BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0047.p
         (176 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0ZBV9.1 C0ZBV9_BREBN Shikimate kinase EC=2.7.1.71                     99   1e-19
B3KGI1.1 B3KGI1_9BACI Shikimate kinase EC=2.7.1.71                     96   2e-18
C1SP10.1 C1SP10_9BACT Shikimate kinase                                 94   7e-18
B7Y177.1 B7Y177_RUMHA Putative uncharacterized protein                 88   3e-16
C4G8Y0.1 C4G8Y0_9FIRM Putative uncharacterized protein                 88   4e-16

>C0ZBV9.1 C0ZBV9_BREBN Shikimate kinase EC=2.7.1.71
          Length = 173

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/107 (44%), Positives = 69/107 (64%)

Query: 7   KNIILVGMMATGKSTVXXXXXXXXXXXXVDLDHVIIQQKGRSIAELFAEGGEEYFRRIES 66
           KN++LVG M TGK+TV             DLD  I++ +GRSI E+F + GE YFR +E+
Sbjct: 2   KNLVLVGFMGTGKTTVGAALAASLEMKHTDLDDAIVEWEGRSIPEIFTDQGEAYFRDVET 61

Query: 67  AVLKDVLEGEGRIISTGGGAVLAPGNADMMLQHGFVVALTASEDAII 113
             L  +L    ++++TGGGAVL   N +MML+HG V+AL A+E+ +I
Sbjct: 62  KRLAQLLAVGSQVVTTGGGAVLRKQNVEMMLEHGIVIALHATEEELI 108


>B3KGI1.1 B3KGI1_9BACI Shikimate kinase EC=2.7.1.71
          Length = 172

 Score = 95.5 bits (236), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 72/112 (64%)

Query: 2   MNYANKNIILVGMMATGKSTVXXXXXXXXXXXXVDLDHVIIQQKGRSIAELFAEGGEEYF 61
           ++   +NIIL+GMM TGKSTV            +DLD  I + +GR+I+E+F   GE YF
Sbjct: 3   LDKLGRNIILIGMMGTGKSTVGRLVADSLGYNLIDLDAEIERMEGRTISEMFETEGEPYF 62

Query: 62  RRIESAVLKDVLEGEGRIISTGGGAVLAPGNADMMLQHGFVVALTASEDAII 113
           R  ESA L+ VL  +G ++++GGGAVL   N D+M + G+VVALTA   +I+
Sbjct: 63  REAESAALRSVLLRDGIVLASGGGAVLRSDNCDVMKRGGWVVALTADAASIV 114


>C1SP10.1 C1SP10_9BACT Shikimate kinase
          Length = 171

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 65/107 (60%)

Query: 7   KNIILVGMMATGKSTVXXXXXXXXXXXXVDLDHVIIQQKGRSIAELFAEGGEEYFRRIES 66
           KNI L+G M TGKS+V            VD D ++I++ GR I  +F E  EE FRR+E+
Sbjct: 2   KNIYLIGFMGTGKSSVGRLLAEDLGASYVDTDQMVIEKTGREITNIFEEDSEEDFRRLET 61

Query: 67  AVLKDVLEGEGRIISTGGGAVLAPGNADMMLQHGFVVALTASEDAII 113
            VL +V++ E  ++STGGG V+  GN + M Q GFVV L A  + I+
Sbjct: 62  EVLSEVVDKENLVVSTGGGIVVTMGNLEAMRQTGFVVTLIADANTIL 108


>B7Y177.1 B7Y177_RUMHA Putative uncharacterized protein
          Length = 173

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 44/113 (38%), Positives = 68/113 (60%)

Query: 1   MMNYANKNIILVGMMATGKSTVXXXXXXXXXXXXVDLDHVIIQQKGRSIAELFAEGGEEY 60
           M +   +++IL+G M TGKSTV             ++D +I+Q++G  I+ +F E GE Y
Sbjct: 1   MNSLQKQHLILIGFMGTGKSTVARQLSRQLELPFFEMDEMIVQEQGMEISNIFQEKGEAY 60

Query: 61  FRRIESAVLKDVLEGEGRIISTGGGAVLAPGNADMMLQHGFVVALTASEDAII 113
           FR +E+A+LK +L+ E  I+S GGG +L   N   M +HG V+ LTA  + I+
Sbjct: 61  FRDLETALLKKLLQEEKGILSCGGGIILRDENIQAMKKHGTVILLTAKPETIL 113


>C4G8Y0.1 C4G8Y0_9FIRM Putative uncharacterized protein
          Length = 249

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 75/142 (52%), Gaps = 4/142 (2%)

Query: 7   KNIILVGMMATGKSTVXXXXXXXXXXXXVDLDHVIIQQKGRSIAELFAEGGEEYFRRIES 66
           KN+ LVG M  GKST+            VD+D +I++++G  +A++FAE GEE FRRIES
Sbjct: 3   KNLYLVGFMGVGKSTIARALRRRIGWELVDIDSMIVREQGMPVAQIFAERGEEEFRRIES 62

Query: 67  AVLKDVLEGEGRIISTGGGAVLAPGNADMMLQHGFVVALTASEDAIIAXXXXQRGSEQAA 126
             L  + EG+ +IIS GGG  +   N  +M ++G  + LTAS   I+             
Sbjct: 63  ETLARISEGKHQIISCGGGVPMRQENIRIMKENGICILLTASPYVILRRVEKDTSRPLLQ 122

Query: 127 ARRQCAGTGPDDSGTAPERLPF 148
            ++   G     SG   ER+P+
Sbjct: 123 GKKTIKGI----SGLIRERMPY 140


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 949,591,984
Number of extensions: 35038827
Number of successful extensions: 90492
Number of sequences better than 1.0e-05: 1271
Number of HSP's gapped: 90375
Number of HSP's successfully gapped: 1271
Length of query: 176
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 50
Effective length of database: 1,873,648,313
Effective search space: 93682415650
Effective search space used: 93682415650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)