BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0547.0036.p (168 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KGI4.1 B3KGI4_9BACI CoA-binding domain protein 213 6e-54 B1DHR7.1 B1DHR7_9BACL CoA-binding domain protein 182 1e-44 C2PIB0.1 C2PIB0_BACCE CoA binding domain containing protein 168 2e-40 C2ZSH3.1 C2ZSH3_BACCE CoA binding domain containing protein 167 3e-40 C2ZAY8.1 C2ZAY8_BACCE CoA binding domain containing protein 167 3e-40 >B3KGI4.1 B3KGI4_9BACI CoA-binding domain protein Length = 140 Score = 213 bits (541), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 103/141 (73%), Positives = 120/141 (85%), Gaps = 1/141 (0%) Query: 25 MSFENPSREQIGEILAAAGNIAVVGLSDKTDRTSYMVAGAMQSRGYRIIPVNPSVDGEIL 84 M+FENP+RE+I +IL AGNIAVVGLSD+ DRTS+MV+ AMQ RGYRIIPVNP EIL Sbjct: 1 MAFENPTREEIADILRNAGNIAVVGLSDRPDRTSHMVSAAMQQRGYRIIPVNPGA-AEIL 59 Query: 85 GEKCYHTLAEIPEPVDIVNVFRRSEYCADVAREAADIGARVLWLQQGIVSQEAADIAAEH 144 GEK Y +L +IPEP+ IVNVFRRSEYCADVAREAA+IGA+VLWLQQGI+S+EAA IA Sbjct: 60 GEKSYPSLKDIPEPIHIVNVFRRSEYCADVAREAAEIGAKVLWLQQGIISEEAAAIAESS 119 Query: 145 GMTAIMDRCIKVEEAITMKGR 165 GM AIMDRCIKVE++I + GR Sbjct: 120 GMIAIMDRCIKVEDSIALGGR 140 >B1DHR7.1 B1DHR7_9BACL CoA-binding domain protein Length = 144 Score = 182 bits (461), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 87/138 (63%), Positives = 108/138 (78%), Gaps = 1/138 (0%) Query: 25 MSFENPSREQIGEILAAAGNIAVVGLSDKTDRTSYMVAGAMQSRGYRIIPVNPSVDGEIL 84 M+FENP+R++I EIL A+ IAVVGLSDK DR SYMV+ A+Q +GYRIIPVNP+ + IL Sbjct: 1 MAFENPTRDEIKEILQASNTIAVVGLSDKPDRVSYMVSQALQKKGYRIIPVNPAAET-IL 59 Query: 85 GEKCYHTLAEIPEPVDIVNVFRRSEYCADVAREAADIGARVLWLQQGIVSQEAADIAAEH 144 GEK Y +L +IPEPVDIVNVFRR E+ +A EA IGA+ LWLQ GIV+ E A IA+E Sbjct: 60 GEKSYASLKDIPEPVDIVNVFRRPEHTPPIAEEAVAIGAKTLWLQLGIVNDETARIASEG 119 Query: 145 GMTAIMDRCIKVEEAITM 162 G+ IMDRCIKVE++I + Sbjct: 120 GLQVIMDRCIKVEDSILL 137 >C2PIB0.1 C2PIB0_BACCE CoA binding domain containing protein Length = 137 Score = 168 bits (425), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 82/137 (59%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 25 MSFENPSREQIGEILAAAGNIAVVGLSDKTDRTSYMVAGAMQSRGYRIIPVNPSVDGEIL 84 M+ ENP+R +IGE+L + IAVVGLSDK +RTSYMV+ AMQ GYRIIPVNP+VD E+L Sbjct: 1 MTIENPTRTEIGEVLKKSKTIAVVGLSDKPERTSYMVSKAMQDAGYRIIPVNPTVD-EVL 59 Query: 85 GEKCYHTLAEIPEPVDIVNVFRRSEYCADVAREAADIGARVLWLQQGIVSQEAADIAAEH 144 GEK +L EI E VDIVNVFRRSE+ DVA+E +I A V W Q G+ ++ + E Sbjct: 60 GEKAVASLKEIKEHVDIVNVFRRSEFLMDVAKEFVEIDADVFWAQLGVKDEDTYKLLKEK 119 Query: 145 GMTAIMDRCIKVEEAIT 161 G T IMDRCIKVE A+T Sbjct: 120 GYTVIMDRCIKVEHAMT 136 >C2ZSH3.1 C2ZSH3_BACCE CoA binding domain containing protein Length = 137 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/137 (59%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 25 MSFENPSREQIGEILAAAGNIAVVGLSDKTDRTSYMVAGAMQSRGYRIIPVNPSVDGEIL 84 M+ ENP+R +IGE+L + IAVVGLSDK +RTSYMV+ AMQ GYRIIPVNP+VD E+L Sbjct: 1 MTIENPTRTEIGEVLKKSKTIAVVGLSDKAERTSYMVSKAMQDAGYRIIPVNPTVD-EVL 59 Query: 85 GEKCYHTLAEIPEPVDIVNVFRRSEYCADVAREAADIGARVLWLQQGIVSQEAADIAAEH 144 GEK +L +I E VDIVNVFRRSE+ DVA+E +I A V W Q G+ ++ + E Sbjct: 60 GEKAVSSLKDIKEHVDIVNVFRRSEFLMDVAKEFVEIDADVFWAQLGVQDEDTYKLLQEK 119 Query: 145 GMTAIMDRCIKVEEAIT 161 G T IMDRCIKVE A+T Sbjct: 120 GYTVIMDRCIKVEHAMT 136 >C2ZAY8.1 C2ZAY8_BACCE CoA binding domain containing protein Length = 137 Score = 167 bits (423), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 81/137 (59%), Positives = 100/137 (72%), Gaps = 1/137 (0%) Query: 25 MSFENPSREQIGEILAAAGNIAVVGLSDKTDRTSYMVAGAMQSRGYRIIPVNPSVDGEIL 84 M+ ENP+R +IGE+L + IAVVGLSDK +RTSYMV+ AMQ GYRIIPVNP+VD E+L Sbjct: 1 MTIENPTRTEIGEVLKKSKTIAVVGLSDKAERTSYMVSKAMQDAGYRIIPVNPTVD-EVL 59 Query: 85 GEKCYHTLAEIPEPVDIVNVFRRSEYCADVAREAADIGARVLWLQQGIVSQEAADIAAEH 144 GEK +L +I E VDIVNVFRRSE+ DVA+E +I A V W Q G+ ++ + E Sbjct: 60 GEKAVSSLKDIKEHVDIVNVFRRSEFLMDVAKEFVEIDADVFWAQLGVQDEDTYKLLQEK 119 Query: 145 GMTAIMDRCIKVEEAIT 161 G T IMDRCIKVE A+T Sbjct: 120 GYTVIMDRCIKVEHAMT 136 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.134 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 982,205,819 Number of extensions: 36998034 Number of successful extensions: 115046 Number of sequences better than 1.0e-05: 687 Number of HSP's gapped: 114341 Number of HSP's successfully gapped: 687 Length of query: 168 Length of database: 3,060,696,203 Length adjustment: 125 Effective length of query: 43 Effective length of database: 1,883,069,328 Effective search space: 80971981104 Effective search space used: 80971981104 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)