BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0046.p
         (102 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4IRY2.1 A4IRY2_GEOTN Rhodanese-like domain protein                   136   5e-31
B4BPW8.1 B4BPW8_9BACI Rhodanese domain protein                        136   5e-31
Q5KW10.1 Q5KW10_GEOKA Hypothetical conserved protein                  132   1e-29
C3J5H3.1 C3J5H3_9BACI Rhodanese domain protein                        132   1e-29
B7YEC6.1 B7YEC6_9BACI Rhodanese domain protein                        132   1e-29

>A4IRY2.1 A4IRY2_GEOTN Rhodanese-like domain protein
          Length = 104

 Score =  136 bits (343), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 76/96 (79%)

Query: 1  MNEIPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEA 60
          M EI +ITA E++++LE GE L ++DVREDEEVA GMIPGAKHI MG+IP   +EL +E 
Sbjct: 1  MEEIKEITAAEVKEKLERGEKLNIVDVREDEEVALGMIPGAKHIKMGDIPNRLDELDKEE 60

Query: 61 EFVFICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW 96
          E++F+CRSG RS+ VC YLQ+ GYR  N+ GGM+EW
Sbjct: 61 EYIFVCRSGRRSENVCRYLQELGYRVRNMIGGMLEW 96


>B4BPW8.1 B4BPW8_9BACI Rhodanese domain protein
          Length = 104

 Score =  136 bits (343), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 59/96 (61%), Positives = 76/96 (79%)

Query: 1  MNEIPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEA 60
          M EI +ITA E++++LE GE L ++DVREDEEVA GMIPGAKHI MG+IP   +EL +E 
Sbjct: 1  MEEIKEITAAEVKEKLERGEKLNIVDVREDEEVALGMIPGAKHIKMGDIPNRLDELDKEE 60

Query: 61 EFVFICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW 96
          E++F+CRSG RS+ VC YLQ+ GYR  N+ GGM+EW
Sbjct: 61 EYIFVCRSGRRSENVCRYLQELGYRVRNMIGGMLEW 96


>Q5KW10.1 Q5KW10_GEOKA Hypothetical conserved protein
          Length = 104

 Score =  132 bits (332), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 60/101 (59%), Positives = 77/101 (76%), Gaps = 1/101 (0%)

Query: 1   MNEIPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEA 60
           M EI +IT  E++++LE GE L ++DVREDEEVA GMIPGAKHI MG+IP   EE  +  
Sbjct: 1   MEEIKEITPAEVKEKLERGEKLNIVDVREDEEVALGMIPGAKHIKMGDIPDRLEEFDRNE 60

Query: 61  EFVFICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW-NETA 100
           E++F+CRSG RS+ VC YLQ+ GYR  N++GGM+EW  ETA
Sbjct: 61  EYIFVCRSGRRSENVCRYLQELGYRVRNMTGGMLEWEGETA 101


>C3J5H3.1 C3J5H3_9BACI Rhodanese domain protein
          Length = 104

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 74/96 (77%)

Query: 1  MNEIPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEA 60
          M EI +IT  E++++LE GE L ++DVREDEEVA GMIPGAKHI MG+IP   EE  +  
Sbjct: 1  MEEIKEITPAEVKEKLERGEKLNIVDVREDEEVALGMIPGAKHIKMGDIPDRLEEFDRNE 60

Query: 61 EFVFICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW 96
          E++F+CRSG RS+ VC YLQ+ GYR  N++GGM+EW
Sbjct: 61 EYIFVCRSGRRSENVCRYLQELGYRVRNMTGGMLEW 96


>B7YEC6.1 B7YEC6_9BACI Rhodanese domain protein
          Length = 104

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 57/96 (59%), Positives = 74/96 (77%)

Query: 1  MNEIPQITAQELRQRLESGEDLVLIDVREDEEVAFGMIPGAKHIPMGEIPQHTEELPQEA 60
          M EI +IT  E++++LE GE L ++DVREDEEVA GMIPGAKHI MG+IP   EE  +  
Sbjct: 1  MEEIKEITPAEVKEKLERGEKLNIVDVREDEEVALGMIPGAKHIKMGDIPDRLEEFDRNE 60

Query: 61 EFVFICRSGARSQRVCEYLQQFGYRTSNLSGGMIEW 96
          E++F+CRSG RS+ VC YLQ+ GYR  N++GGM+EW
Sbjct: 61 EYIFVCRSGRRSENVCRYLQELGYRVRNMTGGMLEW 96


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.135    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 641,270,776
Number of extensions: 24848835
Number of successful extensions: 69637
Number of sequences better than 1.0e-05: 1518
Number of HSP's gapped: 70347
Number of HSP's successfully gapped: 1523
Length of query: 102
Length of database: 3,060,696,203
Length adjustment: 70
Effective length of query: 32
Effective length of database: 2,401,225,153
Effective search space: 76839204896
Effective search space used: 76839204896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)