BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0547.0026.p
         (153 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1DHR2.1 B1DHR2_9BACL Putative uncharacterized protein                 96   9e-19
B3KIZ3.1 B3KIZ3_9BACI Putative uncharacterized protein                 89   1e-16
C0ZHM2.1 C0ZHM2_BREBN Putative uncharacterized protein                 67   4e-10

>B1DHR2.1 B1DHR2_9BACL Putative uncharacterized protein
          Length = 137

 Score = 96.3 bits (238), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 54/141 (38%), Positives = 80/141 (56%), Gaps = 15/141 (10%)

Query: 10  LKTSCSCGGIMTIHMHTLIYSAKIKIKHVPVYTCGECGRYEPLSCIKGDLGKLIHELGEM 69
           ++  C CG IM + + T+IYS K++I +VP+Y+C  C R E L  +K DL  LI +LG+ 
Sbjct: 1   MQKRCHCGDIMKMKLRTVIYSGKVEIDNVPIYSCSVCSRSEVLPDVKPDLTGLIAKLGQE 60

Query: 70  PSKRHISFADRNEWASVLKETFAKGLFAGGMSELEEQ-----IRSAIQGRIDLLLDVYRL 124
           P K+   F + NEWA +L E           SE + Q     I    Q RI+ LLD++ +
Sbjct: 61  PPKQTFLFNECNEWADLLVEA----------SEDKNQPDPYHIERLTQERINNLLDLHLI 110

Query: 125 AVDLNDHKWMDETGIRLSQLT 145
           A  L+D +W+ +   RLSQL+
Sbjct: 111 AQSLHDEEWIADINKRLSQLS 131


>B3KIZ3.1 B3KIZ3_9BACI Putative uncharacterized protein
          Length = 166

 Score = 89.0 bits (219), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 49/137 (35%), Positives = 72/137 (52%), Gaps = 1/137 (0%)

Query: 9   LLKTSCSCGGIMTIHMHTLIYSAKIKIKHVPVYTCGECGRYEPLSCIKGDLGKLIHELGE 68
           +L  +C+CG  M + +  LI+  K +I  VPVY C  C +YE L  IK DL + +  +  
Sbjct: 16  ILFKTCNCGQSMKLELRKLIHERKTRICDVPVYACQACKKYELLPLIKPDLLRYLASINN 75

Query: 69  MPSKRHISFADRNEWASVLKETFAKGLFAGGMSELEEQIRSAIQGRIDLLLDVYRLAVDL 128
              +  +SFAD NE A VL+E F +        E + +       RI++LLD++R A  L
Sbjct: 76  ETERIRVSFADVNEAAYVLREVF-RTYDDDSSPEWQARCMEVFDERINMLLDLFRYAQSL 134

Query: 129 NDHKWMDETGIRLSQLT 145
            D  WM +   RL QL+
Sbjct: 135 ADGDWMRQIEGRLEQLS 151


>C0ZHM2.1 C0ZHM2_BREBN Putative uncharacterized protein
          Length = 121

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 69/129 (53%), Gaps = 10/129 (7%)

Query: 20  MTIHMHTLIYSAKIKIKHVPVYTC--GECGRYEPLSCIKGDLGKLIHELGEMPSKRHISF 77
           M I +  ++Y  ++KI +VPV  C   +C   + +  IK DL  L+ ELG+ P ++ I F
Sbjct: 1   MEIELRNVVYRKRVKIMNVPVQVCVDEDCDHSQVVDVIKDDLKSLMEELGQHPQRQAIEF 60

Query: 78  ADRNEWASVLKETFAKGLFAGGMSELEEQIRSAIQGRIDLLLDVYRLAVDLNDHKWMDET 137
            + +E +++L       L A    ++    R  +  +++ LLD++ LA  L D KWM E 
Sbjct: 61  EEVSELSNLL------VLIAN--EKVNSTARELLGEKVNELLDLFLLAQSLGDEKWMLEL 112

Query: 138 GIRLSQLTV 146
             RL+++ V
Sbjct: 113 RERLTKIMV 121


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.321    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 913,118,534
Number of extensions: 34816223
Number of successful extensions: 84926
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 84923
Number of HSP's successfully gapped: 3
Length of query: 153
Length of database: 3,060,696,203
Length adjustment: 115
Effective length of query: 38
Effective length of database: 1,977,279,478
Effective search space: 75136620164
Effective search space used: 75136620164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)