BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0045.p (429 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGI3.1 B3KGI3_9BACI 3-phosphoshikimate 1-carboxyvinyltransfera... 686 0.0 B1DHR8.1 B1DHR8_9BACL 3-phosphoshikimate 1-carboxyvinyltransfera... 669 0.0 Q67PI9.1 Q67PI9_SYMTH 3-phosphoshikimate 1-carboxyvinyltransfera... 439 e-121 Q9RVD3.2 AROA_DEIRA 3-phosphoshikimate 1-carboxyvinyltransferase... 344 9e-93 Q1IZN3.1 AROA_DEIGD 3-phosphoshikimate 1-carboxyvinyltransferase... 340 2e-91 >B3KGI3.1 B3KGI3_9BACI 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 430 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 334/429 (77%), Positives = 365/429 (85%) Query: 1 MDVIVRPTPTLQGEFGALSSKNYTTRYLLVAALSEGVSTIYHPAHSEDSDAIRRCIADLG 60 MDVIVRPTP L+GE GALSSKNYTTRYLLVAAL+EG STIY+PAHSEDSDA+RRCI DLG Sbjct: 1 MDVIVRPTPILKGEIGALSSKNYTTRYLLVAALAEGTSTIYYPAHSEDSDAMRRCIRDLG 60 Query: 61 AVLTEDEEKIVIQGFGRHPRDVKELNVGNAGAVLRFLMAVAALSPEVTFVNTYPDSLGKR 120 AV+ EDEEK VI GFG+ PRDVKELNVGNAGAVLRFLM V ALS EVTFVN YP+SLGKR Sbjct: 61 AVIEEDEEKAVITGFGKSPRDVKELNVGNAGAVLRFLMGVTALSKEVTFVNAYPESLGKR 120 Query: 121 PHDDLITALGQLGVEVEHNNGKLPITIRGGKPAGGRITVSGAVSSQYLSALLFLTPLLEE 180 PHDDLI LGQLGVEVEHN+G+LPITIRGG+P GG++TVSG VSSQYLSALLFLTPLL E Sbjct: 121 PHDDLIETLGQLGVEVEHNDGRLPITIRGGQPKGGKLTVSGEVSSQYLSALLFLTPLLAE 180 Query: 181 DSEIIVLDDLKSKVVVGQTLEVLEQAGIVVHAAEDYMSFKVPGGQSYAAKSYTVQGDYPG 240 DSEI V DLKSKVV+GQTLEVLEQAGI + AA+DY F+VPGGQSY AK+YTVQGDYPG Sbjct: 181 DSEITVTGDLKSKVVIGQTLEVLEQAGITIQAADDYTFFRVPGGQSYEAKTYTVQGDYPG 240 Query: 241 SXXXXXXXXXTKSDVKIHRLAEQSKQGERAIIDVLRMMQVPLTHENGTVHVQGNGILKAV 300 S T+SDV I L+E SKQGERAIIDVLRMM+VPLTHENG VHVQGN LKA+ Sbjct: 241 SAAVLAAAAVTQSDVTIRNLSEDSKQGERAIIDVLRMMEVPLTHENGNVHVQGNRTLKAL 300 Query: 301 EFDGDXXXXXXXXXXXXXXXXKGTSRFYNVENLRYKECDRITDYLAELARAGASVEERRD 360 +FDGD +GTSRFYNVENLRYKECDRITDYL EL +AGA+VEER+ Sbjct: 301 QFDGDAATDAVLAMVAAAVFAEGTSRFYNVENLRYKECDRITDYLTELRKAGANVEERQA 360 Query: 361 EIIVHGKPEGVEGGVTINAHYDHRVIMALTVVGLRARQPLQIKDAHHVAKSYPQYFDHLR 420 EIIVHG+P GVEGGV INAHYDHRVIMALTVVGLRA QP++IKDAHHVAKSYPQYFDH++ Sbjct: 361 EIIVHGRPGGVEGGVEINAHYDHRVIMALTVVGLRAGQPIRIKDAHHVAKSYPQYFDHMK 420 Query: 421 LLGADVEWV 429 LGADVEWV Sbjct: 421 ALGADVEWV 429 >B1DHR8.1 B1DHR8_9BACL 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 430 Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust. Identities = 321/429 (74%), Positives = 366/429 (85%) Query: 1 MDVIVRPTPTLQGEFGALSSKNYTTRYLLVAALSEGVSTIYHPAHSEDSDAIRRCIADLG 60 MDVIV PTPTLQGE ALSSKNYTTRYLLVAAL++G STIY+PAHSEDSDA+RRCI DLG Sbjct: 1 MDVIVTPTPTLQGEIQALSSKNYTTRYLLVAALADGTSTIYYPAHSEDSDAMRRCIRDLG 60 Query: 61 AVLTEDEEKIVIQGFGRHPRDVKELNVGNAGAVLRFLMAVAALSPEVTFVNTYPDSLGKR 120 A++ ED+EKIVI GFG++P+DV +L+VGNAGAVLRFLMA+A+L P+VTF+N YPDSLGKR Sbjct: 61 AIVEEDDEKIVITGFGKNPKDVDQLDVGNAGAVLRFLMAIASLCPDVTFINRYPDSLGKR 120 Query: 121 PHDDLITALGQLGVEVEHNNGKLPITIRGGKPAGGRITVSGAVSSQYLSALLFLTPLLEE 180 PH+DLI ALGQ+GV++EHN GKLPI I+GG P GG+I VSG VSSQ+LSALLFLTPLLEE Sbjct: 121 PHNDLIDALGQMGVKIEHNEGKLPIRIQGGAPKGGKIQVSGNVSSQFLSALLFLTPLLEE 180 Query: 181 DSEIIVLDDLKSKVVVGQTLEVLEQAGIVVHAAEDYMSFKVPGGQSYAAKSYTVQGDYPG 240 DSEI VL DLKSKVVVGQTLEVLEQAGIV+HA+ED M +++PG Q Y AK Y VQGDYPG Sbjct: 181 DSEIEVLHDLKSKVVVGQTLEVLEQAGIVIHASEDLMHYRIPGNQKYEAKKYVVQGDYPG 240 Query: 241 SXXXXXXXXXTKSDVKIHRLAEQSKQGERAIIDVLRMMQVPLTHENGTVHVQGNGILKAV 300 S T SDV +HRLAE SKQGERA++DVLRMM+VPLTHENG VHV+GNG LKAV Sbjct: 241 SAAILAAAAVTNSDVIVHRLAENSKQGERAVVDVLRMMEVPLTHENGIVHVKGNGKLKAV 300 Query: 301 EFDGDXXXXXXXXXXXXXXXXKGTSRFYNVENLRYKECDRITDYLAELARAGASVEERRD 360 EFDGD +GTSRFY+VENLRYKECDRITDYL EL +AGA+VEER+ Sbjct: 301 EFDGDKATDAVLAMVAAAVFAEGTSRFYDVENLRYKECDRITDYLNELRKAGANVEERQA 360 Query: 361 EIIVHGKPEGVEGGVTINAHYDHRVIMALTVVGLRARQPLQIKDAHHVAKSYPQYFDHLR 420 EIIVHG+PEGVEGGV INAHYDHRVIMALTVVGLRA+ P++I+DAHHVAKSYP YFDHL+ Sbjct: 361 EIIVHGRPEGVEGGVEINAHYDHRVIMALTVVGLRAKNPIRIRDAHHVAKSYPIYFDHLK 420 Query: 421 LLGADVEWV 429 LGA+VEWV Sbjct: 421 ALGANVEWV 429 >Q67PI9.1 Q67PI9_SYMTH 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 449 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 237/448 (52%), Positives = 289/448 (64%), Gaps = 22/448 (4%) Query: 1 MDVIVRPTPTLQGEFGALSSKNYTTRYLLVAALSEGVSTIYHPAHSEDSDAIRRCIADLG 60 MDV V P L+G SSKNYTTRYLL AAL+EG S I +PA SED+ A++RC+ADLG Sbjct: 1 MDVRVYPATRLEGTVNPPSSKNYTTRYLLAAALAEGESLIRYPAESEDAAALKRCLADLG 60 Query: 61 AVLTEDEEKIVIQGFGRHPRDVKELNVGNAGAVLRFLMAVAALS-PEVTFVNTYPDSLGK 119 A L D + ++GFG +PR+ LN GNAGAVLRFLMAV A + E+TFV Y +SLG+ Sbjct: 61 AELIPDGPHLRVRGFGANPRNPGTLNPGNAGAVLRFLMAVCAATLDEITFVTDYAESLGR 120 Query: 120 RPHDDLITALGQLGVEVEHNNGKLPITIRGGKPAG--------------------GRITV 159 RPH DL+ AL QLG +VE G+LPITIR G PAG G + V Sbjct: 121 RPHGDLLDALAQLGAQVESREGRLPITIRTGPPAGAGSRSGWERPPSGRVGRLRGGTVRV 180 Query: 160 SGAVSSQYLSALLFLTPLLEEDSEIIVLDDLKSKVVVGQTLEVLEQAGIVVHAAEDYMSF 219 SG+VSSQY SALLF PL+ ED I V D+KS+ + QTL+VL++AGI V A +D F Sbjct: 181 SGSVSSQYTSALLFAAPLIGEDVTIEVTGDMKSRPPIRQTLQVLQEAGIRVEAGDDLRRF 240 Query: 220 KVPGGQSYAAKSYTVQGDYPGSXXXXXXXXXTKSDVKIHRLAEQSKQGERAIIDVLRMMQ 279 +PGGQ Y + YTV GDYPG+ SDV I RL +QGER IDVLR M Sbjct: 241 HIPGGQRYRPREYTVPGDYPGAAALMAAAAVVPSDVTIPRLF-PDEQGERQAIDVLRAMG 299 Query: 280 VPLTHENGTVHVQGNGILKAVEFDGDXXXXXXXXXXXXXXXXKGTSRFYNVENLRYKECD 339 + H+ V ++G L+ V FDGD +G + FYNVENLRYKECD Sbjct: 300 ADIAHDGQQVWIRGGRPLRGVRFDGDPFTDAVLALTAAAVLAEGETVFYNVENLRYKECD 359 Query: 340 RITDYLAELARAGASVEERRDEIIVHGKPEGVEGGVTINAHYDHRVIMALTVVGLRARQP 399 RI+DY AEL + GA V E RD++IV G+PEGVEGGVT+ + DHRVIM LT+V LRAR+P Sbjct: 360 RISDYRAELNKLGARVAEERDKLIVRGRPEGVEGGVTVESRIDHRVIMGLTIVALRAREP 419 Query: 400 LQIKDAHHVAKSYPQYFDHLRLLGADVE 427 + I+DAHHVAKSYP +F LR LGA VE Sbjct: 420 VVIRDAHHVAKSYPAFFADLRGLGARVE 447 >Q9RVD3.2 AROA_DEIRA 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 439 Score = 344 bits (883), Expect = 9e-93, Method: Compositional matrix adjust. Identities = 194/429 (45%), Positives = 249/429 (58%), Gaps = 2/429 (0%) Query: 1 MDVIVRPTPTLQGEFGALSSKNYTTRYLLVAALSEGVSTIYHPAHSEDSDAIRRCIADLG 60 DVIV P L+GE A SKNYTTRYLL AAL+EG + + A SED++A+ RC+ D G Sbjct: 9 FDVIVHPARELRGELRAQPSKNYTTRYLLAAALAEGETRVVGVATSEDAEAMLRCLRDWG 68 Query: 61 AVLTEDEEKIVIQGFGRHPRDVKELNVGNAGAVLRFLMAVAALSPEVTFVNTYPDSLGKR 120 A + + VI+GFG P+ LN GNAGAV RFLM VAAL+ TFV YPDSLGKR Sbjct: 69 AGVELVGDDAVIRGFGARPQAGVTLNPGNAGAVARFLMGVAALTSGTTFVTDYPDSLGKR 128 Query: 121 PHDDLITALGQLGVEVEHNNGKLPITIRGGKPAGGRITVSGAVSSQYLSALLFLTPLLEE 180 P DL+ AL +LG V N+G+LPI++ G GG + VS SSQY SAL+FL PLL + Sbjct: 129 PQGDLLEALERLGAWVSSNDGRLPISV-SGPVRGGTVEVSAERSSQYASALMFLGPLLPD 187 Query: 181 DSEIIVLDDLKSKVVVGQTLEVLEQAGIVVHAAEDYMSFKVPGGQSYAAKSYTVQGDYPG 240 E+ + D+KS + QTL+ L G+ A++D +PGGQ Y V GDYPG Sbjct: 188 GLELRLTGDIKSHAPLRQTLDTLSDFGVRATASDDLRRISIPGGQKYRPGRVLVPGDYPG 247 Query: 241 SXXXXXXXXXTKSDVKIHRLAEQSKQGERAIIDVLRMMQVPLTHENGTVHVQGNGILKAV 300 S +V++ L E QGE+ ++VLR M + E T+ V+G L AV Sbjct: 248 SAAILTAAALLPGEVRLSNLREHDLQGEKEAVNVLREMGADIVREGDTLTVRGGRPLHAV 307 Query: 301 EFDGDXXXXXXXXXXXXXXXXKGTSRFYNVENLRYKECDRITDYLAELARAGASVEERRD 360 DGD +G + + NV LR KECDRI+D AEL R G E D Sbjct: 308 TRDGDSFTDAVQALTAAAAFAEGDTTWENVATLRLKECDRISDTRAELERLGLRARETAD 367 Query: 361 EIIVHGKPEGVEGGVTINAHYDHRVIMALTVVGLRARQPLQIKDAHHVAKSYPQYFDHLR 420 + V G + GG+T + H DHR+IM LT++GLRA PL+I AHH+ KSYPQ+F HL Sbjct: 368 SLSVTGSAH-LAGGITADGHGDHRMIMLLTLLGLRADAPLRITGAHHIRKSYPQFFAHLE 426 Query: 421 LLGADVEWV 429 LGA E+ Sbjct: 427 ALGARFEYA 435 >Q1IZN3.1 AROA_DEIGD 3-phosphoshikimate 1-carboxyvinyltransferase EC=2.5.1.19 Length = 440 Score = 340 bits (871), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 189/429 (44%), Positives = 249/429 (58%), Gaps = 2/429 (0%) Query: 1 MDVIVRPTPTLQGEFGALSSKNYTTRYLLVAALSEGVSTIYHPAHSEDSDAIRRCIADLG 60 DV+V P L+GE A SKNYTTRYLL AAL+EG + + A SED++A+ RC+ G Sbjct: 9 FDVLVHPVSELRGELRAQPSKNYTTRYLLAAALAEGETRVVGAATSEDAEALIRCLRAWG 68 Query: 61 AVLTEDEEKIVIQGFGRHPRDVKELNVGNAGAVLRFLMAVAALSPEVTFVNTYPDSLGKR 120 A + E +V++GFG HPR LN GNAGAV RFLM VAAL+ + TFV Y +SLG+R Sbjct: 69 ADVDRVGEDVVVRGFGAHPRAGMTLNPGNAGAVARFLMGVAALTTDTTFVTDYSESLGRR 128 Query: 121 PHDDLITALGQLGVEVEHNNGKLPITIRGGKPAGGRITVSGAVSSQYLSALLFLTPLLEE 180 P DL+ AL +LG V NG+LP+T+ G GGR+ VS SSQY SAL+FL PLL + Sbjct: 129 PQGDLLAALERLGARVSSRNGQLPVTL-SGPVRGGRVEVSAQRSSQYASALMFLGPLLPD 187 Query: 181 DSEIIVLDDLKSKVVVGQTLEVLEQAGIVVHAAEDYMSFKVPGGQSYAAKSYTVQGDYPG 240 ++ + ++KS + QTL+ L G+ A+ D +PGGQ+Y V GDYPG Sbjct: 188 GLDLRLTGEIKSHAPLRQTLDTLAAFGLQARASADLTRITIPGGQAYRPGRVLVPGDYPG 247 Query: 241 SXXXXXXXXXTKSDVKIHRLAEQSKQGERAIIDVLRMMQVPLTHENGTVHVQGNGILKAV 300 S +V + L E QGER ++VLR M L E V V+G L AV Sbjct: 248 SAALLVAAALLPGEVTVTNLREGDLQGEREALNVLRAMGADLVREGDRVTVRGGRPLHAV 307 Query: 301 EFDGDXXXXXXXXXXXXXXXXKGTSRFYNVENLRYKECDRITDYLAELARAGASVEERRD 360 DGD +GT+ + NV LR KECDRI+D EL R G + E D Sbjct: 308 TRDGDSFTDAVQALTAAAAFARGTTTWENVATLRLKECDRISDTRRELERLGLTATETAD 367 Query: 361 EIIVHGKPEGVEGGVTINAHYDHRVIMALTVVGLRARQPLQIKDAHHVAKSYPQYFDHLR 420 + + G + + G +T + H DHR+IM LT++GLRA PL+I AHH+ KSYP +F HL Sbjct: 368 SLSITGA-DRIPGDLTADGHGDHRMIMLLTLLGLRAEAPLRITGAHHIRKSYPLFFRHLE 426 Query: 421 LLGADVEWV 429 LGA E++ Sbjct: 427 ELGAHFEYL 435 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,446,449,680 Number of extensions: 97606297 Number of successful extensions: 267161 Number of sequences better than 1.0e-05: 1629 Number of HSP's gapped: 262754 Number of HSP's successfully gapped: 1756 Length of query: 429 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 290 Effective length of database: 1,751,175,118 Effective search space: 507840784220 Effective search space used: 507840784220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)