BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0043.p
         (168 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q9Z9W3.1 Q9Z9W3_BACHD Alkyl hydroperoxide reductase large subuni...   208   1e-52
Q65IY3.1 Q65IY3_BACLD Putative uncharacterized protein                202   1e-50
B3K607.1 B3K607_9BACI FAD-dependent pyridine nucleotide-disulphi...   187   3e-46
C0Z7T7.1 C0Z7T7_BREBN Putative disulfide oxidoreductase               164   2e-39
A0R092.1 A0R092_MYCS2 Methyltransferase                               105   1e-21

>Q9Z9W3.1 Q9Z9W3_BACHD Alkyl hydroperoxide reductase large subunit
           EC=1.6.99.3
          Length = 305

 Score =  208 bits (530), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 117/149 (78%), Gaps = 4/149 (2%)

Query: 1   MKDQPLDIPGLAEVYGKSAFVCPYCDGWELRDQPLVIITKGAELMHFAPLISGWTDRFTV 60
           MKD+PLDIPGL E YGKSAFVCPYCDGWELRD+ LV+I KG EL+HFAP+ISGWTDRFT+
Sbjct: 113 MKDRPLDIPGLVEAYGKSAFVCPYCDGWELRDESLVVINKGEELLHFAPIISGWTDRFTI 172

Query: 61  CTNGPDQLTDAEREEFKGKQVPLFQSPIRHIDSSDGLVRQVVLEDGTDVSCRGIFFKPE- 119
           CTNGPD+LT+ +REE +  QVP++ SPIR IDS+DG+V QVVL+DGT + CRGIFFKPE 
Sbjct: 173 CTNGPDELTEDQREELRRHQVPVYDSPIRSIDSNDGIVHQVVLQDGTIIPCRGIFFKPEL 232

Query: 120 ---RDWSTSVICFLIRSSWVEVSEHCRTT 145
               D   S+ C +  +  V V +  +T+
Sbjct: 233 IPGSDLPQSIGCDITEAGMVVVDDFGKTS 261


>Q65IY3.1 Q65IY3_BACLD Putative uncharacterized protein
          Length = 305

 Score =  202 bits (513), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 97/149 (65%), Positives = 114/149 (76%), Gaps = 4/149 (2%)

Query: 1   MKDQPLDIPGLAEVYGKSAFVCPYCDGWELRDQPLVIITKGAELMHFAPLISGWTDRFTV 60
           MKDQPLDIPGLAEVYGKSAFVCPYCDGWELRD+PLVIITKG E +HFA LISGWT+RFT+
Sbjct: 113 MKDQPLDIPGLAEVYGKSAFVCPYCDGWELRDKPLVIITKGDEAIHFASLISGWTNRFTI 172

Query: 61  CTNGPDQLTDAEREEFKGKQVPLFQSPIRHIDSSDGLVRQVVLEDGTDVSCRGIFFKPE- 119
           CTNGP QLTD + EE    +VP+F++PIR IDS DG+V+QVVLEDGT + C+GIFFK E 
Sbjct: 173 CTNGPHQLTDEQCEELSRHRVPVFEAPIRCIDSDDGIVQQVVLEDGTTIPCKGIFFKTEL 232

Query: 120 ---RDWSTSVICFLIRSSWVEVSEHCRTT 145
               D   ++ C +  S  V V    +T 
Sbjct: 233 VTGSDLPRAIGCDITESGTVVVDNFGKTN 261


>B3K607.1 B3K607_9BACI FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase
          Length = 273

 Score =  187 bits (475), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 99/118 (83%)

Query: 2   KDQPLDIPGLAEVYGKSAFVCPYCDGWELRDQPLVIITKGAELMHFAPLISGWTDRFTVC 61
           KD PLDI GLA+VYGKSAFVCPYCDGWELRDQPLV+I KGA  +HFA +I+GW+DR+T+C
Sbjct: 84  KDSPLDINGLADVYGKSAFVCPYCDGWELRDQPLVVIAKGAGALHFAKVIAGWSDRYTIC 143

Query: 62  TNGPDQLTDAEREEFKGKQVPLFQSPIRHIDSSDGLVRQVVLEDGTDVSCRGIFFKPE 119
           TNGPD+LTD +R+E K   VPLF SPI  I+S++G+VRQVVLEDG  + C GIFF P+
Sbjct: 144 TNGPDELTDEQRQELKDHDVPLFNSPIHRIESNEGMVRQVVLEDGAVIPCTGIFFAPK 201


>C0Z7T7.1 C0Z7T7_BREBN Putative disulfide oxidoreductase
          Length = 304

 Score =  164 bits (416), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 75/149 (50%), Positives = 101/149 (67%), Gaps = 4/149 (2%)

Query: 1   MKDQPLDIPGLAEVYGKSAFVCPYCDGWELRDQPLVIITKGAELMHFAPLISGWTDRFTV 60
           MKD PL + GLAEVYGKSAFVCPYCDGWELRDQPLV+I  G + +H A ++SGWT+ +T+
Sbjct: 112 MKDLPLPVNGLAEVYGKSAFVCPYCDGWELRDQPLVLIANGEKALHLAKVLSGWTNHYTL 171

Query: 61  CTNGPDQLTDAEREEFKGKQVPLFQSPIRHIDSSDGLVRQVVLEDGTDVSCRGIFFKPE- 119
           CTNGPD+ T+ +R E    ++P+F SPI  I S DG+V+ V L DG  +SC GIFF P+ 
Sbjct: 172 CTNGPDEFTEEQRMELLQHRIPVFDSPIERIVSIDGMVQHVELTDGNSISCTGIFFAPKL 231

Query: 120 ---RDWSTSVICFLIRSSWVEVSEHCRTT 145
               D   ++ C +  +  + V    +T+
Sbjct: 232 VAASDLPQALGCQVTEAGTIIVDNFGKTS 260


>A0R092.1 A0R092_MYCS2 Methyltransferase
          Length = 518

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/109 (43%), Positives = 67/109 (61%)

Query: 5   PLDIPGLAEVYGKSAFVCPYCDGWELRDQPLVIITKGAELMHFAPLISGWTDRFTVCTNG 64
           P +IPGL E++G+S F CP+C GWE+RD PL +I +G   +H A L+  W+D   V TNG
Sbjct: 114 PPNIPGLGELWGRSVFHCPFCHGWEVRDAPLAVIARGERAVHSALLLRAWSDDIVVLTNG 173

Query: 65  PDQLTDAEREEFKGKQVPLFQSPIRHIDSSDGLVRQVVLEDGTDVSCRG 113
           PD L DA+ E+     +P+  + I  + + DG +  V   DGT +S RG
Sbjct: 174 PDGLDDAQTEKLGAAGIPVNDASIARLVAHDGELVAVEFTDGTRLSRRG 222


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.140    0.454 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 961,905,429
Number of extensions: 37735609
Number of successful extensions: 63622
Number of sequences better than 1.0e-05: 217
Number of HSP's gapped: 63572
Number of HSP's successfully gapped: 217
Length of query: 168
Length of database: 3,060,696,203
Length adjustment: 125
Effective length of query: 43
Effective length of database: 1,883,069,328
Effective search space: 80971981104
Effective search space used: 80971981104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)