 MNKSYEVEYCNLELRFDRRQIQNLIRDLIQEGYSLYWSETEGQFLISIRTGRKLVKLRFQ 60 Query: 68 RIKDGFKLVGDYMIRDARLSEWMEKLIGDMRGHAVVKRFRDRQIIIENILFGEVIRLVEI 127 R+K+ +K+VGDY I+D +LSE +EKLI D RGHA+VKR +DRQI+IENI+FGE+IRLVE+ Sbjct: 61 RMKNRYKIVGDYTIKDEKLSELLEKLINDTRGHAIVKRIKDRQIVIENIMFGEIIRLVEV 120 Query: 128 SGYQQRVLYQKGPLLSDQELTKLFYSVEGEERIRDRRLEVDEQLDLLHKAIQSKDDERTA 187 SG + R++YQK P ++ +E+ K F S EER R E+D +L +L+ A+Q ++E A Sbjct: 121 SGMEHRIIYQKKPFVTIEEMIKAFQSKRAEERAVVLRYELDYELTVLYDALQENNEEAIA 180 Query: 188 ACKARLAELTRELNMLE 204 K +LA L E+ LE Sbjct: 181 ESKEKLALLRSEMLQLE 197 >Q9K8U4.1 Q9K8U4_BACHD BH2908 protein Length = 202 Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 45/197 (22%), Positives = 96/197 (48%), Gaps = 14/197 (7%) Query: 14 VEYCNLELRFDRQHIQDLIKDLIKEGYSLYWSENETVFLISVRTGRKLVKLRFQRIKDGF 73 VE+ +L + ++ + IK ++ E YSLYW +E + + + + ++ F + Sbjct: 8 VEFVDLSVNLPKKTLHHFIKQMMNEEYSLYWRYDEDQIKLLIEKEQTVHEIPFIKNAPFL 67 Query: 74 KLVGDYM-IRDARLSEWMEKLIGDMRGHAVVKRFRDRQIIIENILFGEVIRLVEISGYQQ 132 L + + + +++ +E+L+ +G VVKR I + G++ ++EI G ++ Sbjct: 68 TLSAKSLFVTEPIIAQAIERLLQSEKGSGVVKRHTKGPQYITSYQEGDIESMIEIDGSEK 127 Query: 133 RVLYQKGPLLS----DQEL-TKLFYSVEGEERIRDRRLEVDEQLDLLHKAIQSKDDERTA 187 ++ + G ++ DQ + + Y++ LE+D L L++A+QS+D + Sbjct: 128 VMMNRNGSMIQYKDDDQTMEPQTIYNIVS--------LEIDYLLMELYEALQSRDSKVVE 179 Query: 188 ACKARLAELTRELNMLE 204 CK +L+ L + LE Sbjct: 180 TCKQKLSRLANQRKQLE 196 >C0ZGF7.1 C0ZGF7_BREBN Putative uncharacterized protein Length = 198 Score = 58.9 bits (141), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 76/153 (49%), Gaps = 3/153 (1%) Query: 52 LISVRTGRKLVKLRFQRIKDGFKLVGDYMIRDARLSEWMEKLIGDMRGHAVVKRFRDRQI 111 +++ +TG ++L F R+ + Y+I+D +L+ M K + RG+ +V R D Sbjct: 48 ILNDKTGE--IQLSFCRVGSRYSCDSSYLIQDRQLANAMRKAMKAFRGYGIVHRIYDGFT 105 Query: 112 IIENILFGEVIRLVEISGYQQRVLYQKGPLLSDQELTKLFYSVEGEERIRDRRLEVDEQL 171 ++ + G V+ + E++G ++ +++ L EL LF E+ I R E D L Sbjct: 106 MVYHYDQGSVVSIQELTGDEEVSIFENNSLHMANELEALFQQDGSEQEIESLRQETDRWL 165 Query: 172 DLLHKAIQSKDDERTAACKARLAELTRELNMLE 204 DL + A ++ E+ A RL L+R L LE Sbjct: 166 DLRNWAKRTA-PEKLPAIDVRLVTLSRRLFELE 197 >Q5WEW3.1 Q5WEW3_BACSK Putative uncharacterized protein Length = 201 Score = 57.8 bits (138), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 44/185 (23%), Positives = 91/185 (49%), Gaps = 6/185 (3%) Query: 14 VEYCNLELRFDRQHIQDLIKDLIKEGYSLYWSENETVFLISVRTGRKLVKLRFQRIKDGF 73 +E+ L + + + IK ++ + Y+L+W + ++V G +L F R ++ Sbjct: 8 IEFQELSINLSKTALHQFIKRMMGQHYALFWRYDAKTIYLTVELGELTHELPFIRNEEFL 67 Query: 74 KLVGDYM-IRDARLSEWMEKLIGDMRGHAVVKRFRDRQIIIENILFGEVIRLVEISGYQQ 132 + + + D LS+ +E L+ +G+ +VKR + I + G+V ++EI G ++ Sbjct: 68 TMQAKVLYVYDDVLSDALENLLQSEKGNGIVKRTSKGPLYITSYNGGDVESMIEIDGSEK 127 Query: 133 RVLYQKGPLLSDQELTKLFYSVEGEERIRDR-RLEVDEQLDLLHKAIQSKDDERTAACKA 191 ++ + G ++ ++ K G + + LE+D L L +AI++KD R + K Sbjct: 128 IMMNKNGSMVQYKDDGKAL----GPRTLYNMLNLEIDYVLMELFEAIEAKDAPRISTHKQ 183 Query: 192 RLAEL 196 RL +L Sbjct: 184 RLKKL 188 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.140 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,159,649,224 Number of extensions: 44881842 Number of successful extensions: 128230 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 128228 Number of HSP's successfully gapped: 5 Length of query: 205 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 76 Effective length of database: 1,845,385,268 Effective search space: 140249280368 Effective search space used: 140249280368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)